LOC122344637


Basic Information

Item Value
gene id LOC122344637
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13792143 ~ 13796337 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238159.1
AGCAAGAAAAAGGAGGTGATTGTTGGggagttagagagagagagtgttgcTGTAGCAAGGGAATGTGAGCAAAGGAAAGAAGACACCAGAAAAATCCTGTCAGATTTTAAGATCGTAAGATAATATTTCTGTTCGACTACCGACAAAATAGcaGAAATTATGTTGGGGTTTGGACGTCCTTTCATCCTTCTCCTCATCATCAACTTCCTGGACCTCTCCTTTGtgtcatcttcatcatctcaGAACGCCACTCGACCCCGTGGCCACCCTTCCGGAGAGAATTACGACCAATATGAGGACTTCACCACTGAGCCTCCCAGCTCGTCCTCTACCAACTCTGAATACCCAGATCTCAATCCGTGCGATTATGATATGTGTGTGGAGCAGCAGCACACCTGCCAAGAGCTGAGAGATGCCACAGGCTGCCTCTGCCCGGGGCTGAGCAATATTTTCACTCGCCCGAGTCCACCGCGCCTCTCGTATCTAACTCAAAAGGGTAGCAAAGAGGTTCTGGTACACTGGTGTGCTCCCACTTCCTTTGTCACTCACTACATAGTCTGGGTGAGTGGGAAGTCCGTGAATAAGAATATACATgtggaggagagaaagagggacGCGGTAATGGAGGATGTTGAGGCTGGTGCTCGCATATGTGTACAGGCGGTAAATAAAGGCGGCGTCAGTGCAGATGACGATCAATCTTGTGACACATTTGAACCCCAAAATACAGACACCGGACTTGCGCTGAAGCTGGGCATTATTGGGGGTGTGGCGGGACTCATACTGCTGCTGATTCTGGCTCTGCTGCTTTGGAGACACAAATCACGGCAGAAATCCTCAGCGCGGACCAAGACTGAGGGAGTTTTGTaacgtctgtgtgtgtatgttggcAAAAAATGGACTTTTACTTAATCTGGGTATGAATGACGGGAGCAGGTGAATGACTGTGTACTGATCGCTTGCTGTGAGTGTGCTGGGTGGTGTTTGAATGACTCGGTGGACATGAACAGAAAGAGAAGGTGGAGGAATGACTCAGCACATTCTTCTCATTTGCTCGTCAGTGTCTACCAATGTGGTTTAGGACAGAGACAAATCGCATACTGCTGGTGTGCTGACTCCAATAATGAGCACCATTTCAAGCCCACTTCCTGATCAcgaacacattttaaacttctgtttcttcatcctgtatttgttttcaaagaaaaaggGCTGAATCACAGCGTTTAGGTTTAGGCCTGGATCAGATCAAATGGTTAGTACATATTTTAGGTCACTTTCGTAAGAAAGGAGTTTGCTAAGAGAATGTGTGTGAATCTtacaaaatgaaagatttttgtattttttggaaGTTTTGCTTtgtgatataataaaatatatattcccaTACAGTA
>XM_043238160.1
AAAAAGGAGGTGATTGTTGGggagttagagagagagagtgttgcTGTAGCAAGGGAATGTGAGCAAAGGAAAGAAGACACCAGAAAAATCCTGTCAGATTTTAAGATCGTAAGATAATATTTCTGTTCGACTACCGACAAAATAGAAATTATGTTGGGGTTTGGACGTCCTTTCATCCTTCTCCTCATCATCAACTTCCTGGACCTCTCCTTTGtgtcatcttcatcatctcaGAACGCCACTCGACCCCGTGGCCACCCTTCCGGAGAGAATTACGACCAATATGAGGACTTCACCACTGAGCCTCCCAGCTCGTCCTCTACCAACTCTGAATACCCAGATCTCAATCCGTGCGATTATGATATGTGTGTGGAGCAGCAGCACACCTGCCAAGAGCTGAGAGATGCCACAGGCTGCCTCTGCCCGGGGCTGAGCAATATTTTCACTCGCCCGAGTCCACCGCGCCTCTCGTATCTAACTCAAAAGGGTAGCAAAGAGGTTCTGGTACACTGGTGTGCTCCCACTTCCTTTGTCACTCACTACATAGTCTGGGTGAGTGGGAAGTCCGTGAATAAGAATATACATgtggaggagagaaagagggacGCGGTAATGGAGGATGTTGAGGCTGGTGCTCGCATATGTGTACAGGCGGTAAATAAAGGCGGCGTCAGTGCAGATGACGATCAATCTTGTGACACATTTGAACCCCAAAATACAGACACCGGACTTGCGCTGAAGCTGGGCATTATTGGGGGTGTGGCGGGACTCATACTGCTGCTGATTCTGGCTCTGCTGCTTTGGAGACACAAATCACGGCAGAAATCCTCAGCGCGGACCAAGACTGAGGGAGTTTTGTaacgtctgtgtgtgtatgttggcAAAAAATGGACTTTTACTTAATCTGGGTATGAATGACGGGAGCAGGTGAATGACTGTGTACTGATCGCTTGCTGTGAGTGTGCTGGGTGGTGTTTGAATGACTCGGTGGACATGAACAGAAAGAGAAGGTGGAGGAATGACTCAGCACATTCTTCTCATTTGCTCGTCAGTGTCTACCAATGTGGTTTAGGACAGAGACAAATCGCATACTGCTGGTGTGCTGACTCCAATAATGAGCACCATTTCAAGCCCACTTCCTGATCAcgaacacattttaaacttctgtttcttcatcctgtatttgttttcaaagaaaaaggGCTGAATCACAGCGTTTAGGTTTAGGCCTGGATCAGATCAAATGGTTAGTACATATTTTAGGTCACTTTCGTAAGAAAGGAGTTTGCTAAGAGAATGTGTGTGAATCTtacaaaatgaaagatttttgtattttttggaaGTTTTGCTTtgtgatataataaaatatatattcccaTACAGTA

Function

GO: NA

KEGG:

id description
K24493 LRRN4; leucine-rich repeat neuronal protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238159.1 True 1394 mRNA 0.46 2 13792143 13796337
XM_043238160.1 False 1385 mRNA 0.46 2 13792149 13796337

Neighbor

gene id symbol gene type direction distance location
klhl13 klhl13,LOC107548461,LOC107693456,LOC107596129,LOC107710573,LOC107700252 coding upstream 15590 13733522 ~ 13776553 (+)
zgc:163098 zgc:163098,LOC107746377,LOC107700249,LOC107693453,LOC107710575,LOC108260249,LOC108411532 coding upstream 73592 13705427 ~ 13718551 (+)
si:dkey-17o15.2 LOC107746431,LOC107710568,LOC107596211,LOC107693437,LOC107700230,LOC107548464 coding upstream 87619 13700264 ~ 13704524 (+)
tagln2 -,LOC107710578,LOC107700246,LOC107746372,LOC107548469,LOC107596134,LOC107693452 coding upstream 153290 13633826 ~ 13638853 (+)
LOC122345172 si:dkeyp-110c7.4,LOC107746371,LOC107700245,LOC107596213,LOC107683146 coding upstream 165721 13623847 ~ 13626422 (+)
si:ch1073-224n8.1 si:ch1073-224n8.1,LOC107700253,LOC107665903,LOC107710566,LOC107596128,LOC107746433,LOC107548460,LOC107665901 coding downstream 3490 13799827 ~ 13804456 (+)
ltbp3 ltbp3,LOC107665902,LOC107710572,LOC107746379,LOC107700254 coding downstream 13376 13809713 ~ 13843783 (+)
LOC122346121 LOC107746380,LOC107734132,LOC107596124,LOC558044,LOC107663413 coding downstream 59086 13855423 ~ 13912604 (+)
cdc42ep2 LOC107548458,LOC107663424,LOC107746383,LOC107734144,LOC107661192 coding downstream 119998 13916335 ~ 13923913 (+)
dpf2 dpf2,LOC107596122,LOC107548457,LOC107734150,LOC107746382 coding downstream 130375 13926712 ~ 13937331 (+)
G36198 NA non-coding upstream 59687 13731969 ~ 13732456 (+)
G36191 NA non-coding upstream 70577 13720785 ~ 13721566 (+)
G36168 NA non-coding upstream 143605 13647926 ~ 13648538 (+)
G36141 NA non-coding upstream 211345 13566977 ~ 13580798 (+)
G36140 NA non-coding upstream 270535 13519973 ~ 13521608 (+)
G36332 NA non-coding downstream 178195 13974532 ~ 13974759 (+)
G36405 NA non-coding downstream 202763 13999100 ~ 14000337 (+)
G36406 NA non-coding downstream 204189 14000526 ~ 14003531 (+)
G36408 LOC107746439,LOC107663381,LOC107599230 non-coding downstream 209434 14005771 ~ 14007402 (+)
G36420 LOC107663407,LOC107599223,LOC107746393,LOC107661199 non-coding downstream 250440 14046777 ~ 14047494 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 984792 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 1086898 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 1263353 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1536471 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1849033 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 187760 13984097 ~ 13985706 (+)
G36495 NA other downstream 494083 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 503706 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 536686 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 551225 14347562 ~ 14349991 (+)

Expression


Co-expression Network