G40996


Basic Information

Item Value
gene id G40996
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31435649 ~ 31495269 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU60685
AACGACTCGGCGCCGAAATGGTGGTTAGAAGAGCacagtcatgttttatttttttaattatcattattattatcattacgtTTCTTTTGTGCAACCGCTACATGACTCACATTTAAGATACCAGTAGACgagggaaaagaaagaaaaccgaAATCATAAGAATAGGTCATGTTCCATGAGCGAGTCCCATACAGAAACAGATTCggaggaaaacaaacactgatatTACAGCAAATCTTAAATATCTCACAGTAGAATCTGACAGAAGAAAGCACAGAAAAGGAAAAGTCATTTCGAGAACAACATCTTCACAATGTAATCATAATTTACCGTGACCGAACACCACACCTGGtgtcttctcttttttttttttttttttgtcttttcgcttcctttttttgtgtttattacaaACCAAATACAAGAATCGCATGTCACTAGAGCAACATCCATTACAGATTATTTCATGGTAAACACGCACTGTTTTGGTATAGCGTACTTCAGCGAGGAAAAAGATGTAGGAAAAAATAAATCGTAAAGAGATCGAAACGATCCGATAGaaagtaataaatacaaaaaaaaaaaaattcttgtcATTTCTTGCTCATATGAATACGTAACATCTACAgattttaaagttaataaagtCGAGCTATGGTATATAAATACATCACCAGCATGCACAATATTGTATTATCAAGAATATTGGAGCTGTATCGTCCTACACTGAGAAACAGTATAATAGGCAAGTGCATTTCATGagaattcaaagaaaaaaagaacaaaagctaTTTTATGCCAGTGCACTGTAGAAAtaaattaagtgaaaaaaactaaaaatagtcTATGGTACCAGTAATATTAATTGAGTGTATCAAACCACGTGATTAGGcattactttagtttttttccccacttatTTTAACGTTTTCGCCCGTACCATAATTCGATTATTTAATCTATAATACCTAGAACTGTTCTTCAGTGCATTAAAATCAAGTCTCGCTTTTCTCGTACGCCGCGGGGTCAGGCTCGACGATTTCTGAAACGCCATCCacgataataatgataataataacgatCGGAAAACGGTTTAAGCTTTGGACTGAAAAGGCCATACACGTACCAGGGAAGTCATAACTGTGCGTTATTTTTGCACGCCTAATCAACGTTACTGTAATACAGCAGTTTGGTGTGGTTCCGAGGTGAGATGCATACTAACGATGTGGATCATAAATGGCACAGATAACCAGTTCGACGTAAACGACTTTCAAACATTAGTGGGTGCGATCCAGAATCCCTACGAACATATATATCAGACAGAAACACGACCGTTTACGCCCAGTGCAGCCTACCTTTGCGAGGCGATAACATTcaagatttttttgtcatttaagcCCACCTCTGACGCTTTAGAGCACTCTTTACTCACAATGTAAATTAACATAAGCAGCTCCGCTTCGAACAGTCCCTATGCCAGGGGGTTTAGCGTAACCCTTCGGCCGTTTAGCAACGGCCGACAACCGACAAGCTTTTTCCTCAAAAGTGTTGCGTAAACGTCCCCGAAAGAGaggtttaatttattctttttaagcTACttcttaattgttttgtttgttttttttaatcgtttGCCATTCTTCGTAACTAGCGTATTTCTCTCGATTGCAATTTAGtggaaaataaagtaaactgcGCTGCCTTGCTATCAGCAAACGTGGCCGACACAGTTCCATCATGCCCCCCGTTGTGAATTTTTCATGTAacttatactttttttttttttttttttttttttttttttttt

Function

NR:

description
PREDICTED: large subunit GTPase 1 homolog

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60685 True 1807 lncRNA 0.37 2 31435649 31495269

Neighbor

gene id symbol gene type direction distance location
ca4a LOC107663683,LOC107654307,LOC107734368,LOC107719346 coding downstream 238682 31191163 ~ 31196967 (-)
gusb gusb,LOC107719352,LOC107701859,LOC107654306,LOC107734369,LOC104964597,LOC107591494 coding downstream 280536 31142577 ~ 31155113 (-)
rplp0 rplp0,LOC107654305 coding downstream 322916 31108723 ~ 31112733 (-)
LOC122344691 NA coding downstream 354384 31074043 ~ 31081265 (-)
rcl1 rcl1,LOC107701854,LOC107655287 coding downstream 371294 31053924 ~ 31064355 (-)
hspb1 LOC107591466,LOC107667824,LOC107725127,LOC107562193,LOC107654311,LOC107734358 coding upstream 3220 31498489 ~ 31503030 (-)
srrm3 srrm3,LOC107591468,LOC107734356,LOC107562180,LOC107725131,LOC107654313 coding upstream 11210 31506479 ~ 31567684 (-)
LOC122344718 LOC107725156,LOC107654314,LOC107591470,LOC107734345,LOC100535945,LOC107562196 coding upstream 73511 31568780 ~ 31590397 (-)
LOC122344719 c1qbp,LOC107725147,LOC107664384,LOC107654317,LOC107734359 coding upstream 99208 31594477 ~ 31598310 (-)
LOC122344717 LOC107664759,LOC107725124,LOC107654315,LOC107734362,LOC107562201 coding upstream 104956 31600225 ~ 31613830 (-)
G40842 NA non-coding downstream 155218 31280177 ~ 31280431 (-)
G40841 NA non-coding downstream 162648 31272686 ~ 31273001 (-)
LOC122344940 NA non-coding downstream 213392 31220817 ~ 31222257 (-)
G40798 NA non-coding downstream 340726 31088192 ~ 31094923 (-)
G40794 NA non-coding downstream 396192 31038405 ~ 31039457 (-)
G41034 NA non-coding upstream 151589 31646858 ~ 31648612 (-)
G41023 NA non-coding upstream 160314 31655583 ~ 31701818 (-)
G41019 prdx4,LOC107665442,LOC107591478,LOC107734341,LOC107654298 non-coding upstream 188699 31683968 ~ 31684836 (-)
G41018 LOC107734365 non-coding upstream 196597 31691866 ~ 31695788 (-)
G41037 NA non-coding upstream 217082 31712351 ~ 31732259 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other downstream 85200 31331349 ~ 31350449 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 609291 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 642930 30789633 ~ 30792719 (-)
G40711 NA other downstream 702289 30631028 ~ 30733360 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 822508 30590843 ~ 30613141 (-)
apooa apoo other upstream 207184 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 226001 31721270 ~ 31722906 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 618627 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 718762 32214031 ~ 32293782 (-)
LOC122346085 LOC107748069,LOC107679343,LOC107594586 other upstream 788268 32283537 ~ 32314631 (-)

Expression


Co-expression Network