vsig10 (vsig10,LOC107704538,LOC107599650,LOC107668731,LOC107736326,LOC107716538)


Basic Information

Item Value
gene id vsig10
gene name vsig10,LOC107704538,LOC107599650,LOC107668731,LOC107736326,LOC107716538
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1506685 ~ 1512189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238215.1
GGGAACGAAAGCAAGTAAACAGGTTGAAGATGGACATGAGCGAAACGTGACACAAAATACACAGTATTCGAAGCGGGTTTAGAACGGGCCTTATTTTAACTGAATACCttctacttatttatttaatttatagaaaAGAGTTTGATGCGTTTGCCGGGAAAAACGAAGAAAGCGAGCGATTTTACCAAGGAAATATTTTATCCCATAATCTGATGGGATATCCTTACAGTCCTGAAATGATAACAtctgtaatatttctgcatcTGCTTCTTCTGTCACATCATACAGTGTCAGAGGAGCAGGTGCAGCGCTATGTTACTGGAGAGAAAGGAGGCAATACTACACTACAGTGTCTTGACCAGCCAGTCAATGCGTCTTCACTTCTTTATCGTTGGAAGAAATATGGGGCCGTTGTTGCAACCCAAAACCCCTTGAAGCCATCAGAGCATCTTTCCATTTCAAACAATGGCTCTCTTTGGATCACTGACCTCCAGTTTATAGATGAAGGCCGGTACGAATGTGAATCCCAAACAAAGGATGGCAGCTCATGGCAAACTCTCTCAAACACCCAGCTTCGAGTCGCCGaggGTCCAACTAGCGTCTCACTGGCCATACAGCCGGCAGCTCTACTACCGAATGGAACATTATATGTCAAAAAAGGCGCAGATGTGCATTTTAACTGCTCCAGTGAGTCTGTACCCTCACAAAACCTGGCATGGACTGTTAAAGATTTGGCGCTGGACAGTGATGACAGGGCGACTGGGAACAAATCATTTCTTGAGTTCTCAATAAATAACATCCAACCAAGCGATCAAGGGACGTACACGTGTACATCCCAGAATGCACTCTCCAAGACAACTGTGAACAAGAGCCAGGAGCTGCTAGTTTACTATGCTCCAGAGAGGCACCCAGAGTGCAGCTGGAAGATAGTAAATGAGCCATTGGACGTCTTGTTCATATGTAGCTGGTATGGAGGTTACCCCGTGCCCACTCTGGACTGGCATGAGGTCCTTGAAGAACATGTAATAGCCAAGGGTCCCACTGTCAACTCCACATCCAAGGAAACGGAGCACTTGGAGGTGCATGTGAATGGGTTTATACTGCACAGTGGTGAGGAAGTGAAGTGTATTGGACATCATGTGACTGGGGTGGAGAATTCCTGCTCCTTTAAGCTCAAGTCACCATATCCCTTAGGAGATCCCATGGTAACGGCTTTGGTGGGCAGCAGTATCACCCTCAGCTGTACTGAGAGCGAATCTCTGCCGCCGGCTAAGACTGTCTGGAtgcaaaaggacaaaaaaatcaTCAACACCACCTCCAAATATATCGTGTCTGATCATAACCCCAATTACAAACTCACTATAGTCAATGTAACGAAAGAAGATGAAGGGGTCTACTACTGCTACAGTATAAACCCTGTTGGCCCAAAAGAGCTGGAAGTGTATCTTACTGTGAAGACTTCTGCGGGTAATGAGGGGGCTGTGGTTGGAgtctttgtttctgttttgataATGATGATTGGAGTCATTATCGGTGTGACAATATATACAAAGCGGGATCGAATTTGTATTGGCTTGGGATTTAGTCATTTAGAGGATGACAGAGGGGATATACTGAGTTTAGTGGATTCAGACGAAGAGGAAATTTTCCATGAAACGGTTCCACAACTCCCCCCGCAGACAAACGGACATGCAACCACACTCGTAGAGATTCACAGGATACCATCCAGTAAGTCCGCAGCGTCCCAAATGGCATTTAGATgCGATCATGAAGACAATGCAGACAGTACAGTGCAAAATAATGATCAAACACATCCAGAACCACCACAACAGACAGCACACTGTTAGTTATCAGTTTAAATGTACAGAAACGAAATTTTCCAAATGGTCAATTCTgataaattattagtatttttgtgtGGTATTTTGCTTGTATAATATTCCATCAATctgtgtaaagtgtaaagttattaaactcattttagagagaggccctgtttttattttcagtattagTTTTTAACAGACTGGCCTCAGTTCATAACATTAAAACTTGTACCAGTGAAATGTGTTATGAAACGTTATTATTACTTGAACTGGCTTGAATGATGGTTTCTGTAAAATTGTATGGGTGAACCTGAACAAAATATAACCGGGTCATATTTCgtggcaaaataataataataaaccctTGATAATacgaaa
>XM_043238216.1
GGGAACGAAAGCAAGTAAACAGGTTGAAGATGGACATGAGCGAAACGTGACACAAAATACACAGTATTCGAAGCGGGTTTAGAACGGGCCTTATTTTAACTGAATACCttctacttatttatttaatttatagaaaAGAGTTTGATGCGTTTGCCGGGAAAAACGAAGAAAGCGAGCGATTTTACCAAGGAAATATTTTATCCCATAATCTGATGGGATATCCTTACAGTCCTGAAATGATAACAtctgtaatatttctgcatcTGCTTCTTCTGTCACATCATACAGTGTCAGAGGAGCAGGTGCAGCGCTATGTTACTGGAGAGAAAGGAGGCAATACTACACTACAGTGTCTTGACCAGCCAGTCAATGCGTCTTCACTTCTTTATCGTTGGAAGAAATATGGGGCCGTTGTTGCAACCCAAAACCCCTTGAAGCCATCAGAGCATCTTTCCATTTCAAACAATGGCTCTCTTTGGATCACTGACCTCCAGTTTATAGATGAAGGCCGGTACGAATGTGAATCCCAAACAAAGGATGGCAGCTCATGGCAAACTCTCTCAAACACCCAGCTTCGAGTCGCCGaggGTCCAACTAGCGTCTCACTGGCCATACAGCCGGCAGCTCTACTACCGAATGGAACATTATATGTCAAAAAAGGCGCAGATGTGCATTTTAACTGCTCCAGTGAGTCTGTACCCTCACAAAACCTGGCATGGACTGTTAAAGATTTGGCGCTGGACAGTGATGACAGGGCGACTGGGAACAAATCATTTCTTGAGTTCTCAATAAATAACATCCAACCAAGCGATCAAGGGACGTACACGTGTACATCCCAGAATGCACTCTCCAAGACAACTGTGAACAAGAGCCAGGAGCTGCTAGTTTACTATGCTCCAGAGAGGCACCCAGAGTGCAGCTGGAAGATAGTAAATGAGCCATTGGACGTCTTGTTCATATGTAGCTGGTATGGAGGTTACCCCGTGCCCACTCTGGACTGGCATGAGGTCCTTGAAGAACATGTAATAGCCAAGGGTCCCACTGTCAACTCCACATCCAAGGAAACGGAGCACTTGGAGGTGCATGTGAATGGGTTTATACTGCACAGTGGTGAGGAAGTGAAGTGTATTGGACATCATGTGACTGGGGTGGAGAATTCCTGCTCCTTTAAGCTCAAGTCACCATATCCCTTAGGAGATCCCATGGTAACGGCTTTGGTGGGCAGCAGTATCACCCTCAGCTGTACTGAGAGCGAATCTCTGCCGCCGGCTAAGACTGTCTGGAtgcaaaaggacaaaaaaatcaTCAACACCACCTCCAAATATATCGTGTCTGATCATAACCCCAATTACAAACTCACTATAGTCAATGTAACGAAAGAAGATGAAGGGGTCTACTACTGCTACAGTATAAACCCTGTTGGCCCAAAAGAGCTGGAAGTGTATCTTACTGTGAAGACTTCTGCGGGTAATGAGGGGGCTGTGGTTGGAgtctttgtttctgttttgataATGATGATTGGAGTCATTATCGGTGTGACAATATATACAAAGCGGGATCGAATTTGTATTGGCTTGGGATTTAGTCATTTAGAGGATGACAGAGGGGATATACTGAGTTTAGTGGATTCAGACGAAGAGGAAATTTTCCATGAAACGGTTCCACAACTCCCCCCGCAGACAAACGGACATGCAACCACACTCGTAGAGATTCACAGGATACCATCCAgCGATCATGAAGACAATGCAGACAGTACAGTGCAAAATAATGATCAAACACATCCAGAACCACCACAACAGACAGCACACTGTTAGTTATCAGTTTAAATGTACAGAAACGAAATTTTCCAAATGGTCAATTCTgataaattattagtatttttgtgtGGTATTTTGCTTGTATAATATTCCATCAATctgtgtaaagtgtaaagttattaaactcattttagagagaggccctgtttttattttcagtattagTTTTTAACAGACTGGCCTCAGTTCATAACATTAAAACTTGTACCAGTGAAATGTGTTATGAAACGTTATTATTACTTGAACTGGCTTGAATGATGGTTTCTGTAAAATTGTATGGGTGAACCTGAACAAAATATAACCGGGTCATATTTCgtggcaaaataataataataaaccctTGATAATacgaaa

Function

symbol description
vsig10 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Is expressed in EVL; ectoderm; otic vesicle; peripheral olfactory organ; and pharynx. Orthologous to human VSIG10 (V-set and immunoglobulin domain containing 10).

NR:

description
PREDICTED: V-set and immunoglobulin domain-containing protein 10

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238215.1 True 2204 mRNA 0.43 9 1506685 1512189
XM_043238216.1 False 2171 mRNA 0.43 9 1506685 1512189

Neighbor

gene id symbol gene type direction distance location
wsb2 wsb2,LOC107704505,LOC107716543,LOC107668737,LOC107599617 coding downstream 453 1501467 ~ 1506232 (-)
ksr2 ksr2,LOC107599618 coding downstream 11998 1424404 ~ 1494687 (-)
nos1 nos1,LOC107599638,LOC107726721,LOC107668720 coding downstream 103561 1355359 ~ 1403124 (-)
nipsnap1 nipsnap1,LOC107599167,LOC107653245,LOC107726724,LOC107599621,LOC107667606,LOC107755818 coding downstream 164632 1337163 ~ 1342053 (-)
rnft2 rnft2,LOC107599619,LOC107704451,LOC107667191 coding downstream 199148 1291831 ~ 1307537 (-)
LOC122345935 NA coding upstream 12713 1524902 ~ 1526918 (-)
LOC122344835 aifm3,LOC107668732,LOC107716541,LOC107599649,LOC107755821,LOC107653263,LOC107599166 coding upstream 31229 1543418 ~ 1564546 (-)
cldn26 LOC107716548,LOC107653273,LOC107755822,LOC107599648,LOC107668741,LOC107576154 coding upstream 57215 1569404 ~ 1570066 (-)
lztr1 lztr1,LOC107716547,LOC107704547,LOC107755835,LOC107668721 coding upstream 59959 1572148 ~ 1579628 (-)
p2rx2 p2rx2,LOC107704555,LOC108431687 coding upstream 85658 1597847 ~ 1603060 (-)
G32409 NA non-coding downstream 214922 1289278 ~ 1291763 (-)
G32292 NA non-coding downstream 454506 1051867 ~ 1052179 (-)
G32275 NA non-coding downstream 627543 877910 ~ 879142 (-)
LOC122344906 LOC107676118 non-coding downstream 683856 820190 ~ 822829 (-)
G32245 NA non-coding downstream 788275 718137 ~ 718410 (-)
G32440 NA non-coding upstream 856 1513045 ~ 1513312 (-)
G32463 LOC107599159 non-coding upstream 25209 1537398 ~ 1539368 (-)
G32462 NA non-coding upstream 29037 1541226 ~ 1567149 (-)
G32486 pes,LOC107704970,LOC107741508 non-coding upstream 94236 1606425 ~ 1607747 (-)
G32572 NA non-coding upstream 154509 1666698 ~ 1666906 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other downstream 152271 1342606 ~ 1354414 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other downstream 170498 1312604 ~ 1336187 (-)
wdr31 wdr31,si:ch73-266o15.4,LOC107653158,LOC107667323,LOC107751417 other downstream 875559 622514 ~ 631126 (-)
ddr2l ddr2l,LOC107704361,LOC107725118,LOC107550294,LOC107723312,LOC107667359,LOC108444179 other downstream 923590 556654 ~ 583095 (-)
kcnv2b atp5ib,atp5i,atp5ia,kcnv2b,LOC107703581,LOC107725101,LOC107704252,LOC107594594,LOC107723293 other downstream 1118807 382052 ~ 387878 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other upstream 160835 1673024 ~ 1694286 (-)
G32676 NA other upstream 454448 1966637 ~ 1967748 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other upstream 507907 2020096 ~ 2022922 (-)
G32857 NA other upstream 984315 2496504 ~ 2554146 (-)
snrnp27 snrnp27 other upstream 1068359 2580548 ~ 2585452 (-)

Expression


Co-expression Network