LOC122345737 (egflam,LOC107704151,LOC107667876,LOC107725173,LOC107725080,LOC107564362)


Basic Information

Item Value
gene id LOC122345737
gene name egflam,LOC107704151,LOC107667876,LOC107725173,LOC107725080,LOC107564362
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32738417 ~ 32757869 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU61129
AACTTTCCGTACGCCTTTGTTTTTGGGCGGAGCTCCGAATGCCTATTGGCTGGTGAGGGCAGTGGGCACCAATCGCGGCTTCCAGGGCTGCATGCAGAGTCTGACCGTCAACAGTAAAGCCATTGACATCCGACCCTGGCCTAAAGGAAATGCACTGAGTGGAGCAGACATCGgcgAGTGCagtaacagtgtgtgtgagaaggtCACCTGTGCTAATGGAGGAATCTGCTTTGCCAACCGCGCGGACGGCTTCATCTGCCTGTGTCCTCTGGGCTATAAAGGCTTCCTCTGCGAGGAGAGTTTCCTGCTGTCTCTACCCCAGTTTAACGAGAGCATGTACTCGTACGCCAGCGCCCCCTGGCCTCAGCCCTCCCACAACTACCTGTCTTTCATGGAGTTTGAGATGACCTTCCAGCCGACCAATCCTGACGGCACGCTGCTCTACACCGACG
>XM_043240162.1
CGCAATCGTGAAGGATTGAAAATGCGCCTCCAGAAGAGAGTGATGGTGCTTCTTGCGTTGGTGTGGATGTGTGATTTCGCTCTTTGCGCAAGAAAGTCTAGTGCACGCAAGTCGGAGAGGTTGAGTCCACCGCTGGACATTCAGCTGGAGACGGTCAACTGCACAGCGTTTAGCGTTCGGTGGAAAATGCCCCGTAGACACGTCAGCACTATCACTGGCTACAAGGTGTTTTACACGGAGATGAGGAATAATCGTCCAACTAGCAACGCTGTTGCCCTGGAAGTACCATTGAGTTTGGAAATGCTCACAACTGGACAGTTTGATGGCCAAGCCAGCTTTGATGTGGTGATCGGGAACTTGAAGGTGGCCACGCAGTACCGTGTCAGTGTGGGGGCGTACGGCTGGGCAGGGGAGGGCCGACCCAGCATGCCCCGGGACATCGGCACTGGCTCTCTCGAAAAGTGCATGCCTCCTGCGCCTCCGACCCAGCCTAAAGTGGTCCCAGTGTCAGACACAGAACTGGCCTTGTCTTGGCAGCATGGAGAGAGTGAAGGAAGTGCACCTGTGCTATACTTCCTTGTGGCGTATATCAGGCCAGAGATGGACACTGAATGGATGTACATCAGAGAGCCAGTAGAGTCGAACTCTATGGTGCTCAAGGGTCTGCTTCCTGAGACGGAGTATCAGTTTGTCATCAGGGCTGTGAACGCGCACGGGATCAGTCCTCCCAGTGCCATTAACAACCCCGTGCGCACTCTCGgtTCATCAGATATAGGCAGTGGAGACTACGATGTTTTCGTCTCAAACTCTGACAGTAAAGATGAGGACGGGTTTGAAATCGATGACTCAGATTATGACGTCTTCATTGAGGAGATAAAGTCGTTTCCTAGCGGTAAGAAAAGCGGCAGACGGTCTCAGCTCCGCTCCCGCGTCGGGACTCCCGGAAAcggaaatgttatttataggATGCGTACACCTGTTTCCCAAAATATCAGCTTCACTCCAACAGCAGCAACAGCATGGACCACATCAACAGCAGCTCCTGTAACCACAGCAACACTCACTAGCTCCTCCCCCAGGACCATCTCACCTGTTATACTGACAGGCTCCGCCCCCAGCACACCTCCTCCCGTGGTTCCTTCTCCCAGTCCGTCAATGACGCCGTGGAAAGACGAAAGACCCCGGGTCTATGACGTACCGTGTGACGAGACGGTCTGCCCTCCTGACAGCTTCTGCCTCAACGATTATGACACCGGAGGCTCTAGATGTCACTGCAACCTCGGCCGACAGGGAGACTTCTGCTCAGAGGGTCTGACGGTAAATTTCCCCAAATTCTACGGCTACTCCCACATGACGTTTGAACCTCTTAAAAACTCTTATCAGAGCTTCCAGATCAGCCTGGAGTTTAAGGCAGAGGCTGAGGACGGATTGCTGTTGTATTGTGGAGAAAATGAGCACGGTAGAGGAGATTTCACCTCCCTGGCCCTCGTACGGGGAAAACTACACTACAGgtttaactgcGGTACGGGTGCAGCTCAGATCGTGAGTGACAGCTCTATTGTGGTTGGACAGTGGCACGCTGTCACAATATTTCGAGACGGCATGAATGGCTGGCTGAGATTAGACAACGACACACCGGTGTCGGGCCGTTCTCAGgGTCAGTACACTAAAATAACTTTCCGTACGCCTTTGTTTTTGGGCGGAGCTCCGAATGCCTATTGGCTGGTGAGGGCAGTGGGCACCAATCGCGGCTTCCAGGGCTGCATGCAGAGTCTGACCGTCAACAGTAAAGCCATTGACATCCGACCCTGGCCTAAAGGAAATGCACTGAGTGGAGCAGACATCGgcgAGTGCagtaacagtgtgtgtgagaaggtCACCTGTGCTAATGGAGGAATCTGCTTTGCCAACCGCGCGGACGGCTTCATCTGCCTGTGTCCTCTGGGCTATAAAGGCTTCCTCTGCGAGGAGAGTTTCCTGCTGTCTCTACCCCAGTTTAACGAGAGCATGTACTCGTACGCCAGCGCCCCCTGGCCTCAGCCCTCCCACAACTACCTGTCTTTCATGGAGTTTGAGATGACCTTCCAGCCGACCAATCCTGACGGCACGCTGCTCTACACCGACGATGCAGCTAGTCGTGATTTCCTGTCAATCAGCCTGGTGGCAGGATACGTGGAGTTCCGCTTCGACTGCGGCTCAGGAGCTACAGTGATCAGGAGCGAAGAGGCCGTTGCTATGGACGTGTGGCACGAGTTGCGTGTCTCTCGTACGgcaaaaaatggcattttgcAGGTAGACAACCAGAGACCAGTGGAAGGCATGGCAGAGggtGCATTTACACAGATAAAGTGTAGTTCTCCTCTCTATATTGGAGGAGTCCCTAATTATGATATTACTAAGACGAGCGCTGGGGTCCTGAGACCCTTCAGTGGAACGGTGCAGAAGATCAGTCTGAATGACCGCACTATAGAGCTGAACCCCGGTCAGGCTTTTGGGGTGAACGTGTTGAACGCACATCACCCGTGTGTGGAGAACCCGTGCGCTAACGGAGGAACGTGTAGGCCGAAGTGGGACGGATACGACTGTGACTGTGCGCTTGGGTATGATGGGAAACACTGTCAGAAAGAATGTGGGAATTATTGCTTAAACACTGTCACTGAGTCTATCGAGATCCCTCAGTTCACTGGACGCAGCTATCTGACGTACGACAACAGAGATATCCTCAAAAGggTATCAGGTTCCAGAACAAACATGTTCATGCGTTTTAAGAGCACTTCTAAAGACGGTCTTTTACTGTGGCGAGGGGACAGTCCAATGAGAGCCAACAGTGACTATCTGTCTCTGGGCCTTCAAGACGGAGCGCTCATTTTCAGTTATAATCTTGGTAGCGGGGCCGGCGCTGTGGTCATTAATGGCACGTTTAGTGACGGCAAATGGCACAGAGTGAAGGCTGTCAGGGATGGACAGTCTGGAAAACTAACCGTCGATGATTACGGAGCTAAAACCGGCAGATCTCCTGGAAAGATGAGACAGCTGAACATCAATGGTGACCTTTACATTGGTGGGATGAAGGAGATTGCGTTGCACACTAACAGGCAGTACATGCGAGGTTTAGTGGGATGCATTTCTCATTTCACTCTGGCCACGGACTACCATCTGTCTCTGGTTGACGATGCAGCTGACGGCAAAAACATCAACACCTGCACCAACTGAACACCTCGGAAACACCAGCTACGGATCTCCAACATCTGTGACCCGAGAACAACATCATCGAAATAACAGCAAAACCAGGAACACCGTCATCACTGACCTCCGAGAAGCAACGGAGACATCTGCAGTTGCAGCCAAAACGAATAAACCCCCCGTTCAGCCCTTCGAGACGATCGTAGCTTGTCAACAGTGAGCTGTAACGTAATAACAGAGCCAAACCTACAGCATTCAGATTGGAACCTTGTAAATGTCTTGAGATGAGGATGAAAGTGTTTTCCATTATACACCAAATTCCTGCACCACCAGCAAGAGTCGGgcgtttttttctttaacttctGCACTCGGTGTAATAACGaaacagttttcaaaaaatgaGCATCTCGGTAAATAAATGTTAGCTCGGAGGTTGCTTGCGCATCATGCGACAATTGATCTTTTAAATCATACTCAATAGTCACACATAAGCATATTTATACGCCAAACTGTGTATGTTTTCACATCTACAAGCCCTTTTTTATGGCACTTACTGTATGATTCTGCAACCACTTCTTGTTAGTCAGATGGGTCCTCTTGTGTTACTCTCTACAAGGGCAAAGATGAGaggcaaatgtatttatatgattattgctttttttataccATTAATTTTGAATCAGTATTCAAACCCACGAGTTTATAGAGAAAGATGGTTGTGATAAATAGCTGTCACGTAGTGTAGTAAACTTCTCTCTTTTGAGGTAATGTTTGCACTGTGAGGTCTTAGGCTGCTAGTGGTGGAAGGACAAAGtgatatgatttatttttttttttttttgtatcagaGGTTTCTCTTTAACGTCTCTGCCTCTCTTTTCCTTCTAGCTACACTCTTTTATGAATCCCAAAGACTCTTTTATAGCTGCCGtagctctttatttttgttcGTGTAAGTTAATGGATGTCTGCAAAAAATTGCATCTCTTAATTTTTTCTGCCTTGATGTTTTAAAAGCCTATCATTTTGCCATCAAAAACGTGACTTattgatttcattaaataaaaagaatgtcaGACGCATTTTATGCGGGtgtatctttaaatatataggTTGTGACGAACC

Function

symbol description
egflam Predicted to enable calcium ion binding activity and glycosaminoglycan binding activity. Predicted to be involved in animal organ morphogenesis and tissue development. Predicted to act upstream of or within extracellular matrix organization; peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan; and positive regulation of cell-substrate adhesion. Part of cell surface.

NR:

description
PREDICTED: pikachurin-like

GO: NA

KEGG:

id description
K24341 EGFRAM; pikachurin

RNA

RNA id representative length rna type GC content exon number start site end site
TU61129 False 452 TUCP 0.56 3 32744167 32745881
XM_043240162.1 True 4308 mRNA 0.49 24 32738417 32757869

Neighbor

gene id symbol gene type direction distance location
opn4xb opn4xb,LOC107704143,LOC107725176,LOC107667875,LOC107564366 coding downstream 4685 32724898 ~ 32733732 (-)
pdlim5a pdlim5a,LOC107725153,LOC107704103,LOC107725180,LOC107594568,LOC107564363 coding downstream 19246 32684513 ~ 32719171 (-)
bmpr1ba bmpr1ba,bmpr1b,LOC107725167,LOC107704129,LOC107594551,LOC107667882,LOC107725174 coding downstream 56943 32638260 ~ 32681474 (-)
LOC122345374 LOC107748054,LOC107557581,LOC107704095,LOC107725138,LOC107594549 coding downstream 273794 32459458 ~ 32464623 (-)
ostf1 ostf1,LOC107704065,LOC107748057,LOC107659617 coding downstream 316819 32416225 ~ 32421598 (-)
nipbla nipbla,LOC107667879,LOC107704848,LOC107725079,LOC107594572,LOC107571026 coding upstream 12360 32770229 ~ 32799945 (-)
slc1a3a slc1a3a,LOC107704160,LOC107725163,LOC107594554,LOC107667878,LOC107725178 coding upstream 44149 32802018 ~ 32812625 (-)
G41273 NA non-coding downstream 211348 32513392 ~ 32527069 (-)
G41217 NA non-coding downstream 257704 32480355 ~ 32480713 (-)
G41216 NA non-coding downstream 260577 32477262 ~ 32477840 (-)
G41191 NA non-coding downstream 293136 32444282 ~ 32445281 (-)
G41198 NA non-coding downstream 299272 32438619 ~ 32439145 (-)
G41303 NA non-coding upstream 9317 32767186 ~ 32767409 (-)
LOC122346085 LOC107748069,LOC107679343,LOC107594586 other downstream 423786 32283537 ~ 32314631 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other downstream 444635 32214031 ~ 32293782 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other downstream 564353 32113896 ~ 32174064 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other downstream 1015511 31721270 ~ 31722906 (-)
apooa apoo other downstream 1026680 31702453 ~ 31711737 (-)

Expression


Co-expression Network