CI01000004_15110181_15110483


Basic Information

Item Value
gene id CI01000004_15110181_15110483
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15109598 ~ 15110625 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15110181_15110483.mRNA
ATTTAAAAAAAAAAGATAAAGAGTAGATAACATGCACTCAGACGATAGGTAGATAGATAGATAGATAGATAGATAGATAGATATGGTCAGATTGGATGGATGGATAGATGGATGGATGGAAGGAAATGTCAGATTAGATAGATTGTTTTCAAACAGGTTTCTCAAATCTATCATTACTTCTGCAAATTCATTTGGTCTTGCAGAAATTAATGCAAATGGAACTGCAAAATACCCCAAAACATATTTGCACAACATATTTAATAATTTAAAAAATGATGTAATTTGCATCTGTTTTCATAAATTGTACTGTTACCACACCATTTGCTTAGAACAAATCAGTCAAGCATGTGGAATAAACAGATCCACATCAATGCAGAGTAACATTTTGTCTTTATTTTATTTCATTTCATCTACTTTTTCCGATATCATCATTTTTAAACAGCAATATCCACAAAATATTAACATTGTGCAAGAAAACATGATTTATGGCACATCCGAGAAGAACAATTACAAAAAATAGATATATTTCTTCATAATCAAGGCAGAAAGATACATATGCATACACAGGAAAAAACACAAAGTAATGGGACAGGCTGAGATTGAAATCTACTGGCTAAGGACTCGGCTACAGATATTACCCACACAAAGCCTAAATCTCACCTCTCATGGTCATGAAAGAGCTCGATGGTGTGTGAAGTCGAACAACGTTTGGGAACGAGGAATTGAGGTTAAGGTATCACGGCCTTCTGAGCACCTTAAGTGTTCTCGCTGCGCGCGACGCTCGCGTGTCCTAGCGCTCGCTAACAACGGGTCTCACAACGTAGCAAGACGTTTTCTTCGCGGAGTCTTATTAAACCTAAGTGCGGGGTGTTACTTAAGGTTGTAAGCGCTAAAGTGTATCCCAACACTGTGAGTCAAGATGGTGGAGAACTCAATGCTAACAAGCTAACTTAGCTTAGCTGACTTTCACAGTGTTTGCTCCAGTGTAATACCATCAAATGTGGTACAGCGAGTTTGGTGGCTGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15110181_15110483.mRNA True 1028 mRNA 0.38 1 15109598 15110625

Neighbor

gene id symbol gene type direction distance location
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB coding upstream 12425 15091200 ~ 15097173 (+)
CI01000004_15056504_15062261 RABGAP1L2 coding upstream 46418 15055922 ~ 15063180 (+)
CI01000004_15048166_15051524 NA coding upstream 56781 15048166 ~ 15052817 (+)
CI01000004_15010164_15028433 NRD1A, NRDC coding upstream 80890 15010164 ~ 15028708 (+)
CI01000004_14934532_14938094 NA coding upstream 171504 14933874 ~ 14938094 (+)
CI01000004_15126731_15131774 NA coding downstream 16059 15126684 ~ 15132238 (+)
CI01000004_15200553_15209521 SLC1A8B coding downstream 87617 15198242 ~ 15209824 (+)
CI01000004_15229290_15233374 PEX19 coding downstream 118151 15228776 ~ 15234597 (+)
CI01000004_15237719_15253901 COPA coding downstream 127094 15237719 ~ 15254158 (+)
CI01000004_15260416_15262090 APODA.2 coding downstream 149614 15260239 ~ 15262240 (+)
G34031 NA non-coding upstream 2899 15106422 ~ 15106699 (+)
G34028 NA non-coding upstream 5430 15103966 ~ 15104168 (+)
G34027 NA non-coding upstream 6021 15103350 ~ 15103577 (+)
G34017 NA non-coding upstream 15223 15094105 ~ 15094375 (+)
G34009 NA non-coding upstream 64153 15045242 ~ 15045445 (+)
G33896 NA non-coding downstream 113036 15223661 ~ 15223914 (+)
G34055 NA non-coding downstream 125505 15236130 ~ 15236383 (+)
G34061 NA non-coding downstream 161019 15271644 ~ 15271905 (+)
G33857 NA non-coding downstream 308636 15419261 ~ 15425806 (+)
G34090 NA non-coding downstream 322543 15433168 ~ 15433373 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1072698 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2453887 12646838 ~ 12652570 (+)
G31865 NA other upstream 2914451 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3441939 11666900 ~ 11667659 (+)
G34220 NA other downstream 828732 15939357 ~ 15939950 (+)
G33815 NA other downstream 952790 16063415 ~ 16066464 (+)
G34400 NA other downstream 1866703 16971995 ~ 17025976 (+)

Expression


Co-expression Network