LOC122344640 (LOC107721539)


Basic Information

Item Value
gene id LOC122344640
gene name LOC107721539
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11701042 ~ 11703519 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238163.1
AAAGAACCATCACCACCAAATCCAGaACTGGATAAGCCGTGGAGAAAATTTGACTGGAGtAAGAAAGAAGCCCTAAAAGAAAAGCTGGAAAACTTTTCATTCTGTAACCCAGATGTAAAAGACATCAAGATCCTGGTAGTTGGACAAGTTGGAGCAGGAAAGTCCAGCTTTATTAACTCCCTCGATAGTGTCTTTCAAGGGCGAATGTCCTCTAGAGCGCTAGTTAGTGGATCTATTGATGCTAACAGTCATAGTTTCACTAAAAAGCTCACAGCATTCACTATCAAAAGTGGGAAGAAACATTTGCCCTTCACCTTCAAGGACGTCATGGGCTTAGAAAGTAAAATGTCTGATGGGTCGCTACCAGAAGACATCATCAATGCAGTATTTGGCTGTGTCAAGGATGGCTATAAGTTTGATGAGAAGGAGCCAATCACTAGTAAGGATCAGCATTATAACAGTGACCCTGAGCTCCACAACCAGTCTTTTTGCCTGGTTTACGTCATAGCTGCAGATACAATCCAGTTTGCAGATGATCGAGTCATTGACAAGCTGAGGATCATCCGCGAGAGAATCAGTAATAAGGGGATTCCTCAAGTGATTGTCATGACTAAAGTGGATGAAGCATGTCCACTTGTCAAAAACGATATAAGGAAGGTCTACACTAGCAAGAAGATCAAAGAGAAGATCGATTTGTGCCATATCAAAACTGGTGTGCCATTGACAAACATCTACCCAGTGAAGAACTACCATGATGAGATTGAAACAGAGGATGACATTGATGTTCTGCTACTAAAGGCACTTGAACAGATCGTTCAGTTTGCTGATGATAGATTGGATGATAGTGGAATgtattgaaaaaagtaaaatcaagaaaaaatgtgaataatgcAGTTACTCTGCAAGTTCAACAAgttctttttttcagcatgtATCTATTTAGCCTTACAGTGAGGGTATTAGCGTATCTGGAGAGATATGTACGACCAGAATAGCAGAATGTTTAATAACTTTATACcaac

Function

NR:

description
PREDICTED: interferon-induced protein 44-like, partial

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238163.1 True 1022 mRNA 0.40 7 11701042 11703519

Neighbor

gene id symbol gene type direction distance location
LOC122345658 NA coding upstream 1523 11689917 ~ 11699519 (+)
sptbn4a si:dkey-27p18.5,LOC107741189,LOC107733362,LOC107680392,LOC107672682,LOC107565414 coding upstream 20499 11656571 ~ 11680543 (+)
aifm1 LOC107597251,LOC107672651,LOC107733365,LOC107680381 coding upstream 66592 11623389 ~ 11634450 (+)
casp22 LOC107672910,LOC107597346,LOC107735460,LOC107734787 coding upstream 81974 11615592 ~ 11619068 (+)
nono LOC107741185,LOC107756548,LOC107680395,LOC107672625,LOC107565420,LOC107597250 coding upstream 86316 11609770 ~ 11614726 (+)
gpr83 si:dkey-27p18.2,LOC107746247,LOC107672928,LOC107741287,LOC107597348,LOC107663210,LOC107575892 coding downstream 14041 11717560 ~ 11724473 (+)
las1l LOC107672706,LOC107746236,LOC107663224,LOC107741192,LOC107557109 coding downstream 113833 11817352 ~ 11823611 (+)
zc4h2 zc4h2,LOC107663226,LOC107557113,LOC107597258,LOC107672730,LOC107746238 coding downstream 136957 11840476 ~ 11845269 (+)
mtmr8 LOC107672736,LOC107746239,LOC107597259,LOC107741196,LOC107557114,LOC107663233 coding downstream 148772 11852291 ~ 11860972 (+)
asb12a asb12a,LOC107746240,LOC107672747,LOC107557116,LOC107741197,LOC107663228 coding downstream 157525 11861044 ~ 11864442 (+)
G35350 NA non-coding upstream 169798 11530518 ~ 11531244 (+)
G35316 NA non-coding upstream 235703 11463869 ~ 11465339 (+)
G35322 NA non-coding upstream 258631 11441539 ~ 11442411 (+)
G35311 NA non-coding upstream 286354 11414041 ~ 11414688 (+)
G35309 NA non-coding upstream 295281 11405528 ~ 11405761 (+)
G35584 NA non-coding downstream 3140 11706659 ~ 11706998 (+)
G35585 NA non-coding downstream 4012 11707531 ~ 11707773 (+)
G35606 NA non-coding downstream 24757 11728276 ~ 11728601 (+)
G35629 NA non-coding downstream 70467 11773986 ~ 11775492 (+)
LOC122345698 NA non-coding downstream 239918 11943437 ~ 11986820 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other upstream 48359 11638516 ~ 11652683 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 397611 11266642 ~ 11303431 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 550817 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 636596 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 767289 10926823 ~ 10933753 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 220709 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 545619 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 810494 12514013 ~ 12528790 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 999833 12703352 ~ 12705245 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other downstream 1100270 12803789 ~ 12807351 (+)

Expression


Co-expression Network