ercc6l (ercc6l,LOC107687665,LOC107726361,LOC107592361)


Basic Information

Item Value
gene id ercc6l
gene name ercc6l,LOC107687665,LOC107726361,LOC107592361
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11064771 ~ 11070769 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238145.1
AAAACGTTTGTTCAAACCCGCTTCCGCAATCGAGGCGATGAGACATATGCCGTTTTTTCAAGGAAAATACCTAAAACATAAAGGGAAACATGCAGAGCAATAACGTTGAAGAAATCACGGACAAGTTAGAGGGTTTTCTGTCTATAGACACAGAGAAGATGGACAAATACGACAGgtaCCGGCAGGAGGGGAAGGAGGCTGCCATGAGCGGTGATCTGCCACGTGCCCTTGAGCTGTTTCAGCTGGCTTACCAGCTGCAGCCAAGTGAAAAACTGAAGAAGAGGATCCAGGCCATTCAGGACATCATGCAGAGAgaagaggatgaagatgaagaggaggaggagtttataaacataaataatagtgGATTGATGCTTTACAAAGGCCTCTATGACAAACTGTACGACCATCAGAAAGATGGTGTGGCGTTCCTGTACAGTCTCTACCGTGACGGACGGAAAGGAGGAATCCTGGCTGATGACATGGGCCTCGGCAAGACGATTcaagtcatttcatttttgtcaggAATGTATGATGCAGAGCTGGCCAATCATACCCTGTTGGTCATGCCTACCTCGCTCATTAAGAACTGGGTACGTGAATTTGCCAAGTGGACCCCTGGCATGAGGGTGAAAGAGTTTCACGGCGCCAGCAAAACTGAGCGAAACAGGAACCTGGAGCGAATTCAGCGCAAGGGAGGAGTTATCATTACCACCTACCAGATGCTCATCAACAACTACGAGCAACTAGGATCATATGACCAACGCGAGTTCAAGTGGGACTATGTCATCCTGGACGAGGCCCACAAAATCAAAACCTCATCCACAAAAACGGCTAAAAGCGCTCACGCCATCCCTGCTAAACACCGTGTGCTACTGACAGGCACTCCAGTTCAGAATAACCTACGAGAGATGTGGGCGCTGTTCGACTTTGCTTGCCAGGGTTCGCTTCTGGGAACCtctaaaacattcaaaactgaATATGAGAATCCAATCACTCGTGCAAGGGAGAAAGACGCCACCCCTGGAGAGAAAGCACTTGGATTGAAGATTTCTCAGAACTTAATGGACATCATCCAACCGTATTTTCTCAGGCGGACCAAAGCAGATGTTCAGCACAAGAAGCAAAAGCGTAAAGAAGGCTACGAAGATGAGGAAGATCAAGAGAACAAATGTCCAAATGCTGGCGACGGAGCAGAGATGCCGTCGCTGACGAGAAAGAACGATCTCATCGTGTGGACGTACCTCAGCTCGGTGCAGGAGGACATTTATAACCAGTTCATCTCGTTGGACCATATTAAGCAGTTGCTGACGACTACCAGGTCACTGCTTGCAGAGCTTACGGTGTTGAAGAAGCTCTGTGACCACCCCAGACTGCTGTCAAATCGAGCTGTGACTCAGCTAGGCCTGGAGCAAGGTTCTGTCTCTGATGCCATCCATCCAGACGATGATACGGAGTCAGCTGTGAGTCAGATCGATAAAATTTCAGATGACACTTTGGTTGCGGAGTCTGGGAAGCTGCAGTTTCTCGTGTCTCTACTGGAATGTCTCCGTGAAGAGGGCCATCGGACCCTGATCTTCTCTCAGTCGAGGAAGATGCTAGACATCATGGAGCGTGTCCTGCGAAACAGAAACTTTCGCCTGCTGCGTTTGGATGGCACAGTGACTCAGCTGGCAGAAAGGGAGAAGCGTATCACGCTgttccagacagacagacgttACACAATATTCCTCCTCACCACTCAGGTGGGTGGAGTCGGCATCACGCTGACTGCAGCAAACCGTGTTGTGATCTTTGACCCCAGCTGGAACCCCGCGACAGATGCTCAGGCTGTGGACCGCGCTTACAGAATTGGTCAAACTGAAAATGTCATCATCTACCGACTCATCACCTGTGGCACTGTGGAGGAGAAGATCTACCGCAGACagGTGTTTAAAGACTCCCTCATCCGGCAGACAACCGGTGATAAGAAGAACCCTTTCCGTTACTTCAGTAAGCAAGAGCTGCGTGAGCTGTTTAAACTTGAAGACACACGTTCATCCACCACTCAGCAGCAGCTTCAGGCCATGCACTCACATAACCGTCGCTCTGACACCAGCCTGGACCACCACATCGCTCGCATTCACACCATGGAGATGTTCGGCATCTCTGATCATGACCTCATGTTCACTAAAGAGGTGGCAGCCGATGAAGATGACCCTGAGGACGCAGAGTCACATCACTACATACAAACACGTGTCCAGAAAGCACAAGAGCTCATGCAGGCAGAATCAGAACTGCACGGTCAGCTCTTGGACAGCATGGCCCAGAACACTGAACCCACTTGGCTCAGGCAAATGGACCAGACGAAATCTGCTGGTATAAAGCGCCCGGCCCCTCCACGTGTCAAAAAAGAGCCTGTGACAGTGGATCTGACACACAACAGTTACGATGAATCAGAACCAGAGGAAGACGAGAACTATCCACCAGTTGACGATGCGGAGGTGGAGGTTGTAAGTGAGAAAGTGCAAATTGTAGATGAAGACGACGAGTTGGAAAATGAGACTCCTTGCTCTGCTGaagaaataaatgtgcatgTTAGTCCCACTGCTGACAAGTTAGCTCAACAAGCTGTGATCACGCTGGATGACAGTTTAGATGATGAGGACAAGTTTTACATTAATGCAgcatcagaaaaacaaaacttgccAAGTCCTTCTGGCCAGTTTCCGAAGTTAGAAGAACTTTCTATTGCATCTGAAGCTCTTGGTAATGAAGAGGTTCAGGTGGACATGCCtgatttaaagatgttttcatCACCCCAATCTCCAAATGAGGCCACAGCAAGAGAATCTTTCAAAGCAGAGATGGAAGTGCTTCAGGGAAACTTCAACTTGCAGTTGGAAGACAGTGCCGATATGTTCTCAGTCGAAGAAGAGGAAGTTTGTGAGGTTGAGGAGTCGCTAGCTGAGGAAAGTCCCGGATTTCAGCTTCAGATGGACATTAGTGGAGAGAGGCTGGAAGATGCGAGTATCCATGAAAGCATACAAGATGGTAACCAAAACAAAGCTGAAGTCAGCAACTGTAACAACAGTGAGGTCTTCAACTCTAACACTGGTGAAGTCAGCAAGCATCATGAATCTTCTCTGAGGATCCGTTCTGCTCCGGACACACCTGCGGACGACTCCTTTGTGCATTCTgttcagagaaagaaaaggcaGGTCATCTCTGACACTGATGAAGAAGAcggaggagaagaagaggagtCAGAGAAGCCATGTTTAACGAGCAGTCCATTGACCAATGGCTTCAGCAGGCTGGGCTCTTCAACACCAAAATCCACTATGACTGATGGCGGTCAACTACGCCGCAGCTTGAACGCTTCGGTGGCATCCAGAAGGTCCTTCGTAGTGTCCATGCTGGAGAATGAGTCGGATGAGGAGTCAGCAGAGCACAGTGAAGATGGAACCAAATCCTATGAGAAATCAGAAGCCAGTGAAAGTCATGCTGAAGAATCAATGGTGGAAGAGGAGGAACCCAGTGGAGACCAAACCGAATCCTATGAGATATCACAAGCCAGTGAAAGTCACGCTGATGAATCCGTGGTGGAAGAGGAGGAATCCAGTGGAGACCAAACCAAATCCTATGAGATATCACAAGACAGTGAAGTGCATGGAAATGAGTTTGTGGTAGAAGAGGAGGAACCCAGTGGAGAGACTTTAAACTCGGAAGAGTCCTCAAGTCACGAGGAGCTTGAAGAGGTGGAAGAAAGCATAGATTCAAGAGGAAACCGGGAGCATGAAGAATGGCACAGTGCTCTGCTTGAATCCACTGCTGATGTTGAACTAGACTCTAATGAAATGATGGACCAGTGTGCCCCCCAAAAAATCCCTCTGGAAACACATATTCTTCCTGCTTACTCTACAGTAAGTGATGTGTCTGCTGCTAAACCCTCTGAGAACACGTATGAGATGCTGGTCCTGTCTGGAAAACAGTGTTTGGCAGAAGGGAGGAAGCAGGCTGCTCTGGATTTCTTTCTGAAAGCCATAGACATTAATACGGGTGATGCTGAGATCCAGCTCTTGATCATTCAGCTATACAGGCAGCTTAGCcaatagtaatattaaagtGTGCGTTATCATATCTGTACCATGTTTGaccaaactttttttctgtctgttggTAAAAAGCAATTGCAGATTGCATGTGGATAAAACAATCTGTACTGATCAGAGGGACGTGTTAAGAATACGTGTTAAAAATATGCTgtatatgttaatattgttaGTGGATTTTCTCAATAATTCCTctgcatgtttatttgtttattttgatatcTTTAGTTTCAAATTGTTCAGTTTATATTATTctgacataaaaaataattgtgggaaaaaataataaattcttgAGTTTTGTA

Function

symbol description
ercc6l Predicted to enable DNA translocase activity. Predicted to act upstream of or within cell division and intein-mediated protein splicing. Predicted to be located in kinetochore. Orthologous to human ERCC6L (ERCC excision repair 6 like, spindle assembly checkpoint helicase).

NR:

description
DNA excision repair protein ERCC-6-like isoform X2

GO:

id name namespace
GO:0016539 intein-mediated protein splicing biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K20093 ERCC6L, PICH; DNA excision repair protein ERCC-6-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238145.1 True 4399 mRNA 0.47 4 11064771 11070769

Neighbor

gene id symbol gene type direction distance location
ctdnep1a ctdnep1,LOC107672750,LOC107744461,LOC107599947,LOC107687669,LOC106577558 coding downstream 45929 11013727 ~ 11018842 (-)
gabarapa gabarapa,gabarap,LOC107687670,LOC107744462,LOC107592288,LOC107599946,LOC107726389 coding downstream 52361 11010320 ~ 11012410 (-)
gps2 gps2,LOC107687671,LOC107726390,LOC107592289,LOC107672761 coding downstream 54819 11004834 ~ 11009952 (-)
tp53 LOC107744460,LOC107687672,LOC107599945,LOC107672786,LOC107726386 coding downstream 61594 10992741 ~ 11003177 (-)
si:ch211-114c12.2 si:ch211-114c12.2,LOC107744458,LOC107687673,LOC107592292,LOC107672733,LOC107726373,LOC107599944 coding downstream 84845 10973213 ~ 10979926 (-)
gja2 cx39.9,LOC107597224,LOC107687660,LOC107747814,LOC107732602,LOC107680361,LOC107592390 coding upstream 118564 11189333 ~ 11192258 (-)
gjb1a cx27.5,LOC107597344,LOC107687661,LOC107592389,LOC107680359,LOC107732608,LOC105893222 coding upstream 122700 11193469 ~ 11197204 (-)
kat5a kat5a,LOC107597226,LOC107592273,LOC107680373,LOC107732605,LOC107687657 coding upstream 133709 11204478 ~ 11209441 (-)
si:dkey-125i10.3 NA coding upstream 260220 11330989 ~ 11336101 (-)
agtr2 LOC107672423,LOC107597233,LOC107733228,LOC107680405,LOC107592269,LOC107732613 coding upstream 267097 11337866 ~ 11345096 (-)
G35423 NA non-coding downstream 324 11062900 ~ 11064447 (-)
G35422 map7d2a,LOC107754729,LOC107687666,LOC107599951,LOC107726367 non-coding downstream 1883 11060938 ~ 11062888 (-)
G35410 NA non-coding downstream 25539 11038690 ~ 11039232 (-)
G35388 NA non-coding downstream 125285 10938695 ~ 10939486 (-)
G35385 NA non-coding downstream 131026 10932350 ~ 10933745 (-)
G35441 LOC107747818,LOC107680407,LOC107687663 non-coding upstream 31884 11102653 ~ 11124347 (-)
G35467 NA non-coding upstream 44241 11115010 ~ 11119227 (-)
G35479 LOC107687695,LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107687664 non-coding upstream 75204 11145973 ~ 11150772 (-)
G35501 fam76b,LOC107680374,LOC107592275,LOC107687655,LOC107597227 non-coding upstream 141270 11212039 ~ 11213737 (-)
G35499 NA non-coding upstream 149199 11219968 ~ 11220891 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 95653 10960311 ~ 10969118 (-)
G35384 NA other downstream 138608 10923927 ~ 10926163 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other downstream 190707 10868364 ~ 10874064 (-)
G35122 NA other downstream 603062 10461208 ~ 10461709 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other downstream 729428 10324959 ~ 10335343 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other upstream 349186 11419955 ~ 11467122 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other upstream 513011 11583780 ~ 11652627 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other upstream 724887 11795656 ~ 11815944 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other upstream 1094634 12165403 ~ 12169410 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 1247034 12317803 ~ 12319685 (-)

Expression


Co-expression Network