LOC122346085 (LOC107748069,LOC107679343,LOC107594586)


Basic Information

Item Value
gene id LOC122346085
gene name LOC107748069,LOC107679343,LOC107594586
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32283537 ~ 32314631 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU60927
GACGGCCTGCACAGTTCTCACTGAACCCTGGTGGATTTATTCATCTCTTTCAGCTCTTTTTTTGACCCCTTTTTTCTCCACGCTCTAATATCTGTGTGTTATTGGAGTGTTCGCCTGCCATCATGGCGACGGGCGGCTCGCAGACGAACGCGAAGAGCTCTCTGAACGGGAGCATGGATTTATATCACAGCTGGTTCGGGTCTACAACTCCACGACCTCCTCTAAAAAACTACCTGCTCCTGACCATCCTTACCTGCTTCTGTCCAGCCTACCCTGTCAATATTTTAGCCCTGGTCTTCTCTGTAATGTCCAGAAATAGTTACGATCAGGGAGATTACGAGGGTTCAAGGCGTTTAGGGAAGATGGCGCTCTATGTGTCCATCGCCTCCATCATCATCGGCATCCTCATCATCACCATCTTCTGCGCTGTGCATTTTAGCGCGAAGGATGTGTAAGATGGCAGTGTTTTTGGCGAAGGACATCCACTGGGTCGCTCTGTCTGCTGAGATGTTTGTAATGAAACCGGGATCTGCAGCTCCCTGCTTTTAAAAGAGAGGTGGATGAGTTATGAGAATTTTGCTCGAGTAAATTTTATATACGCACCCGTGCACGTACCGTACtgaacatgtaaataattttgtctttttctaaTTCTTTTTCTGGCTATCCTGTATTGAAATGTACAGCTGCAAACGGATCCGGGGTTAAATCTCAATGCTAAAACGATCAATAATGACCTTGACGCAGTCGCAACGCATCACGCCGCGTCTCGAAAGCTCTTATTCGGTTCTGTAAAAACTACTGGAAATGTAAATATGACTCATTTTTGGTGCTTAACGATTCGCTCTGCCAGTCGATCGTTATAGTAATGAATGGGGTGTTCATATTCATAACTTAAGTGTGTCCGTTTAAATACTGATTCTGTGTATTAGTTAGTCAATTGTAGAGATGTTTTCACGAATTAACTAATAAAGTTCGtttataaagctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatat
>XM_043240757.1
ataTTTGCCAAATTTCGTTGTGACATGAAAAATCAGAAAATCTCACGAGCTCAAACTTTGCCGTGCTGGAACGCGTCCATGGGAAAGTGTCTCTTCTCCCTGATCCCATTACTCGTGGGTTCTTCTTGCCCAAACACCCTCCTGCCCAAAATACTCCTCATTTCATCTTGTTTCCCGACGGCCTGCACAGTTCTCACTGAACCCTGGTGGATTTATTCATCTCTTTCAGCTCTTTTTTTGACCCCTTTTTTCTCCACGCTCTAATATCTGTGTGTTATTGGAGTGTTCGCCTGCCATCATGGCGACGGGCGGCTCGCAGACGAACGCGAAGAGCTCTCTGAACGGGAGCATGGATTTATATCACAGCTGGTTCGGGTCTACAACTCCACGACCTCCTCTAAAAAACTACCTGCTCCTGACCATCCTTACCTGCTTCTGTCCAGCCTACCCTGTCAATATTTTAGCCCTGGTCTTCTCTGTAATGTCCAGAAATAGTTACGATCAGGGAGATTACGAGGGTTCAAGGCGTTTAGGGAAGATGGCGCTCTATGTGTCCATCGCCTCCATCATCATCGGCATCCTCATCATCACCATCTTCTGCGCTGTGCATTTTAGCGCGAAGGATGTGTAAGATGGCAGTGTTTTTGGCGAAGGACATCCACTGGGTCGCTCTGTCTGCTGAGATGTTTGTAATGAAACCGGGATCTGCAGCTCCCTGCTTTTAAAAGAGAGGTGGATGAGTTATGAGAATTTTGCTCGAGTAAATTTTATATACGCACCCGTGCACGTACCGTACtgaacatgtaaataattttgtctttttctaaTTCTTTTTCTGGCTATCCTGTATTGAAATGTACAGCTGCAAACGGATCCGGGGTTAAATCTCAATGCTAAAACGATCAATAATGACCTTGACGCAGTCGCAACGCATCACGCCGCGTCTCGAAAGCTCTTATTCGGTTCTGTAAAAACTACTGGAAATGTAAATATGACTCATTTTTGGTGCTTAACGATTCGCTCTGCCAGTCGATCGTTATAGTAATGAATGGGGTGTTCATATTCATAACTTAAGTGTGTCCGTTTAAATACTGATTCTGTGTATTAGTTAGTCAATTGTAGAGATGTTTTCACGAATTAACTAATAAAGTTCGtttataaagctgaaa

Function

NR:

description
PREDICTED: transmembrane protein 233-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60927 False 1040 TUCP 0.42 4 32283537 32314455
XM_043240757.1 True 1169 mRNA 0.44 3 32312799 32314631

Neighbor

gene id symbol gene type direction distance location
rabl6a rabl6a,LOC108427817,LOC107725084,LOC107667101,LOC105021747 coding downstream 179751 32082560 ~ 32103786 (-)
ajm1 zmp:0000000794,cunh9orf172,LOC107725135,LOC107666534,LOC107557588,LOC107715543,LOC107654331 coding downstream 216323 32049652 ~ 32067214 (-)
pbx3a pbx3a,LOC107668307,LOC107591489,LOC107725095,LOC107654303,LOC107715538,LOC107550583 coding downstream 267069 31979887 ~ 32016468 (-)
mvb12ba mvb12ba,mvb12b,LOC107591487,LOC107666228,LOC107654329,LOC107725155,LOC107557586 coding downstream 322689 31943855 ~ 31960848 (-)
lmx1ba lmx1b,lmx1ba,LOC107591520,LOC107668223,LOC107725103,LOC107654328,LOC107557569,LOC105902565 coding downstream 349064 31895803 ~ 31934473 (-)
LOC122345937 LOC107704040,LOC107557591,LOC107748061,LOC107725130,LOC103139561,LOC102299939,LOC100537556 coding upstream 1056 32315687 ~ 32342744 (-)
ostf1 ostf1,LOC107704065,LOC107748057,LOC107659617 coding upstream 101594 32416225 ~ 32421598 (-)
LOC122345374 LOC107748054,LOC107557581,LOC107704095,LOC107725138,LOC107594549 coding upstream 144827 32459458 ~ 32464623 (-)
bmpr1ba bmpr1ba,bmpr1b,LOC107725167,LOC107704129,LOC107594551,LOC107667882,LOC107725174 coding upstream 323629 32638260 ~ 32681474 (-)
pdlim5a pdlim5a,LOC107725153,LOC107704103,LOC107725180,LOC107594568,LOC107564363 coding upstream 369882 32684513 ~ 32719171 (-)
G41065 NA non-coding downstream 305071 31977714 ~ 31978466 (-)
G41064 NA non-coding downstream 306486 31975936 ~ 31977051 (-)
G41047 NA non-coding downstream 378750 31723742 ~ 31904787 (-)
G41051 NA non-coding downstream 485269 31797709 ~ 31798268 (-)
G41037 NA non-coding downstream 551278 31712351 ~ 31732259 (-)
G41177 NA non-coding upstream 71496 32386127 ~ 32386472 (-)
G41198 NA non-coding upstream 123988 32438619 ~ 32439145 (-)
G41191 NA non-coding upstream 129651 32444282 ~ 32445281 (-)
G41216 NA non-coding upstream 162631 32477262 ~ 32477840 (-)
G41217 NA non-coding upstream 165724 32480355 ~ 32480713 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other downstream 109473 32113896 ~ 32174064 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other downstream 560631 31721270 ~ 31722906 (-)
apooa apoo other downstream 571800 31702453 ~ 31711737 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other downstream 933088 31331349 ~ 31350449 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 1457179 30817732 ~ 30826358 (-)
LOC122345737 egflam,LOC107704151,LOC107667876,LOC107725173,LOC107725080,LOC107564362 other upstream 423786 32738417 ~ 32757869 (-)

Expression


Co-expression Network