fubp3 (fubp3,LOC107689604,LOC107687236,LOC106566971)


Basic Information

Item Value
gene id fubp3
gene name fubp3,LOC107689604,LOC107687236,LOC106566971
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30590843 ~ 30613141 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU60232
GCCTTGCACCCTGACCGGGACCCCAGAGAGCATCGAGCAGGCCAAGCGCTTGCTGGGGCAGATCGTGGACGGTGCCGGAGCGGACCGGGCTTCCATACTCAGATGGACGGGAACAGCGCCGTCCAGGAGATCCTGATCCCAGCCAGCAAAGTGGGCCTGGTCATCGGGAAGGGAGGAGACACCATTAAACAGCTTCAGGAGAGGACAGGAGTAAAGATGATCATGATTCAGGGCGACCCGATGCCCACTGGATCAGACAAACCCTTGAGAATCACTGAGACCCTTATAAAGTTCAgCAAGCACGGGAGCTGGTGGTGGAGATCATCAGGGAAAAGGATCAGGGAGACTTCCGCAGCGGCCGCAGTGACTTCGGCTCCAGGCTGGGCAGCAGCATCGACGTGGCGGTGCCCAGGTTTGCCGTAGGAATCGTCATCGGCAGAAACGGGGAGATGATCAAGAAGATTCAGAACGATGCAGGAGTCAGGATCCAGTTTAAGCCAGGTCAGTGTTGATGGACCTCACGTTTGTGCAGCGTTAACATGGCGAGAGGTAACTACACACCGCTACATCTCGTGACAAAAAGAGCTTTAATACCGCTCAGTGTATTGATGCTAATGTATTGCAGTTTACCAGTCAAATGTCAAAAGTAAAACGCAC
>TU60233
CGCTGAGGTCTCGCGGTGCTCCCTCGCGCGTTTCCTGTTCCGGGGTCGGTAgtgtgcgctgtgtgtgtgtttatgcgcttgtgtgtgtgagtgtgtgtgatgatgatgatggcggAGCTGGTGCAGGGACAGGCCTCGGTGGCTCAGACCGGGATGAAGGACGGATTCACGGACCCCTTTCACCGCGCGCGGCAGatcGCTAAGATGGGTGGAGAGCAGATGCAGCATCTGAACAACTCGTCTCCGGTGGTCGATGCCTCTCTGTACGGCTACGGAGGGCAGAAGCGCTCGCTGGATGAAGGAGTGGCTAACCAGCTCGGGCGCAATGGTACATGGTACAAGG
>XM_043240921.1
TCCTGTTCCGGGGTCGGTAgtgtgcgctgtgtgtgtgtttatgcgcttgtgtgtgtgagtgtgtgtgatgatgatgatggcggAGCTGGTGCAGGGACAGGCCTCGGTGGCTCAGACCGGGATGAAGGACGGATTCACGGACCCCTTTCACCGCGCGCGGCAGatcGCTAAGATGGGTGGAGAGCAGATGCAGCATCTGAACAACTCGTCTCCGGTGGTCGATGCCTCTCTGTACGGCTACGGAGGGCAGAAGCGCTCGCTGGATGAAGGAGTGGCTAACCAGCTCGGCGCAATGGTACATGGTACAAGggCTATAATAACAGAAGACTTCAAAGTGCCTGATAAGATGGTTGGATTCATCATTGGACGAGGCGGTGAACAGATCACAAGAATTCAGCTGGAATCTAACTGTAAGATCCAGATCGCTGCGGTGCACAGCGGAGGTATGATGGACAGGCCTTGCACCCTGACCGGGACCCCAGAGAGCATCGAGCAGGCCAAGCGCTTGCTGGGGCAGATCGTGGGGTGCCGGAGCGGACCGGGCTTCCATACTCAGATGGACGGGAACAGCGCCGTCCAGGAGATCCTGATCCCAGCCAGCAAAGTGGGCCTGGTCATCGGGAAGGGAGGAGACACCATTAAACAGCTTCAGGAGAGGACAGGAGTAAAGATGATCATGATTCAGGGCGACCCGATGCCCACTGGATCAGACAAACCCTTGAGAATCAGAGACCCTTATAAAGTTCAgCAAGCACGGGAGCTGGTGGTGGAGATCATCAGGGAAAAGGATCAGGGAGACTTCCGCAGCGGCCGCAGTGACTTCGGCTCCAGGCTGGGCAGCAGCATCGACGTGGCGGTGCCCAGGTTTGCCGTAGGAATCGTCATCGGCAGAAACGGGGAGATGATCAAGAAGATTCAGAACGATGCAGGAGTCAGGATCCAGTTTAAGCCAGATGACGGATCAGTCGGACGGATCGCTCAGGTCATGGGTCAGCCGGACCGCTGTCAGCACGCCGTTCACCTCATCAATGATCTGGTCCACACGGCACAGGAGCGTGATGGCTTCGGAGGCCCGGTTGGACCCAGAGGTCGCGGCAGAGGTCGCGGTGATTGGAACATGGGAACTCCTGGAGGCCTGCAGGAAGTGACCTACACAATACCAGCTGATAAATGTGGCCTTGTGATCGGGAAAGGTGGAGAGACCATAAAGAACATCAACCAGCAGTCAGGAGCTCACGTGGAGCTGCAGAGAAATCCTCCTCCAAACACCGACCCCAACGTCCGGATCTTCTCCATCCGTGGATCTCCTCAGCAGATGGAGATGGCCAGACAGCTGATCGACGAGAAGATCGGGGCGTCTGGAATGGGAGGAAGCAGCAGTTTTGGACTCAGTCCTTTTACTCAAGGACCAGCGACTCCTCATCAGAAtggcCCGCAGACGCTCATGACTGGAGGTTGGGGAACCACGCACCAGACATGGCAGCCTCAGAGCCAGCAGGACCCCAGTCACAATGGATCTCAGACCGGCCAGATGGACTATTCCAAAGCGTGGGAGCAGTATTATAAAAAGCTAGGTCAGCAGAACCAAGGCCAGAGCAGCGGCTCCGACTACAGCAAAGCATGGGAGGAGTATTACAAGAAACAGACTCAGGCCGCCGGTCCTGGATCTCAGCAGAGCTCTCCTCCTGATTATAGCGCTGCCTGGGTGGAGTATTACAGACAGCAGGGGGCGTATTACGGCCAGGGACAGACGCAGGCTCCCGGCCTCCCGGATCATTAAAGCGGGCGACTGCAGACCCTTTAGTTGAAGATTTTTGAATCACTGCGAGGAGGAAACAGACCTTTTGTAACAGAGGTTTCTAGATTTGCAACGCCTTGaagacttttactttttttcttagtgAGAAACACTAGCTGTAGAATGActtatatgatttaaaaagagAACTATTTCTAAATCAGGACATCCAATTGTTACTAAATACTTGTGTACACCATTACTCGAATGGGGC

Function

symbol description
fubp3 Predicted to enable RNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human FUBP3 (far upstream element binding protein 3).

NR:

description
PREDICTED: far upstream element-binding protein 3-like

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU60232 False 657 TUCP 0.54 5 30600901 30603493
TU60233 False 343 TUCP 0.60 3 30604844 30613141
XM_043240921.1 True 2012 mRNA 0.55 22 30590843 30613109

Neighbor

gene id symbol gene type direction distance location
LOC122344972 NA coding downstream 10515 30576288 ~ 30580328 (-)
LOC122344973 NA coding downstream 48403 30540497 ~ 30542440 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding downstream 52928 30535834 ~ 30537915 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding downstream 67424 30520606 ~ 30523419 (-)
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding downstream 79564 30491031 ~ 30511279 (-)
ass1 ass1,LOC107740768,LOC107687233,LOC107689608 coding upstream 9063 30622204 ~ 30644747 (-)
surf4 surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134 coding upstream 33145 30646286 ~ 30652310 (-)
surf2 surf2,LOC107740795,LOC107581206,LOC107743090 coding upstream 40022 30653163 ~ 30655957 (-)
ciz1a ciz1a,LOC107687257,LOC107571633,LOC107740230,LOC107689607 coding upstream 46978 30660119 ~ 30672096 (-)
golga2 golga2,LOC107658391 coding upstream 120963 30734104 ~ 30754940 (-)
G40701 NA non-coding downstream 203 30590197 ~ 30590640 (-)
G40698 NA non-coding downstream 20743 30567251 ~ 30570100 (-)
G40672 NA non-coding downstream 24687 30565684 ~ 30566156 (-)
G40670 ythdc2 non-coding downstream 26466 30564117 ~ 30564377 (-)
G40684 NA non-coding downstream 72388 30516065 ~ 30518455 (-)
LOC122345983 NA non-coding upstream 95632 30708773 ~ 30710678 (-)
G40708 dnm1,LOC107568151,LOC107658356 non-coding upstream 107051 30720192 ~ 30725226 (-)
G40739 NA non-coding upstream 157573 30770714 ~ 30772024 (-)
G40751 hspa5,LOC107687227,LOC107567952 non-coding upstream 207984 30821125 ~ 30846878 (-)
G40762 NA non-coding upstream 253102 30866243 ~ 30919600 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 497267 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 662168 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 935782 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 1100639 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 1264728 29323982 ~ 29326115 (-)
G40711 NA other upstream 17887 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 176492 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 204591 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 718208 31331349 ~ 31350449 (-)
apooa apoo other upstream 1089312 31702453 ~ 31711737 (-)

Expression


Co-expression Network