LOC122344646


Basic Information

Item Value
gene id LOC122344646
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12173037 ~ 12177215 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238170.1
cctaccttccgttcctgttaattgtatcattgtcttcagctgtgtcttgttaatttaatcaattaccttgtgtatttattccctttagctgtttgtccgatctcgtctatATTATGTGTAATTTCGTTTATCTGCCTGTTTGCCTACCTGCCCGAGGTATTACTCCTTTATGTGTGCATGATTAAAATCATTAACTTTATATTCTCACTGAGTGCTCCTTCCCTCTAAACCACACCCTGATACTGCTGTGCTAAAAACCAGTTTTACCTGTtcatggaaaaaatgtttttacccaGGTGCCAgctgtcacgtctttggactctttttttgtttttgtcttgtgccatgtgctgtgtgccctgccttccgtTCCTGTTAGTTGTATCATTGTATCATcacttcagctgtttcttgttaatttagtcaattatgttgtatatttaagtcctgtgtgtttgagttcacgtttgtccgatcgtcgaggtttattcgtggtttatgttctgcctgcctacctgtatgttattattttgtccgtttgaagaaGATTAAAaccgtttttttaaatggtgtcatattttaaaacagcactAGCATGTATTATCATAACTCAACTCATATATGGTTTACAAATAGTTGAGCATGCTATAGATATGTGAGGAACAGGAAAGGTACAGAAATCTCAATTGCAACCATCCATAAGTGAAAGCAACTTGTTTTGGCTTGCATAAGTATTTTTAGTGTTGCTAATCCAGTGGTTTGTGTGAGACTGAATCGTTCTTCTCTCTCACTGgatgtgttttgtttcagttttaaagAAGCATGGCAGCGAGAAGTGGCAATGACTTTGAGCTTGTTATTCCCGAAAGAGGTGAAAGAGTTAAGATTACTTCAGGATCTGCTCTCATCGTGTCGTGTCACTTGTCTCCTGCAGTCAGTGCCGTTGATATGGAGATTACTTGGCTTGGCCGGATGTCTTGTATTTGTGCCTATAAGAACCGAGAGATGACACAGGGAGCTGACTATGAGGGCAGAGCGAGTCTGTTTATGTATGACCTGAAGAAAGGGAATGTGTCCTTAAGACTGGCGGACTTCAGAGAGACCGATCTGGGGGTCTACATGTGCCGGGTATccagcagaaacaaaacacggcagataataataaatgtagcaGAAGAAGTCTCTGCCATTTCTAAGGAAAAGCGTGTTACAGTGGATTacaaggaaaaaagaaatgAATTACCACTACAGGAAATGTCATCAAATCcaaactataaagataacaagCTACCTGGGGATAACAGCCTTGAAAGGAAACCCAAAATTTCATATGATAGGAAACCAAACAAAAGCCAGCAAAGGGagAACTTTCAGCTTGTTGTTCCCAGTACATCAGAAGAACCAGAGGTTTCTTTGGGGTCTGATTTGATCGTTCCTTGTTTCCTGTCTCCTGAGATCAGTGCACTTGACCTTGAGATAAGCTGGTCTACCGATAcagcctgtgtttgtgtgtataaggACAAGCAGGTGATAGAAGGGGTTTTGTTCAAGGACAGAGCGAGTCTGTTCACTCACAAGCTTAGGGAAGGAAATGTGTCCTTACGACTGAAAAACTTCAGGCCATCAGATATAGGAAATTACCATTGTCAGGTCAGCGGCAAAGACCGAAGAGAGAGGATAACAGTAAGAGGTCATAAGGCCAGATATAAAGAACACAACTTCGCAAAAGATAATGGGTAG

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238170.1 True 1740 mRNA 0.41 9 12173037 12177215

Neighbor

gene id symbol gene type direction distance location
LOC122345274 NA coding downstream 35 12169594 ~ 12173002 (-)
gab3 LOC107746243,LOC107597263,LOC107672781,LOC107663235,LOC107741201 coding downstream 250028 11902322 ~ 11923009 (-)
shisa2a shisa2,LOC107746248,LOC107672960,LOC107597350,LOC107741289,LOC107557100 coding downstream 324082 11847127 ~ 11848955 (-)
zc3h12b LOC107741193,LOC107746237,LOC107672716,LOC107597257,LOC107663225 coding downstream 332995 11825267 ~ 11840042 (-)
fdx1b LOC107672951,LOC107746235,LOC107597349,LOC107741288,LOC107663211 coding downstream 386894 11777612 ~ 11786143 (-)
LOC122345275 LOC107597264,LOC107672815,LOC107742671 coding upstream 13487 12190702 ~ 12196377 (-)
LOC122344659 NA coding upstream 95002 12272217 ~ 12273638 (-)
LOC122345273 NA coding upstream 179621 12356836 ~ 12363715 (-)
arhgap25 LOC107741203,LOC107557123,LOC107663229,LOC107654642,LOC107743332,LOC107597266 coding upstream 204149 12381364 ~ 12394042 (-)
cds2 cds2,LOC107597267,LOC107654641,LOC107741205,LOC107663217 coding upstream 219067 12396282 ~ 12409668 (-)
G35690 LOC107597260,LOC107746241,LOC107672756,LOC107741198,LOC107663227,LOC107557115 non-coding downstream 301984 11866762 ~ 11871053 (-)
G35660 NA non-coding downstream 396924 11775805 ~ 11776113 (-)
LOC122344709 NA non-coding downstream 398425 11769860 ~ 11774612 (-)
G35601 NA non-coding downstream 469329 11701233 ~ 11703708 (-)
G35599 NA non-coding downstream 473371 11697948 ~ 11699666 (-)
LOC122345280 NA non-coding upstream 1836 12179051 ~ 12179750 (-)
G35797 NA non-coding upstream 4272 12181487 ~ 12182979 (-)
G35805 NA non-coding upstream 49703 12226918 ~ 12248708 (-)
G35804 NA non-coding upstream 51367 12228582 ~ 12247509 (-)
G35812 arhgap25,LOC107597266,LOC107743332,LOC107654642 non-coding upstream 78265 12255480 ~ 12256812 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 3627 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 357093 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 520410 11583780 ~ 11652627 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other downstream 705915 11419955 ~ 11467122 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 1203919 10960311 ~ 10969118 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 140588 12317803 ~ 12319685 (-)
G35936 NA other upstream 324699 12501914 ~ 12505958 (-)
G36047 NA other upstream 876629 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 1401846 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 1477079 13654294 ~ 13699226 (-)

Expression


Co-expression Network