apool (apool,LOC107672608,LOC107756555)


Basic Information

Item Value
gene id apool
gene name apool,LOC107672608,LOC107756555
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11514409 ~ 11518903 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238164.1
TTATTGTGAGAACCCCATCAGGAATATTCTCTCGCGTTGTGAGTGCTTTCTTGACTCCTCCTGCTTTCCGTAGTGAGACCAAAGGGGGCGGGACCGGCATGGCGGCCAAGATTCTGAAGTATGCAGCGCTTccagctgctgctgttgcagtGGGTTTGGGCTCATTCAGAATCTATTCCATAACTGAGAAAATAAACGAGGAACTAATATCTCCGAAAGAGTTGTCTATCTACTCCCCAGATCGCTCTGCTGTGCGGTTTGTGGAGGAACCGGCTGGTGTATTACAGACGGGGCTGGGGGCCGTGAGGGTGGGCCTGCAGCCATACGTCAGAGCAGTGCAGAACACCTTCGCTTCAGTCAAAGTTGGAGTGATATCTGTTTACCATGCAGGGCAAGACTCGTATCACTTTCTTCGAGATCCACCTCCTGGCTTCTTGCCTAGAGTGGGTGTCATCGGTGTGTCTGGATTGGGTGGCCTGATACTGGCACGCAAGGGCTCTCGTTTTAAGAGGATTTTCGTTCCTCTTGGTCTGGCTACCGCTGGTACTGCAGTATGTTACCCCACACAGACTGTTGGAGTCCTGAAGattACTGGTAAAAAGGTGTATACTGTCAGTTCATCTGTTGCTTCAATGTTTAAATCCAAACCGAAGGAAGATGTCATCATGCCTGTTGTTAGTGTGGAGtcgGCTGCCTCTGTAACAAGCTCAGGTATAGAATCACCTGCTAAAGCACTTTCTGAACTCCTGCCTGAGTCTGAGCCGGTCGCTGCTGTTCCAGATGAGGATGTCACACCAGTAACACAAGTCGTCCCATCAGTGGACTTAGCCCCAGCAGCAGACGTGTCAGGAGATGTTCTAGAACCTCCTCCTGCTGTTTATGTAGCATCTGGAATTGCTGCACCACTCTCTGAATCTGAAGCTCCCCCTGCACCTGCTTTAGAAACTACCCCCGAGTCTGTCCTAGATGCACAATCCAGCCCTGTTCCTGAGCCAGCACCTTCTGCCGAAATAGATATTATTCCTGTTAGGGAGTCTGATCCCGAAATTGTCTCAGAAGCTGCCCCTGCTGCTTCAGAACTTGATGTCCCTGCACCTACAGTTGTTATAATGGGGGAGGAGGCCACACCCTCAACTACACCTACTGTAGTGGAAGCCACACCCCCTGAAGATACCAACCCAACCACAGCAAATGAGGAACCTGCTTCTGTTGCCCCGGCCCCCGCTGAGGAAGCCATTCCTCTGATACCTCCCTCAGCTGAGGAAGCCCCGCTCTCACCTGAACCTCCTATAGATGAGCCAGTCACAGGGAAGCCACGTTTTGTTCCTGACCCTGCATTGCTCGACCATGGCCAGTCTAATCCAGAAGACGCAGACATGTACAGCACACGGAGCTGAAAGAGTGACAGAGAAACTGCGCAGAGAAAGATGGAGCATATGATATGTTTTAATGTGCCATGATTCCAACAGCATTTGATCACTTTGTGATTAGGATATTTGTTTTACCAGTGATGTGGAAGAAAGTAATGGTATGTTTCTTTCTGTGCTGCCTCACACATACAAGAATTTTCTTACCTCAGCAGGgatgtcaaacacacacacacacacacacacacaaagccacATTTCTGTGTTCAACACGTTATCAAAATTTGTTGATGCCATGGAGGAAAACGTAGGGTAACagcactttaataataaaaaaaaaagtctgtggTCCCTTAGTTTAATCTCCAGATTTATTTCTGCCCTCAATTTTGTGCTCATTTtatactgtgaaaaaaaaaaaaaagcttaaactg

Function

symbol description
apool Predicted to be involved in cristae formation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of MICOS complex. Orthologous to human APOOL (apolipoprotein O like).

NR:

description
PREDICTED: MICOS complex subunit MIC27-like isoform X1

GO: NA

KEGG:

id description
K24626 APOOL; MICOS complex subunit MIC27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238164.1 True 1801 mRNA 0.48 9 11514409 11518903

Neighbor

gene id symbol gene type direction distance location
si:ch211-26b3.4 si:ch211-26b3.4,LOC107597246,LOC107756552,LOC107565423,LOC107741180,LOC107680385,LOC107672834 coding upstream 2147 11473112 ~ 11512262 (+)
si:dkey-237j10.2 LOC107672540,LOC107756556,LOC107597242,LOC107748630,LOC107680403 coding upstream 43285 11467720 ~ 11471124 (+)
uprt uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 coding upstream 111126 11400449 ~ 11403283 (+)
iqcd LOC107733227,LOC107672405,LOC107597236 coding upstream 149469 11362066 ~ 11364940 (+)
plp1b LOC107597234,LOC107680389,LOC107672433,LOC107592271 coding upstream 184103 11324743 ~ 11330306 (+)
zgc:113208 zgc:113208,LOC107672636,LOC107597249,LOC106567768 coding downstream 85924 11604827 ~ 11609386 (+)
nono LOC107741185,LOC107756548,LOC107680395,LOC107672625,LOC107565420,LOC107597250 coding downstream 90867 11609770 ~ 11614726 (+)
casp22 LOC107672910,LOC107597346,LOC107735460,LOC107734787 coding downstream 96689 11615592 ~ 11619068 (+)
aifm1 LOC107597251,LOC107672651,LOC107733365,LOC107680381 coding downstream 104486 11623389 ~ 11634450 (+)
sptbn4a si:dkey-27p18.5,LOC107741189,LOC107733362,LOC107680392,LOC107672682,LOC107565414 coding downstream 137668 11656571 ~ 11680543 (+)
G35316 NA non-coding upstream 49070 11463869 ~ 11465339 (+)
G35322 NA non-coding upstream 71998 11441539 ~ 11442411 (+)
G35311 NA non-coding upstream 99721 11414041 ~ 11414688 (+)
G35309 NA non-coding upstream 108648 11405528 ~ 11405761 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding upstream 127239 11382670 ~ 11387170 (+)
G35350 NA non-coding downstream 11615 11530518 ~ 11531244 (+)
G35584 NA non-coding downstream 187756 11706659 ~ 11706998 (+)
G35585 NA non-coding downstream 188628 11707531 ~ 11707773 (+)
G35606 NA non-coding downstream 209373 11728276 ~ 11728601 (+)
G35629 NA non-coding downstream 255083 11773986 ~ 11775492 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 210978 11266642 ~ 11303431 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 364184 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 449963 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 580656 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 778350 10717531 ~ 10736059 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 119613 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 405325 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 730235 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 995110 12514013 ~ 12528790 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 1184449 12703352 ~ 12705245 (+)

Expression


Co-expression Network