ccdc15 (ccdc15,LOC107691749,LOC107712940,LOC107556428,LOC107744316)


Basic Information

Item Value
gene id ccdc15
gene name ccdc15,LOC107691749,LOC107712940,LOC107556428,LOC107744316
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23098840 ~ 23104975 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238177.1
AATGTTGTGCGACTCTGTTAGCGTCTTGACAACGGATCTTTAATCCTGACGGTTACAGCTATGAAAATATTTACGCTATTTGTATGAGGACAGTAACGGCGTTATGATCCGatgtactgttttgtttttgctcgaATAATCGGTGCCTTGCTAGGTATTAAGGTCTGAATATCAGTGACTCACAAAATGCCATAAAGGGTAGTTATACGTTAAGTTAGCCATCCATAACTGAAAGGTTTGACGCGAAATGAATCGAGCAAAAACTACCAAAGAAAGGGTTTGCTCTTCGATAACACAAAAGAAGgtcttaaaagaaaacaaaaggatCATCTTTGGAAGCAGGAGAAAGGCCAGAGATGTAAGAGTGTTGGCAGAGAGGAACCCGGCTGTGGCTCCTGTGGGTGTTTGGGTGGAGAGCGGCGATGAGAGTCAGGAGCATCCCGCGGTCCGTGCTCTGCTCACAGAAGAGCTTCTGGAGGAGACCAGacgagagaaagaggagagtcTGCGCCGATTTCGGGATGCAGTTCGTGAACGTGTGTCGCAGCAGGCTCGTCTGGCCAAACAACGGCAGCTGCTGAAATCATACCAGACCGTTGAATGCGACAGCAAAGTACTGCAACAAACCAGCAGAGCGGCCTATCGTCTTACACCCCAAACCAATTTATTCCCTTCCTGGACACACGGGGAGCGAGCAGTCTGCAGTCCCGGCTCTCGCTGTGTCAGCGCTCTGGAGACGCAGGCTGTTTCTTCACATCACCATACGCATAATGTCAGTAAAGTCAGGAAGCAGGTGAGACACAGACTGGCTGCTCGTCAGACAGCGCAAGAGGGAGATGAACTACCTGGAGGGAGATGGAAAAGATCCACAGCCAGAGAAAAAGCCGAATCACACGCTTGGAAAGATCAGAAGGATTATACTGAAAGTGCAAATGATGGAGGAGAGGAAAACGAGCAGGAAGTTGAAGCGGAAGACGAGATGCTGTTGGGGCAGCATGATCAACCTCTTCATCTGCATCGCCGCAGAAGCAAGACTGTAACTTTTCAGGATGATATGGTGTGTGAGCCAGATCCCACAACCGACTACAGAGCTTCCCAAGTTCTCTGGCCTCATGAGAATCAGGAAGAGCTGAAGAGGCAGAGACAGTCTCAGTTCCTCATGTATCGACGCCACTTCATGGACATTGAGAGAGAGCAGGCGAAGGAACACCAAAGGCACAGGAAACATCTGAAGAGAACTGCAAGGATCAAGAATGAAAAAGAACAACTTAGGAAATCTGAGGAAAAGAAGATGGAGAGGCAGCGACAGcaagaggaagaaagaaaagacatgGCTGAGAGGGAGTATTTGATTTTGGAGCGATTGAGGcttgatgaggaggaggaggaggcagcGGAGAAGGTAGAGAGACGAGAGAAAACAAAGAGGAACAAAGAAAGCAAACGGTACATTGAGGCCATGCAGGCTCAAATGAAAGAGAAGCTGGAGAAGGATAAAGTAGAGCTGCCTCCTCTGTGCTGCTGTGGAGACACTTTCTGGGACAGTCATCCAGAAACCTGCGCCAACAACTGCATCTTCTACAACAATCCGAAAGcgtATGCTCAGGCTCTGCAGTCTGTTTTGCTAAGCTGTGATCTGAAGGAAGGAGGCTTTGGACAGCATTCATCTACCAGAAGACATCCTCTATAGATGTCCATTTTCAAAGGAAGTGATTGTATCTTTATAGTAATTGTTGAACATGTTTTAAGACTGGACAGCCTGAAGGGTTACGTTGCATTAATGCAATGATTTCATGGTtcgatattttttttactgttctcCTAGGTGGTTTAAAACACCTGACATACCTCTTgtaattacagcatttttattgtctttaataAACCTTTTTGAATTGAGAAAA
>XM_043238178.1
AATGTTGTGCGACTCTGTTAGCGTCTTGACAACGGATCTTTAATCCTGACGGTTACAGCTATGAAAATATTTACGCTATTTGTATGAGGACAGTAACGGCGTTATGATCCGatgtactgttttgtttttgctcgaATAATCGGTGCCTTGCTAGGTATTAAGGTCTGAATATCAGTGACTCACAAAATGCCATAAAGGGTAGTTATACGTTAAGTTAGCCATCCATAACTGAAAGGTTTGACGCGAAATGAATCGAGCAAAAACTACCAAAGAAAGGGTTTGCTCTTCGATAACACAAAAGAAGgtcttaaaagaaaacaaaaggatCATCTTTGGAAGCAGGAGAAAGGCCAGAGATGTAAGAGTGTTGGCAGAGAGGAACCCGGCTGTGGCTCCTGTGGGTGTTTGGGTGGAGAGCGGCGATGAGAGTCAGGAGCATCCCGCGGTCCGTGCTCTGCTCACAGAAGAGCTTCTGGAGGAGACCAGacgagagaaagaggagagtcTGCGCCGATTTCGGGATGCAGTTCGTGAACGTGTGTCGCAGCAGGCTCGTCTGGCCAAACAACGGCAGCTGCTGAAATCATACCAGACCGTTGAATGCGACAGCAAAGTACTGCAACAAACCAGCAGAGCGGCCTATCGTCTTACACCCCAAACCAATTTATTCCCTTCCTGGACACACGGGGAGCGAGCAGTCTGCAGTCCCGGCTCTCGCTGTGTCAGCGCTCTGGAGACGCAGGCTGTTTCTTCACATCACCATACGCATAATGTCAGTAAAGTCAGGAAGCAGGTGAGACACAGACTGGCTGCTCGTCAGACAGCGCAAGAGGGAGATGAACTACCTGGAGGGAGATGGAAAAGATCCACAGCCAGAGAAAAAGCCGAATCACACGCTTGGAAAGATCAGAAGGATTATACTGAAAGTGCAAATGATGGAGGAGAGGAAAACGAGCAGGAAGTTGAAGCGGAAGACGAGATGCTGTTGGGGCAGCATGATCAACCTCTTCATCTGCATCGCCGCAGAAGCAAGACTGTAACTTTTCAGGATGATATGGTGTGTGAGCCAGATCCCACAACCGACTACAGAGCTTCCCAAGTTCTCTGGCCTCATGAGAATCAGGAAGAGCTGAAGAGGCAGAGACAGTCTCAGTTCCTCATGTATCGACGCCACTTCATGGACATTGAGAGAGAGCAGGCGAAGGAACACCAAAGGCACAGGAAACATCTGAAGAGAACTGCAAGGATCAAGAATGAAAAAGAACAACTTAGGAAATCTGAGGAAAAGAAGATGGAGAGGCAGCGACAGcaagaggaagaaagaaaagacatgGCTGAGAGGGAGTATTTGATTTTGGAGCGATTGAGGcttgatgaggaggaggaggaggcagcGGAGAAGGTAGAGAGACGAGAGAAAACAAAGAGGAACAAAGAAAGCAAACGTTGCGTGATGGTCGTGTGACAGGTACATTGAGGCCATGCAGGCTCAAATGAAAGAGAAGCTGGAGAAGGATAAAGTAGAGCTGCCTCCTCTGTGCTGCTGTGGAGACACTTTCTGGGACAGTCATCCAGAAACCTGCG

Function

symbol description
ccdc15 Predicted to be active in centrosome. Orthologous to human CCDC15 (coiled-coil domain containing 15).

NR:

description
coiled-coil domain-containing protein 15

GO: NA

KEGG:

id description
K16752 CCDC15; coiled-coil domain-containing protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238177.1 True 1904 mRNA 0.46 10 23098840 23104975
XM_043238178.1 False 1584 mRNA 0.49 9 23100129 23104975

Neighbor

gene id symbol gene type direction distance location
slc37a2 slc37a2,LOC107691751 coding downstream 1581 23086295 ~ 23097259 (-)
pde9ab LOC107664292,LOC107556423,LOC107600796,LOC107712935,LOC108427349,LOC108259736,LOC571737 coding downstream 13915 23078556 ~ 23084925 (-)
oafb LOC107691805,LOC107744339,LOC107556424,LOC107664291 coding downstream 22446 23070110 ~ 23076394 (-)
pou2f3 pou2f3,LOC107600771,LOC107712933,LOC107691752,LOC107556425,LOC107744320,LOC107664296 coding downstream 32268 23057205 ~ 23066572 (-)
zgc:194948 NA coding downstream 42415 23054946 ~ 23056425 (-)
hepacamb LOC107712936,LOC107556427,LOC107744315,LOC107691804,LOC107664307,LOC107600797 coding upstream 954 23105929 ~ 23119144 (-)
LOC122345314 fer,LOC107709787,LOC107691727,LOC107721649,LOC107663784,LOC107564044,LOC107603170 coding upstream 289189 23394164 ~ 23411152 (-)
btg4 btg4,LOC107745130,LOC107691802,LOC107600778,LOC107709986 coding upstream 341722 23446697 ~ 23448138 (-)
ppp2r1ba ppp2r1a,LOC107663771,LOC107691746,LOC107745127,LOC107603174,LOC108428700,LOC103032850 coding upstream 390163 23495138 ~ 23505743 (-)
alg9 alg9,LOC107691744,LOC107745128 coding upstream 405203 23510178 ~ 23518148 (-)
G38747 NA non-coding downstream 61370 23036457 ~ 23037470 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding downstream 222403 22873971 ~ 22876437 (-)
G38634 NA non-coding downstream 305787 22791690 ~ 22793053 (-)
LOC122344815 NA non-coding downstream 1057573 22038360 ~ 22041267 (-)
G38767 NA non-coding upstream 240614 23345589 ~ 23345797 (-)
G38769 NA non-coding upstream 252599 23357574 ~ 23358147 (-)
G38892 NA non-coding upstream 561866 23666841 ~ 23669869 (-)
G38982 NA non-coding upstream 797644 23902619 ~ 23902898 (-)
G39034 NA non-coding upstream 872201 23977176 ~ 23978527 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 1214818 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 1272735 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 1479257 21612688 ~ 21619583 (-)
G38359 NA other downstream 1729792 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 2162743 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 22237 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 497261 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 646905 23751880 ~ 23756588 (-)
G38973 NA other upstream 782328 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 874689 23979664 ~ 23997739 (-)

Expression


Co-expression Network