LOC122344987 (LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309)


Basic Information

Item Value
gene id LOC122344987
gene name LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31331349 ~ 31350449 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU60460
TTTCTAGCGTTCCTGCCGTTCGGATCAACCACACTGAGTCTTCGGGACAGCTCGTGCGGATTCTGCGCTTTTCAACACGGATCTGTGGAAATGTAATCAGAGTCGAGCAGTTTTTATGTCGGAGCTCACGGGAAACGTTTCCAGGCGTTCACAGTGGGATTTTGATGCCGTGCTCGGTCCGAGTGGAATAACTGAGACATTGTTGCATTGATGGATAAGGCGATTCTGCTACAACCTGTTACATTCTGGAATGTTTGGAATCCTTTGAAGTGGACGCGGCGCGCCGCACAATAGTGGAGTCATTATGACGTCACGTTATCAATCACAACGCGCGGGAAGCTGCGATATTATTGAATTGACCTTTGGGAGATCATAATAAACTCTTTTTCTGTCGTTCAAATCAATGCTCGCGCCAGGGGTCTGTCCGCTGTCAATCACCCCGTCCCTCTGTCAGTCATGTTCTGTCAGTGATACGGGCCAGTCCCCAGCTGAAGGGCCACAGAATTGCTCGTGATATTCGTTTACTTCCGATCTCCATCCTGCAGAGTGTTTAAAACTATCCACTTCAAAAGCCTCTGGGATTTCAGACAGTTTCGCTGACTTGGAAGGATTCTCCTGTCTTTTTATCTGAGCTCTGATTGGACGGATAGCGCATAATGTATGGCCGGGGCCCGCCGCTGCAGCCAGGACAATGAGGGTTCCTGTGCGGCAATTGGCCGGGCTCTGGCCGTGGCTGCTCATGGCTGCCTCGCAGGTGGCTTTGGGCCACACGGGCCTGGAACTAGCCGCTGCCGTGGAGTCGGAACGCTCTCCCAGAGCCGCGATCAAGGTGTCGCTGCTGAAGCAGGAGCCCACCAGCAGGCCCATCACCCTGGAAGGGGTGTTCGCCGGAGGCAGCACAGGCTACGCTGAAGGAAAACTGATGCAGACCCGTTAGGTGCAGCACGTCAGGAGAGCTTCTGAAGAATCTCCGTGCAGCTTTTCCATGCCATGATCCGCCTGATGGCTTTGGGTGACGCGAGGAAAG
>XM_043238677.1
cacacacgcacacatacacacacacacacgcatacaaacGAAAAACAGTATCACGGCTTTAAACGGTTTCtcggtttttattttaaatctgtatttaacctcAGAATGATCTCAAAGTAAAAAAAGGTGCTGAAGTCATTTGTGAGCATTcagttgaattattattatcttcatTTAAGTGATTTAAGTCGGACTAATCATAattatgtactatatataattCCAAACGATTAAGTTCAAAACACAGGAAGTGTAGAAAAGTTATCAAAAGGAATCAGTTACACTGCTTTAGGAAAGCAACTGAAATAGTTAAActcctttttacattttaaatagggtAAAATAAGCACCTTAATTGCTGATTTATAATATTTGGGCAAAAAAAGGATGCAATTCTGATGCTCAAAATGCAAATCAGTGAGATTTTTATAACAATACgtgtataaaatgatataaataacaGCTGTCACTCTATATTTCCAGTAATATGTCTTATATGTCaaacatataatgcaatgcaaccCACCAAAGAATGATGTCTGAATAGTAAAGTAAAGCTAAGCTATTATAATGTTATTCagatatattatgaatatttagcagctctgttttaaatgatgacTGATTCTCAGGTTCAGCAGACCCACATGTTCAGATGTGGTCCGAGCGAAGCCCGGTTCCTCCGCTCTCCTGGAGCTTTCCTCACAGTGACGTGCCTCCCTTCTACTCTAACAAAGTCATCCGCCTCAATCCCTACAACACTCCTCACGGGATCCAGCCCGCTCCCGTTGCTCTGTTTCCACACGAGCCCAAATATATACCTCATCAGCTGACCTGTCCTCCTGGATTTTATCTGCCAGTAGTTTGTCAGTGCTGCACCGCTGCTTTTATTGAAGGTGGAGAAGCAGCTCGGCCATATTCACATTATGCTTATTACCCGCAGAACTATTCACTAAGCCACGATCACAACAGCATCCAAAGCACGACCTGGCCCGCGGAGTCTCAGCGGGGCGACGTGAACCTCGACAGGGTGTTTCAGATGGTGGATGAGCTCCAGGGTCTGCCCAACATCCATGTAGCGCGAGTGGGCTCCCCTGTGAACGTCCAGCGCTCGTCCAGCCCATCAGCTGACCTCGACCCTCCTCAGCGCTCCAGGACAGACACCTCCACGGCCTGCAGAGAGTCTGAGAAGCAAGGAGCCTGCCAACTCCAAGAAGGTCATTCGGCATCCCCGGAGGCCTCGGTAAAGGCTGCTACAGAGGAAGTGACTCAGGGAAGCAGCAGAGACAAACAGCACAGACTCTAGCGTTCCTGCCGTTCGGATCAACCACACTGAGTCTTCGGGACAGCTCGTGCGGATTCTG
>XM_043238678.1
cacacacgcacacatacacacacacacacgcatacaaacGAAAAACAGTATCACGGCTTTAAACGGTTTCtcggtttttattttaaatctgtatttaacctcAGAATGATCTCAAAGTAAAAAAAGGTGCTGAAGTCATTTGTGAGCATTcagttgaattattattatcttcatTTAAGTGATTTAAGTCGGACTAATCATAattatgtactatatataattCCAAACGATTAAGTTCAAAACACAGGAAGTGTAGAAAAGTTATCAAAAGGAATCAGTTACACTGCTTTAGGAAAGCAACTGAAATAGTTAAActcctttttacattttaaatagggtAAAATAAGCACCTTAATTGCTGATTTATAATATTTGGGCAAAAAAAGGATGCAATTCTGATGCTCAAAATGCAAATCAGTGAGATTTTTATAACAATACgtgtataaaatgatataaataacaGCTGTCACTCTATATTTCCAGTAATATGTCTTATATGTCaaacatataatgcaatgcaaccCACCAAAGAATGATGTCTGAATAGTAAAGTAAAGCTAAGCTATTATAATGTTATTCagatatattatgaatatttagcagctctgttttaaatgatgacTGATTCTCAGGTTCAGCAGACCCACATGTTCAGATGTGGTCCGAGCGAAGCCCGGTTCCTCCGCTCTCCTGGAGCTTTCCTCACAGTGACGTGCCTCCCTTCTACTCTAACAAAGTCATCCGCCTCAATCCCTACAACACTCCTCACGGGATCCAGCCCGCTCCCGTTGCTCTGTTTCCACACGAGCCCAAATATATACCTCATCAGCTGACCTGTCCTCCTGGATTTTATCTGCCAGTTTGTCAGTGCTGCACCGCTGCTTTTATTGAAGGTGGAGAAGCAGCTCGGCCATATTCACATTATGCTTATTACCCGCAGAACTATTCACTAAGCCACGATCACAACAGCATCCAAAGCACGACCTGGCCCGCGGAGTCTCAGCGGGGCGACGTGAACCTCGACAGGGTGTTTCAGATGGTGGATGAGCTCCAGGGTCTGCCCAACATCCATGTAGCGCGAGTGGGCTCCCCTGTGAACGTCCAGCGCTCGTCCAGCCCATCAGCTGACCTCGACCCTCCTCAGCGCTCCAGGACAGACACCTCCACGGCCTGCAGAGAGTCTGAGAAGCAAGGAGCCTGCCAACTCCAAGAAGGTCATTCGGCATCCCCGGAGGCCTCGGTAAAGGCTGCTACAGAGGAAGTGACTCAGGGAAGCAGCAGAGACAAACAGCACAGACTCTAGCGTTCCTGCCGTTCGGATCAACCACACTGAGTCTTCGGGACAGCTCGTGCGGATTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60460 False 1027 lncRNA 0.54 3 31331349 31347023
XM_043238677.1 True 1364 mRNA 0.44 5 31346959 31350449
XM_043238678.1 False 1361 mRNA 0.44 5 31346959 31350449

Neighbor

gene id symbol gene type direction distance location
ca4a LOC107663683,LOC107654307,LOC107734368,LOC107719346 coding downstream 134382 31191163 ~ 31196967 (-)
gusb gusb,LOC107719352,LOC107701859,LOC107654306,LOC107734369,LOC104964597,LOC107591494 coding downstream 176236 31142577 ~ 31155113 (-)
rplp0 rplp0,LOC107654305 coding downstream 218616 31108723 ~ 31112733 (-)
LOC122344691 NA coding downstream 250084 31074043 ~ 31081265 (-)
rcl1 rcl1,LOC107701854,LOC107655287 coding downstream 266994 31053924 ~ 31064355 (-)
LOC122345520 LOC107663881,LOC107725093,LOC107654310,LOC107734346,LOC107563427 coding upstream 19361 31369810 ~ 31454508 (-)
hspb1 LOC107591466,LOC107667824,LOC107725127,LOC107562193,LOC107654311,LOC107734358 coding upstream 148040 31498489 ~ 31503030 (-)
srrm3 srrm3,LOC107591468,LOC107734356,LOC107562180,LOC107725131,LOC107654313 coding upstream 156030 31506479 ~ 31567684 (-)
LOC122344718 LOC107725156,LOC107654314,LOC107591470,LOC107734345,LOC100535945,LOC107562196 coding upstream 218331 31568780 ~ 31590397 (-)
LOC122344719 c1qbp,LOC107725147,LOC107664384,LOC107654317,LOC107734359 coding upstream 244028 31594477 ~ 31598310 (-)
G40842 NA non-coding downstream 50918 31280177 ~ 31280431 (-)
G40841 NA non-coding downstream 58348 31272686 ~ 31273001 (-)
LOC122344940 NA non-coding downstream 109092 31220817 ~ 31222257 (-)
G40798 NA non-coding downstream 236426 31088192 ~ 31094923 (-)
G40794 NA non-coding downstream 291892 31038405 ~ 31039457 (-)
G40995 NA non-coding upstream 72636 31423085 ~ 31506097 (-)
G40996 NA non-coding upstream 85200 31435649 ~ 31495269 (-)
LOC122345708 NA non-coding upstream 106051 31456500 ~ 31498094 (-)
G41034 NA non-coding upstream 296409 31646858 ~ 31648612 (-)
G41023 NA non-coding upstream 305134 31655583 ~ 31701818 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 504991 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 538630 30789633 ~ 30792719 (-)
G40711 NA other downstream 597989 30631028 ~ 30733360 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 718208 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 1237773 30087966 ~ 30093576 (-)
apooa apoo other upstream 352004 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 370821 31721270 ~ 31722906 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 763447 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 863582 32214031 ~ 32293782 (-)
LOC122346085 LOC107748069,LOC107679343,LOC107594586 other upstream 933088 32283537 ~ 32314631 (-)

Expression


Co-expression Network