CI01000004_15091390_15096502 (GA45B, GADD45B, GADD45BB)


Basic Information

Item Value
gene id CI01000004_15091390_15096502
gene name GA45B, GADD45B, GADD45BB
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15091200 ~ 15097173 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15091390_15096502.mRNA
CTATAAAAACCTCCGCTCCCACAGCGTGCAGTCAAACACGAGCCGAGACAGTATCGTAGCGACAAGTATCGGAGCAGTGCGAGAGAGAAACCACTCGAAATCTCTGTGGATTACTACCGCCATATTCTCTGGAATTATATTATTTGGGGTAATTTCTATTTCTGGATTATAACATAATTTAATGACAAACATGACTCTGGAGGAAGTTGTTGGATGCAGCAGCACTGACAGAAAAATGGAAACAGTAAGTGAAGCTCTCGAGGAGCTGCTAGTGGCTGCACAACGACAAAACTGTCTGACAGTTGGAGTCTACGAGTCTGCACAACTCATGAATGTGGATCCAGACAGCGTGGTCCTCTGCGTTTTAGCGACTGATGAGGAGGACGAAAATGATGTTGCGCTTCAGATCCACTTCACGCTCATCCAAGCCTTCTGCTGTGACATCGACATCAACATTGTGCGCGTCTCCGGCATGAGGCGTTTGGCACAGGTTCTCGGGGAGCCTCTCTCCACTGACAGCAACGCCAATGAACCAAGAGACCTCCACTGCATACTTGTAACTACTATATTTTATGACTTTTCTGTGATGCCGTCTCACACTCAGGAAACACCATATCTGTCTGACTGAGGGTTACCGTTGGTAACAGAGATTCATTCATTAGTCACGTTAAACTGAAGTTGGGAACACATGGACTCCCTCCTGTGACTGATTGATTAGCAGAAGTTAAGTGCACCGGAGCCAGTGGGAAGTCAGGCACGCGCCCAGCAGCTCTGAGTCTGTAATCTGACAGCACACATTGCACAAAGACAATGCCACACACAAAGCCCTGACTACAAAACTTAAAGAAAGCATGTCCACTTCACAAAGACACAGGGAACGTTTATCAGCTTTAAACAGTGTCACGTGCTCCTAATCTTCATTTTGTGAAAATGGCTGTTTGCATTCTCCAAATGCAGGACCTGATCAAACCAACTGGTTTTTCATTTGAAGTTGTATTGTCACTTCCACTGATAAGCGGATCTAACTTCAGTGTTACCCGAAACGAATCAATCAAGCAAACATTTCTAAAGCCACGTATCATGCTCATATGTGAAAGCAATTATTAGGCTCCTGTTTCCTCAGCAGAAATCAATCAGTCTGGGGCAATCAGCAGTGGCGGAGAGAGACGACCGCTAATGCCAAACCTAATATTTCTGCAGGGCTCGGGGTCAGAACCACAGTGGCAGAAAGAAGGAGTTTTAAGAGCTACTCAAAACACATGGCCTACAATGAACAAAAGTTTTAATTATAGACAATAA
>TU38554
GAGACAGTATCGTAGCGACAAGTATCGGAGCAGTGCGAGAGAGAAACCACTCGAAATCTCTGTGGATTACTACCGCCATATTCTCTGGAATTATATTATTTGGGGTAATTTCTATTTCTGGATTATAACATAATTTAATGACAAACATGACTCTGGAGGAAGTTGTTGGATGCAGCAGCACTGACAGAAAAATGGAAACAGTAAGTGAAGCTCTCGAGGAGCTGCTAGTGGCTGCACAACGACAAAACTGTCTGACAGTTGGAGTCTACGAGTCTGCACAACTCATGAATGTGGATCCAGACAGCGTGGTCCTCTGCGTTTTAGCGACTGATGAGGAGGACGAAAATGATGTTGCGCTTCAGATCCACTTCACGCTCATCCAAGCCTTCTGCTGTGACATCGACATCAACATTGTGCGCGTCTCCGGCATGAGGCGTTTGGCACAGGTTCTCGGGGAGCCTCTCTCCACTGACAGCAACGCCAATGAACCAAGAGACCTCCACTGCATACTTGTAACTGTAAG

Function

symbol description
gadd45bb Acts upstream of or within somitogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including margin; mesoderm; retina; solid lens vesicle; and yolk syncytial layer. Orthologous to human GADD45B (growth arrest and DNA damage inducible beta).
gadd45b Involved in positive regulation of JNK cascade; positive regulation of apoptotic process; and positive regulation of p38MAPK cascade. Located in cytoplasm and nucleus.

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15091390_15096502.mRNA False 1299 mRNA 0.45 5 15091200 15097173
TU38554 True 523 TUCP 0.47 3 15091244 15091969

Neighbor

gene id symbol gene type direction distance location
CI01000004_15056504_15062261 RABGAP1L2 coding upstream 28020 15055922 ~ 15063180 (+)
CI01000004_15048166_15051524 NA coding upstream 38383 15048166 ~ 15052817 (+)
CI01000004_15010164_15028433 NRD1A, NRDC coding upstream 62492 15010164 ~ 15028708 (+)
CI01000004_14934532_14938094 NA coding upstream 153106 14933874 ~ 14938094 (+)
CI01000004_14919607_14929407 GOLIM4B coding upstream 161793 14919475 ~ 14929407 (+)
CI01000004_15110181_15110483 NA coding downstream 12425 15109598 ~ 15110625 (+)
CI01000004_15126731_15131774 NA coding downstream 29511 15126684 ~ 15132238 (+)
CI01000004_15200553_15209521 SLC1A8B coding downstream 101069 15198242 ~ 15209824 (+)
CI01000004_15229290_15233374 PEX19 coding downstream 131603 15228776 ~ 15234597 (+)
CI01000004_15237719_15253901 COPA coding downstream 140546 15237719 ~ 15254158 (+)
G34009 NA non-coding upstream 45755 15045242 ~ 15045445 (+)
G34004 NA non-coding upstream 54967 15036017 ~ 15036233 (+)
G33951 NA non-coding upstream 237758 14845345 ~ 14853442 (+)
G33924 NA non-coding upstream 282911 14768014 ~ 14808289 (+)
G33919 NA non-coding upstream 299085 14758132 ~ 14792115 (+)
G34027 NA non-coding downstream 6177 15103350 ~ 15103577 (+)
G34028 NA non-coding downstream 6793 15103966 ~ 15104168 (+)
G34031 NA non-coding downstream 9249 15106422 ~ 15106699 (+)
G34032 NA non-coding downstream 9563 15106736 ~ 15160060 (+)
G33896 NA non-coding downstream 126488 15223661 ~ 15223914 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1054300 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2435489 12646838 ~ 12652570 (+)
G31865 NA other upstream 2896053 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3423541 11666900 ~ 11667659 (+)
G31710 NA other upstream 3448800 11637251 ~ 11642400 (+)
G34220 NA other downstream 842184 15939357 ~ 15939950 (+)
G33815 NA other downstream 966242 16063415 ~ 16066464 (+)
G34400 NA other downstream 1880155 16971995 ~ 17025976 (+)
G34017 NA non-coding downstream 2136 15094105 ~ 15094375 (+)

Expression


Co-expression Network