gtf2h2 (gtf2h2,gtf2h2c,LOC107672775,LOC107595044,LOC107592329,LOC107752507,LOC103032811,LOC102292669)


Basic Information

Item Value
gene id gtf2h2
gene name gtf2h2,gtf2h2c,LOC107672775,LOC107595044,LOC107592329,LOC107752507,LOC103032811,LOC102292669
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10042534 ~ 10046774 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238205.1
AAATCGACGGACAAAGGGTAGCCCGAGAGTAAATACGGGATGAATTGGTTTGTTGTTGTAGTCAACCGAGCAAGTTAAGTCACATGTTTATATGAACTTGAtagaaaaatacagtttataggcaattttatgtatttgttatttaaagtaCGGAAATCTATACAACGTATAAGGGAAGGTCGGTGAGGAGACCAAATGCAGAAGTCTATTGAAACATCTTAAACGGCAAAACTGTATAACATTAAccttaaagaaagctttgttaaaattataaaacatggATGAAGAACCAGAGAGAGCAAAACGCTGGGAAGGAGGATACGAACGAACATGGGAGGTCCTGAAGGAGGATGAATCTGGATCTCTCAAAGCCACTGTGGAGGACATTCTTTTCCAGGCGAAGAGGAAAAGAGTCTTTGAGAGTCATGGACAAGTTCGGCTTGGGATGATGCGGCACCTCTTTGTGATCATAGACTCGTCTAGATCAATGGAAGATCAAGACCTGAAGCCCAACAGGCTCACCTCAACCTTAAAGCTGATGGAGTATTTTGTAGAGGAATACTTTGACCAGAATCCAATCAGTCAGATAGGGATCATTACCACTAAGAACAAGAGGGCAGAGAAGCTCACTGATCTTGCAGGGAACCCTAAGAAGCATATAGCAGCTCTGAAGAAAGCCGTGGACGCCACGTGTGTTGGGGAACCATCTCTCTACAACTCTCTGAACTTGGCCATGCAAACTCTAAAACACATGCCTGCTCACACAAGCAAAGAGATCCTGGTTGTTTTCAGCAGTCTTACTACCTGTGACCCAGCCAACATCTACGAGCTGATCAAAACTCTGAACGGTTTGAAGATCAGAGTGTCTGTGATCGGTCTGTCGGCAGAGGTTCGGGTGTGCACCATCCTCACAAGAGAAACTGGAGGATCCTACAATGTAATTCTGGACGAGAGTCATTTTAAAGAGCTGCTGATGCTGCATGTGAAGCCGCCTCCAGCCAGCTCCTCCTCTGAGTGCTCCCTCATTCGCATGGGTTTCCCCCAGCATGTCATAGCCTCCATGTCTGATCAGGATGCCAAGCCTTCGTTCAGCATGTCGCACCTAGACAGCGCTGGTGAACCAGGACTCACTCTTGGTGGCTATTACTGCCCGCAGTGCAGAGCCAAATACACTGAACTGCCAGTGGAGTGTAAAGTGTGCGGTCTGACTCTAGTTTCCGCTCCTCACCTTGCACGTTCCTTTCATCACCTCTTCCCCCTTGAGGCCTTCCAGGAGACCCCCCTGGAAGAGTATGAGGGCGAGAGGTTCTGTGAAGCTTGCCAAGGAGAGTTGAAAGACAAAAGTGTGTTTACTTGTCTAACATGTAAAAAAGTGTTCTGCGTGGAGTGCGATCTCTTCATACATGACACACTGCACTGCTGTCCTGGCTGCATGCAGACTGACAGGACGTCCTGATGTAAGACATATGTGAACTTCAGCACAAGTAGAAACTGGGAGATgcagaagaaaaagaggaagtgaTGATCCACTGATTCAGATTATTACTGATTATTTAGGCTTAACATAATGAAAGCAAGTGGTTGTCAGGGTCTTTGGCATCTTTCTGGTTTTTGCATCATAGCTGTGCTTAAGCTGTTACTGTATGAAAGGCGCCCCCTATGGGGAAAAGTGTCTCACTGGACCAAATGAAACCAGCAtcagagaaaacattttgtgcCATTTTGTCAGTGTCCTATTTCTGTTTAAGCCACTGAGTTGTTATGATTTAACATGACATCTGTTTCTAGATTTAGTTTTCTATATACCATGTTATTATAGTTGCCTGTACTCAATTATGCAGATGCAAACTTGTAATTAGGTGTTGAGATGAAttgttcaaattaaattcttttaatACCGTA
>XM_043238206.1
ATACGAACGAACATGGGAGGTCCTGAAGGAGGATGAATCTGGATCTCTCAAAGCCACTGTGGAGGACATTCTTTTCCAGGCGAAGAGGAAAAGTCTCTGTCACGTTACAGAGTCTTTGAGAGTCATGGACAAGTTCGGCTTGGGATGATGCGGCACCTCTTTGTGATCATAGACTCGTCTAGATCAATGGAAGATCAAGACCTGAAGCCCAACAGGCTCACCTCAACCTTAAAGCTGATGGAGTATTTTGTAGAGGAATACTTTGACCAGAATCCAATCAGTCAGATAGGGATCATTACCACTAAGAACAAGAGGGCAGAGAAGCTCACTGATCTTGCAGGGAACCCTAAGAAGCATATAGCAGCTCTGAAGAAAGCCGTGGACGCCACGTGTGTTGGGGAACCATCTCTCTACAACTCTCTGAACTTGGCCATGCAAACTCTAAAACACATGCCTGCTCACACAAGCAAAGAGATCCTGGTTGTTTTCAGCAGTCTTACTACCTGTGACCCAGCCAACATCTACGAGCTGATCAAAACTCTGAACGGTTTGAAGATCAGAGTGTCTGTGATCGGTCTGTCGGCAGAGGTTCGGGTGTGCACCATCCTCACAAGAGAAACTGGAGGATCCTACAATGTAATTCTGGACGAGAGTCATTTTAAAGAGCTGCTGATGCTGCATGTGAAGCCGCCTCCAGCCAGCTCCTCCTCTGAGTGCTCCCTCATTCGCATGGGTTTCCCCCAGCATGTCATAGCCTCCATGTCTGATCAGGATGCCAAGCCTTCGTTCAGCATGTCGCACCTAGACAGCGCTGGTGAACCAGGACTCACTCTTGGTGGCTATTACTGCCCGCAGTGCAGAGCCAAATACACTGAACTGCCAGTGGAGTGTAAAGTGTGCGGTCTGACTCTAGTTTCCGCTCCTCACCTTGCACGTTCCTTTCATCACCTCTTCCCCCTTGAGGCCTTCCAGGAGACCCCCCTGGAAGAGTATGAGGGCGAGAGGTTCTGTGAAGCTTGCCAAGGAGAGTTGAAAGACAAAAGTGTGTTTACTTGTCTAACATGTAAAAAAGTGTTCTGCGTGGAGTGCGATCTCTTCATACATGACACACTGCACTGCTGTCCTGGCTGCATGCAGACTGACAGGACGTCCTGATGTAAGACATATGTGAACTTCAGCACAAGTAGAAACTGGGAGATgcagaagaaaaagaggaagtgaTGATCCACTGATTCAGATTATTACTGATTATTTAGGCTTAACATAATGAAAGCAAGTGGTTGTCAGGGTCTTTGGCATCTTTCTGGTTTTTGCATCATAGCTGTGCTTAAGCTGTTACTGTATGAAAGGCGCCCCCTATGGGGAAAAGTGTCTCACTGGACCAAATGAAACCAGCAtcagagaaaacattttgtgcCATTTTGTCAGTGTCCTATTTCTGTTTAAGCCACTGAGTTGTTATGATTTAACATGACATCTGTTTCTAGATTTAGTTTTCTATATACCATGTTATTATAGTTGCCTGTACTCAATTATGCAGATGCAAACTTGTAATTAGGTGTTGAGATGAAttgttcaaattaaattcttttaatACCGTA

Function

symbol description
gtf2h2 Predicted to enable zinc ion binding activity. Predicted to be involved in nucleotide-excision repair and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA repair and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH holo complex. Orthologous to several human genes including GTF2H2C (GTF2H2 family member C).
gtf2h2c Predicted to enable zinc ion binding activity. Predicted to be involved in nucleotide-excision repair and regulation of transcription by RNA polymerase II. Located in nuclear speck.

NR:

description
general transcription factor IIH subunit 2-like protein isoform X1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03142 TFIIH2, GTF2H2, SSL1; transcription initiation factor TFIIH subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238205.1 True 1902 mRNA 0.44 15 10042534 10046774
XM_043238206.1 False 1601 mRNA 0.46 15 10042534 10046456

Neighbor

gene id symbol gene type direction distance location
naaladl1 naaladl1,si:ch211-214j8.1,LOC107595014 coding downstream 8130 10028474 ~ 10034404 (-)
tango2 tango2,LOC107673391,LOC107595038 coding downstream 181160 9843314 ~ 9861374 (-)
tmem150aa tmem150aa,LOC107750168,LOC107672765,LOC107673390,LOC107709874 coding downstream 201455 9831999 ~ 9841079 (-)
si:ch211-102c2.8 LOC107595037,LOC107709829 coding downstream 213494 9816868 ~ 9829040 (-)
tcn2 tcn2,LOC107595007,LOC107709872,LOC107673413,LOC107672782,LOC107750173,LOC107592334 coding downstream 229404 9808869 ~ 9813130 (-)
oclnb ocln,oclnb,LOC107673430,LOC107595017,LOC107752508,LOC107592328,LOC107672774 coding upstream 124 10046898 ~ 10052562 (-)
marveld2b marveld2b,LOC107673429,LOC107595015,LOC107744415,LOC107672714,LOC107592409,LOC107752498 coding upstream 7205 10053979 ~ 10058774 (-)
ak6 ak6,LOC107595020,LOC107592327 coding upstream 12135 10058909 ~ 10060421 (-)
ankrd34bb LOC107672721,LOC107744482,LOC107595021,LOC107673432,LOC107592407,LOC107752509 coding upstream 27198 10073972 ~ 10079484 (-)
dhfr dhfr,LOC107673433,LOC107744483,LOC107672723 coding upstream 33517 10080291 ~ 10083670 (-)
G34877 NA non-coding downstream 264296 9777633 ~ 9778238 (-)
G34871 NA non-coding downstream 275927 9766268 ~ 9766607 (-)
G34869 NA non-coding downstream 278002 9764073 ~ 9764532 (-)
G34704 NA non-coding downstream 794493 9246920 ~ 9248041 (-)
G34594 NA non-coding downstream 981720 9013306 ~ 9060814 (-)
G35035 NA non-coding upstream 234635 10281409 ~ 10296141 (-)
G35047 NA non-coding upstream 290973 10337747 ~ 10341167 (-)
G35107 NA non-coding upstream 331992 10378766 ~ 10378998 (-)
G35139 abca2,LOC107672707,LOC107730718 non-coding upstream 466156 10512930 ~ 10513285 (-)
G35142 NA non-coding upstream 469897 10516671 ~ 10517342 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 639911 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 822006 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 1112481 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 1364816 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 1610948 8429700 ~ 8431586 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 278185 10324959 ~ 10335343 (-)
G35122 NA other upstream 414434 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 821590 10868364 ~ 10874064 (-)
G35384 NA other upstream 877153 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 913537 10960311 ~ 10969118 (-)

Expression


Co-expression Network