top3b (top3b,LOC107705001)


Basic Information

Item Value
gene id top3b
gene name top3b,LOC107705001
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1733099 ~ 1745696 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238199.1
CCGGAAGTTAACATGTCTAAAGAAGCGGCTGCACCACACACCGGTCCTGTTGATGTTTGTGATAGATAAGTAAAAGCAGCAGCGATGAGGACTGTGTTTATGGTGGCTGAGAAGCCCTCTCTGGCTCAGTCCATTGCCAAAATCCTTTCTAAAGGCAGCTGTTCAACGCGGAAAGGTCTGAATGGAGCGTGTTCAGTCCATGAGTACACAGGAAGCTTCATGGGACAAAATGTGAGGTTCAAGATGACGTCGGTATGTGGACATGTCATGAGTTTGGACTTCATAGGAAAGTATAACAACTGGGATAAAGTTGATCCAGCTGAGTTGTTCAGTAAAGCTCCGACTGAGAAGAAAGAAGCAAACCCCAAACTAAATATGGTCAAATTCCTTCAGGTTGAAGCAAAAGGTATCGACTATGTTGTCCTGTGGTTGGATTGTGATAAAGAAGGAGAGAACATATGTTTTGAGGTGTTGGATGCCATTCAGCCGGTGATGAATAAGTCTTACGGTAATGATCGTACTGTGTATCGcgcaaagttcagctccatcACAGACACGGATATCTGTAACGCCATGAACCGACTCGGAGAACCCAACAGGAACGAGGCTCTGTCAGTAGATGCTCGTCAGGAACTGGATCTCAGGATCGGCTGTGCTTTCACACGTTTCCAGACTAAATACTTCCAGGGGAAATATGGGAATTTGGACTCCTCCTTGATCTCGTTCGGTCCCTGTCAGACTCCCACACTGGGATTCTGTGTGGAACGGCACGACAAGATCCAGTCCTTCAAAGCTGAAGCATACTGGGTTATACAGGCAAAGGTTTTTAAAGGCAAGGACAGTCCGCTCACCTTGGACTGGGACCGCGTGCGAGTGTTTGACCGAGATGTTGGTCAAATGTTTGTTAACATGGCAAAGACTGCTAAGGAGGCTAAAGTTGACTCGGTCTCTAAGAAAGAGAAAGCCAAGCAGAGACCCCTCGCGTTGAATACAGTGGAGATGTTAAGAGTGGCCAGCTCTGCTTTGGGAATGGGTCCCCAGCACACTATGCAGATAGCAGAGCGTCTTTACACACAGGGTTATATCAGCTACCCTCGCACAGAGACCACACATTACCCTGAAAACTTTGACCTCAAGGGCACCCTCAAACAGCAGGCCAACAGCTCCTTCTGGGGTGAAACGGTAAAAGCCCTGCTCTCTGAGGGCATTAACAGGCCAAGAAAGGGAGTGGATGCAGGAGACCACCCGCCAATCACACCCATGAGAGCCGCCTCTGAGAGCGAGCTGGGCAGCGATGGTTGGCGTTTGTATGATTACATCACACGGCACTTCATCGCCACCGTCAGCCCCGACTGCAAATACCTACAGACCACCATTTCCTTCAGCATCGCCACAGAGAGCTTCACGTGCAGCGGGAAGACTCTCATCTCTACCGGTTACACCGAGGTGATGCCCTGGCAGGGTATTGCACAGGAAGAGGCCTTGCcggtgtgtgagagaggagacACGTTTACAGTGGATGAGATCAAACTACTGGAGAAACAGACCAATCCCCCAGACTACCTGACTGAGGCCGAGCTCATCACACTCATGGAGAAACACGGCATCGGTACGGACGCCAGCATCCCTGTCCACATTAACAACATCTGCCAGAGGAACTACGTGACCGTTGAAAGTGGCCGCAGGCTCAAACCCACAAACCTGGGGATCGTTCTGGTTCACGGTTACTATAAAATTGATGCAGATTTGGTGCTGCCTACGATCCGCAGTGCTGTGGAAAAGCAGCTAAACCTGATAGCTTTGGGAAAGGCAAACTTCCAGCAGGTCTTGCAGCACACTCTGGACATCTTCAAGAGGAAGTTTCACTACTTTGTGGACTCCATTGCAGGCATGGATGAGCTGATGGAAGTGTCCTTTTCCCCCATCGCTGCTACTGGGAAACCTCTCTCACGCTGTGGCAAATGCCATCGCTTCATGAAGTACATCCAGGCCAAACCCAGTCGCCTGCACTGCTCTCATTGTGACGAGACCTACAGTTTGCCTCAGAATGGAGCCATTAAACTGTACAAGGAGCTCAAGTGTCCTCTGGATGAGTTTGAGCTGGTGCTGTGGACCTCGGGGTCTCGTGGCAAAAGCTACCCTGTGTGTCCATACTGCTTCAGCAACCCTCCCTTCAGAGACATGAAGAAAGGGATGGGCTGTAATGAGTGCACCCACCCTTCCTGTCAGCACTCTCTCAACTCTCTCGGCATCGGTCAGTGTGTTGAATGTGAGACAGGCGTCCTGGTTTTCGATCCCACCTCGGGTCCAAAGTGGCGCATGGCTTGCAACAAATGCAACGTGGTGGTGCATTTCTTCGAGCACGCTCATAAAGTGCAGGTGTCCCAGGAAAGCTGTGATTCCTGCGAAGCCTCGCTGGTCATAGTGGACTTCAACAAGACACGCTCGCCGCTGCCTGACGGGGAAACGCAGCACACcggctgtgtgttttgtgacgCCGCGTTCCAGGATCTGGTGGAGCTGAAACACGCGACCATGCGCCATCCCATGCATCGGGCCGGAGGAGCCCGGAGAGGGAGAGGGAAGGGGAGAGGCAGGAGGCCTGTGGGGAGAGGGAATCCTAAAAAACCTAAAGACAAAATGGCAGCCCTGGCAGCATACTTTGTATAGATTGTTCATTTTTCTTGCAGCAGAGAATTAAAGACAGCAGAAAAAGGCTTCGAATTCAAGCTGAAAAGATGGCAATAAACTTTTAGTTTAATAGA

Function

symbol description
top3b Predicted to enable DNA topoisomerase activity. Predicted to be involved in DNA topological change. Predicted to be active in nucleus. Orthologous to human TOP3B (DNA topoisomerase III beta).

NR:

description
DNA topoisomerase 3-beta-1

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03165 TOP3; DNA topoisomerase III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238199.1 True 2765 mRNA 0.51 18 1733099 1745696

Neighbor

gene id symbol gene type direction distance location
ppm1f ppm1f,LOC107599133,LOC107741489,LOC107755823,LOC107668739,LOC107704983 coding downstream 962 1721233 ~ 1732137 (-)
mapk1 mapk1,LOC107741490,LOC107704570,LOC107599610,LOC107386038 coding downstream 15198 1696432 ~ 1717901 (-)
p2rx2 p2rx2,LOC107704555,LOC108431687 coding downstream 130039 1597847 ~ 1603060 (-)
lztr1 lztr1,LOC107716547,LOC107704547,LOC107755835,LOC107668721 coding downstream 153471 1572148 ~ 1579628 (-)
cldn26 LOC107716548,LOC107653273,LOC107755822,LOC107599648,LOC107668741,LOC107576154 coding downstream 163033 1569404 ~ 1570066 (-)
sdf2l1 sdf2l1,LOC107704634,LOC107755844,LOC107668746 coding upstream 23740 1769436 ~ 1771792 (-)
ube2l3b ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding upstream 34469 1780165 ~ 1785389 (-)
LOC122344761 ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448 coding upstream 148084 1893780 ~ 1898590 (-)
LOC122344882 gnrhr4,LOC107715601,LOC107575089,LOC107690392,LOC107715190,LOC107691141 coding upstream 307009 2052705 ~ 2058733 (-)
LOC122346063 LOC107747844,LOC107554104,LOC107556635,LOC107667225 coding upstream 342089 2087785 ~ 2090156 (-)
G32572 NA non-coding downstream 66193 1666698 ~ 1666906 (-)
G32486 pes,LOC107704970,LOC107741508 non-coding downstream 125352 1606425 ~ 1607747 (-)
G32462 NA non-coding downstream 165950 1541226 ~ 1567149 (-)
G32463 LOC107599159 non-coding downstream 193731 1537398 ~ 1539368 (-)
G32440 NA non-coding downstream 219787 1513045 ~ 1513312 (-)
G32579 NA non-coding upstream 13948 1759644 ~ 1759857 (-)
G32581 NA non-coding upstream 16782 1762478 ~ 1762829 (-)
G32583 NA non-coding upstream 17579 1763275 ~ 1763648 (-)
G32586 NA non-coding upstream 20902 1766598 ~ 1766880 (-)
G32596 LOC107704652,LOC107741512 non-coding upstream 48808 1794504 ~ 1796557 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other downstream 38813 1673024 ~ 1694286 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other downstream 378685 1342606 ~ 1354414 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other downstream 396912 1312604 ~ 1336187 (-)
wdr31 wdr31,si:ch73-266o15.4,LOC107653158,LOC107667323,LOC107751417 other downstream 1101973 622514 ~ 631126 (-)
ddr2l ddr2l,LOC107704361,LOC107725118,LOC107550294,LOC107723312,LOC107667359,LOC108444179 other downstream 1150004 556654 ~ 583095 (-)
G32676 NA other upstream 220941 1966637 ~ 1967748 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other upstream 274400 2020096 ~ 2022922 (-)
G32857 NA other upstream 750808 2496504 ~ 2554146 (-)
snrnp27 snrnp27 other upstream 834852 2580548 ~ 2585452 (-)
add2 add2,LOC107668755 other upstream 840891 2586587 ~ 2605917 (-)

Expression


Co-expression Network