CI01000004_15200553_15209521 (SLC1A8B)


Basic Information

Item Value
gene id CI01000004_15200553_15209521
gene name SLC1A8B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15198242 ~ 15209824 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15200553_15209521.mRNA
ATATAAAAACCATGTTTCTTACAGGCTCTTTCAGAACCAAAACTCCTTCATTTCCTAGACTGAAGTCCCTCCAATGCTGTCAGGTAATTAAATCAATACCTGCTGTACACGCTGGTGTCGGAAATGCCTGTAAAGTGCACCAGCAGAAATCCCATTAAGGCATGACGTTCACACTAATAAGGGGCATGTCCTTCATCTCCGAATAGCCTCCACCCCATGTGTACTTAGTAAAAGCAGTGCAGCCAAATGAAAGAACATCCTTTTTCCATGTGAGCTAGGAGTGCTGTAAGAAAAGGATAACTTGATATATTGTTTATTTGTTTATTCAGTATCCTGTATTCTGAGGAGGTGCAATTTTTTTTTTCTTAAATCAAGCCCACTCAGACCATCACTATTCTTTAGAATATGACATGTGGAGCAAATGGGTCTATTAAACTTCTCTTCTTAACTTCACTTCTCTATTAAACTTAGACCTCATGCAATAATACACTTTTAATGATTCTTTAGTCTATATAGATAGACCTGGGTGTTACATACTACTAATTTTGTAACCTTTTAAAAATTGTTTTTGGAACAGGATTACATAAAACTACACTTTAAAAAATACTGGGTTAAAAACCCAAGTTGGGTTAAATATGGACAAACCCAGTGATTGGGTTGTTTTGACTCAACGGTTGGGTAAAATGTTTTAACCCAACTATAAGGTTTATTTAACCTAACTATTGTTTAAAAATGACTATGGCTGGCTTAAAATGAACCCAAAATAGGTTGGAAATTAAAAATCAGACACATGATTACTAGAGGCAACAATAATAATCAAAAGGTGAACAATTATTAATAAGCAATTTTTTGCAATTGTTTAATTATTAATCATTAAACATTAATAAATGTTAATTTATTAAACATATTAATAAATGTTAATTTCCAACATATTTTGGGTTCATTTTAAGCGAGCAATAGAGTTTTCTTTAAACAATAAAACTACTCAGCAGGTTGGGCAAACATTTAACCCAACCGCTGGGTTTGTCCATTTTTAACCCAACTTGGGTTGTTTTTAACCCAGCATTTTTTAGTCTATGTTTTGTTTACGCTTAACCCTAATGTTGTGTTTCAGGATTTTCTTCCCGAAAATGCTAGTTAATATCGCATTGGATTAAAACTTACTTGCTTTGCTCACACAAGGTATAACATAATATTTTTTTGGCTTTTCTGTGTTCCACTTGTGGCGTTCCTGGTCAACAAAGAAACCAGACTTCAAAGAAAAAATCTCTTGTTATGCTGTTATTGCCGAATATTTGATATTGAAATATTTAATATTCAAGACTCTAAAAAATGCTGGGTTAAAAACAACTCAAGTTGGGTTGAAAATGGACAAACCCAGCAGGTTGGGCAAACATTTAACCGAACTGCTGGGTTAAAACAACCTAATCGCTGGGTTTGTCCATTTTCAACACAGCATTTTTTAGAGTGAAATATTAAATCTTTTATCAGCTTGTTTTCTTTCAGTTAGGACAGGTTTTATGTCTTTTTGGAACTTTTTGATCATAGGCCTCATTGATCTGAGCTTATGTACCTCATTTTTTGAGGTGAATTAGCTTGAGTTAACTTTTTTGTCACTCAAACACTGAGGTGCATAAGGTCAGAACAATTTGATCAATCCGATCCAAAAAGAAATACAAAACCTGTGCTGAAAGACAGCAAGCTGACAAAAAAGCAAAATGAGAGATTTACAAAATATTTAGAAGGCTGGTTATTTTTGACAGAGAAAACCAAAGTAGGTAAAGGATTTTCAACACAGCACAAGGGTTAATATCTTTTTTAACTCAAAAGGTATGGTTAGTGGTTCCAGATGTGCAGCTGCTCATGTGGGTTTGAGCCTGTGTCAGATTCGTCATTCTCCCCAAGATTGCCATGTCATACTTTCATTGCGTTTCCAAAAAATAATTCTAAAAATGTAACCTTTTTTGAAGTAAATCTTCACTTTTTAACCTCAAAATGTGTTGACCCCCACTGACCTTGGCCTCTTATTCTAGGATTAGTGCTTCATCACTTATCTTTCCACAGTCAATGGCCTCCAGACTCTTGACTAGGTTCTTTTAATACCCTTGTAATCGCCTCTGACTGTGCTGTCGTGAAGGCAGTGGTTTGGATCTATACTTGATTGCTTAATCTGTTGTTAGAAAAGGTTTACACCGAAAAGGCTCTCGCAACACTTCCTGCCCACACAGGTCTAAGCATGGATGAGAACCGGAGTAGCTCAAGGCCGGCATCTTCCCAGTGCCATTCCCCTCCCGTGGGTCCCTGGAGAAACATGGTGGAATATTTCAAGAAACTTATCAAGAACTCAGTATCAACAAAGTTTCGGGCATGGGTAAAGGACTACTGCAAAAGGAACGGCTTGCTCACCTTATCAGTGTTAGCAGTAATGTCAGGCTGTGTGGTGGGATTCGGGTTGAGAAGTTTGAACTTGTCAACACAGGCAAAAATCTACTTCTCTTTTCCTGGAGAGCTTCTAATGAGAATGCTGAAAATGTTGATTCTTCCTCTCATCACATCCAGTTTAATGTCTGGCTTGTCTGCTATGGACACCAAAGCCAGTGGACGCCTGGGCCTTCTCACCATCACATATTACCTGTGGACTACCTTCATTGCTGTAATTGTGGGGATTATTCTGGTGCTGATCATTCATCCCGGAACTGGTACTGAGAAAGAGGGACATAAAGCTGCAGGAGGGCCAGTGATGACGTCTGCCGATGCCCTGCTTGATTTGATCAGGAACATGATTCCATCCAATCTGATTGAAGCCACATTTCAGCAGTATAAGACAGAACTTGTTCAAAATTTAAAAAACAGTGCAAAATCATCACAAGCCAACTTTGTGTACATCATGCCAGACTATGAAAACCCCAAGATGGGTCACCCAGTGTTTCTGGAACTCACTCCTCCTCCTGAAATCCACTATAAGATTGTACCAGGGAAAAGCAATGGGATGAATGTGCTAGGAATCGTCATTTTCTCTGCCACTATGGGTCTTCTGCTTGGTAGAATGGGATCCAGAGGTACACCTCTGGTGAATGTGTGTCTTTGTATCAATGAATGTGTAATGAAGATCATCAATGCTGCTATGTGGTACTTCCCATTTGGAATCGTATTTCTGGTTGCTGGGAAAATCCTGGACATGCATGATCCTGCAGTCCTTGCGGAGAAGCTGGGAATGTACTTCATCACTGTCCTGGCGGGGCTGTTCGTGCATGGGGTGATTTTGCTGCCGATGTTCTTCTTCGTGTTTACCAGGAAAAACCCCTTTAGCTATATCCGTGGCCTCCTCCAGGCTCTGGTTATCGCATTGGCAACTTCATCCAGTTCAGCTACTCTGCCCATTACAATGAAGTGCTTACTGGAAAACTGCCATGTGGATCGGAAAATCGCTCGGTTTGTACTTCCTGTGGGCGCTACTATCAATATGGATGGCACAGCACTGTATGAGGCAGTGGCAGCCATCTTCATTGCACAAGTCAATGAGTACGAGCTTGACTTTGGACAACTTGTTACTATTAGTATCACAGCTACGGCAGCAAGCATCGGAGCAGCTGGAATCCCTCAGGCTGGTCTTGTTACCATGGTTATCGTCCTTACCTCCGTGGGTTTGCCTCCAGATGACATTTCACTCATTGTAGCTATTGACTGGATCCTGGACCGATTTCGAACAATGATCAACGTGCTTGGAGACGCTTTAGCCGCAGGAATCATGGCTCACGTGTGCAGAAAGGACTTTCAGAAAGACATCCCATCCACAACCAACACAGAGAGAAGAGATACTGTGATATCTTTTGGAAACCAAAGCGTGCAAAGTTTTCCCACATCTGAAGTTCCACTACTGGCTAACAGGGACTACATCTTAGAGGTTGTCGGCGATCAGGTGATCGAGAGGCCGACAACCTGTTACAACCTCTGCCAAGTCTAGCTTTGACGGACGATACCAAGCAGGAACAGAAGCTGCCTTGACTTCACAAAAACCTTCCCCCTTTTCCTCCCCTTTGTTGTACATTTGTGCCATTGTCTTTTTACATCACAGATGTTACTGTTACCTCAACAGTCGCCTTTGGTGAACTTGAAAAATGAGGACATTTGAGTGCTTTTGACACCTTAACTTGGGGGTTTTGTAAATTACAAAAACATGCGTGTTTGTTTTTTTTAATGTTTATCTTTTAGAATTGCCTTAAAATGCAATAGTTAATGACAGTACAACTAAAACTAGACCACAATA

Function

symbol description
slc1a8b Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cerebellum; optic tectum; and telencephalon.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05618 SLC1A7, EAAT5; solute carrier family 1 (glutamate transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15200553_15209521.mRNA True 4267 mRNA 0.40 11 15198242 15209824

Neighbor

gene id symbol gene type direction distance location
CI01000004_15126731_15131774 NA coding upstream 66004 15126684 ~ 15132238 (+)
CI01000004_15110181_15110483 NA coding upstream 87617 15109598 ~ 15110625 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB coding upstream 101069 15091200 ~ 15097173 (+)
CI01000004_15056504_15062261 RABGAP1L2 coding upstream 135062 15055922 ~ 15063180 (+)
CI01000004_15048166_15051524 NA coding upstream 145425 15048166 ~ 15052817 (+)
CI01000004_15229290_15233374 PEX19 coding downstream 18952 15228776 ~ 15234597 (+)
CI01000004_15237719_15253901 COPA coding downstream 27895 15237719 ~ 15254158 (+)
CI01000004_15260416_15262090 APODA.2 coding downstream 50415 15260239 ~ 15262240 (+)
CI01000004_15277204_15286845 SAMD7 coding downstream 67380 15277204 ~ 15286987 (+)
CI01000004_15291659_15296777 NA coding downstream 81835 15291659 ~ 15297847 (+)
G34032 NA non-coding upstream 38182 15106736 ~ 15160060 (+)
G34031 NA non-coding upstream 91543 15106422 ~ 15106699 (+)
G34028 NA non-coding upstream 94074 15103966 ~ 15104168 (+)
G34027 NA non-coding upstream 94665 15103350 ~ 15103577 (+)
G34017 NA non-coding upstream 103867 15094105 ~ 15094375 (+)
G33896 NA non-coding downstream 13837 15223661 ~ 15223914 (+)
G34055 NA non-coding downstream 26306 15236130 ~ 15236383 (+)
G34061 NA non-coding downstream 61820 15271644 ~ 15271905 (+)
G33857 NA non-coding downstream 209437 15419261 ~ 15425806 (+)
G34090 NA non-coding downstream 223344 15433168 ~ 15433373 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1161342 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2542531 12646838 ~ 12652570 (+)
G31865 NA other upstream 3003095 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3530583 11666900 ~ 11667659 (+)
G34220 NA other downstream 729533 15939357 ~ 15939950 (+)
G33815 NA other downstream 853591 16063415 ~ 16066464 (+)
G34400 NA other downstream 1767504 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015718 slc1a8b coding NC_007113.7 CM002886.2 37110504 ~ 37122351 (+)