LOC122344688 (LOC107743064,LOC107698017,LOC107734413)


Basic Information

Item Value
gene id LOC122344688
gene name LOC107743064,LOC107698017,LOC107734413
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30920817 ~ 30941882 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238238.1
CAGCACAGCTGAGAGGGAGCGTCATGGCGGCGTAGAGCGGATTACTCAATGTTTACATTCCGTTTACCGTCTCTTTTCTGACATTACTCCGGTTTTACCGCGACGGGGCGCGTCTTCTGCGGGGAGCGCGTGAAGCGGactttctttctttcccggAGCATCTTCTCGACGCAGACAGACCGGTCCAGGTCCGGAAGCAGACGCAGGATCAGGTGGGTGGTGTGTTTGTCGTCTGTGGGGCTGAGATCCTCTCTGTCCGCTCGTCCCGGGGTCATGGTTGAAGAGGGCCGGCGGTGTTTGGAGGCCCGTGGGAGCCCCGTCCCCGAGGATCAGCAGGTCCCGTTCCCGCTGCTGCAGGGCGAGTGTGTGGAGCACGTCTCCAGAGCAGAGGAGTCCCTCATTGCCTTAACCAGCTACCGCCTTCACTTCAAACTACAGGAGAACATCATCAATGTTCCTCTGCAGCTGATTGAAAGCGTGGAGTGCCGGGATCTGACTCAGCTGCAGCTCACCTGTAAAGACTGCAAGCTCATCAGGTGTAACTTCCTGTCGGCGGAGCAGTGTCAGGATTGGCTGAGGAGGATCAGCTCAGTCGTTCGTCCGCCGGCGCGCCTCGAGGAGCTCTTCGCCTTCGCCTTCCTCTCGTGTAGCTTCAGCATCTCTGCAGAGGACAGAGAGGTGCATGATGGGATCTGCCGCGCAGgagGAAACCAGCGGAGGTTCAGACGAGAAATGGAGAGGATGGGCTTCGACACACACAGTGCCTGGAGAATCTCCACCATCAACAGCAACTAcagGCTTTGTGCCAGTTACCCCGAGCAAATAATCGTGCCTGCCGCCGTCTCTGACCAGGAGCTGGAGAGCGTGGCAGCCTTCAGATCGTGGAAGAGGCTCCCGGCCGTCGtttacagACACCAGAGTTCGGGCGCTGTGATTGGTCGCTGCGGGCAGCCAGAGGTCAGCTGGTGGGGTTGGCGTAATGCTGACGACGAGCACCTGGTCCAGGCCATCGCCAAAGCCTGCGCCGAGGATCGGGCTGAGAACACGGCGCAAGCTAACGGCTCCTGCGTTCCTCACCGCGTCCCCGGAGAGCTCGGAGACTCCGTGGCCAATGGGAGCGTGGCAGAGGCGGAGCCAAAGGCCACGCCCTCTCCGAAGCTGCTGATAATGGACGCTCGCTCGTATGCGTGCCGCCGAGCCAATCGGGCCAAAGGAGGCGGCTGTGAGTGTCCAGAGTACTACCCCAGCTGTGAGGTCATGTTCATGGGGATGGCCAACATCCACTCCATCCGGAAGAGCTTCCAGAGTCTGCGGACGCTCTGTGCTCAAGTGCCTGATCCGGTCAACTGGCTGTCGGCGCTGGAGGGCACTAAATGGCTGCAGCATCTGTCTCTGCTGCTGAAGGCGTCTCTGCTGGTGGTGAACGCTCTGGACCGAGACCACAGGCCTGTGCTGGTGCACTGCTCCGACGGGTGGGACCGAACGCCTCAGATAGTGGCTCTGTCCAAACTACTGCTGGACCCCTTCTACAGGACCATCCagGGTTTTCAGGTGCTGGTGGAGACCGAGTGGCTGGATTACGGTCACAAGTTTGCTGACCGCTGCGGTCACGGGGAGAACTCGGAGGACCTGAACGAGCGCTGTCCGGTGTTCCTGCAGTGGCTGGACTGTGTTCATCAGCTCCAGAGACAGTTCCCCTGCTCCTTCCAGTTCAACGAGGCCTTTCTGGTGAAGTTAGTTCAGCACTCGTACTCGTGTCTGTTCGGGACGTTTCTGTGTAACAGCGTGAAGGAGCGCGAGGAGCAGAGCGTTCAGGAGAAGACCTGCTCCGTCTGGTCTCTGCTGAGGCCCGTCAACACTTCCTTCCACAACATCCTGTACTCGCCGCGCTCCGAGACGGTTTTGCACCCGGTGTGTCACGTGAGGAACCTGATGCTGTGGAGTGCCGTCTACCTGCCTAACTCCGCCCCCTCCACGCCCTCCGATGAGTCATGTGTGCCAAGCTCCGCCCCCTCTGCCTCGCCCGACGACACACCTGTGAGCAGGTTACCAAAGACACGGTCGTGTGACGATCTGCCCACGTCCTGTGAGGGTTTGACCCCAAACCGCCGCAGCAGTGACCCGCACCTGAACGAGAAGTGGCACGACCGTCTTCTCTCGCTGGAGAAGAGCACAGAGACCGACTTAAACCACTCGCAGACGCCGGAGCGAGACGCCCCGGATCAGACTCCTCCCGTTTCTGAGCAACTAAACACAGAGCGCCCAGAAAACGGGGCGGAGCTTTCTGTGTCCGACAGCCAAACGCAAGACACCTCACAGGAAGAGAGCAGGAAGCCGGGTCTTCTGAAAAACACACCTGCCTTCGATATCCCAGAGGCGCCGGCTCTGATTGAGAGCAACGGTGTGGACCAAACGCCCGAGGAACGCACACAAGCATCCCAACAAACTGTCGAAAACCACGTGTTAACGCCAGACGGACTGCATCGAGAGCATTGCACTATTACCCATGATTCTTCAGAATCCAGCAGCCAATCTTCCACGGAGAGTCCTTCCAGTCCGACGCGCACAACTCGGACTCTTAATGGCGTCTGCTCACCTTCCCTTTCTCCGCCGGCCGATCGGGACGCAGCGGGAGACGCTTCTCCGACGCCGGGCCACAAGCGCTCGCCGGGTGTTTCCGGGCGTTTATCGGCGCTCGGGCACCTGGAGAAGGACGGCTTGGATCTGCACAGCGACGCCGTCCAGGTGCGTCTGCGGCAGATGGAGGCGGGGCATCAGCTGCAGGTGGAGACCCTGAAGAAACAGGTGCAGGAGCTCTGGAGCCGTCTACACGTCAACGGGAAGCTGACGTCTCTTCCGGACGGGGAGAATAACGTGGAGTCGGGCTGTTTGCAGCGCTGCAGGAACACAGATCTCCTGCCCGAGTCCAGCTGGGAGCAGATGGAGCAGAGCGAggcggagTGGTTCTCGGGCggctgcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatcagaAGGATCTGATGTAAACACGTTCGGATCGTTCCCATCTCATATTAGAGTAAATAATGAAGTGATTGCTgagagatgaagaaataaatgagtTATTAAGAGCCCGATTAAGAAAAAGGAGACctgtttaatatgaaataagtACATGTTCGCGTGGGACATATGTAATGTTATTAATCAACTTTCCATGAGAGGTGGAGCTATAAAttgccacaaaaaaaatatattttgtaaataaaggaGCAAGCCTTTCCCGGACCCTGCTA

Function

NR:

description
PREDICTED: myotubularin-related protein 3-like

GO: NA

KEGG:

id description
K18082 MTMR3_4, ZFYVE10_11; myotubularin-related protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238238.1 True 3284 mRNA 0.58 20 30920817 30941882

Neighbor

gene id symbol gene type direction distance location
rabepk rabepk,LOC107743065,LOC107579283 coding downstream 85083 30831189 ~ 30835734 (-)
LOC122344907 NA coding downstream 150910 30765631 ~ 30769907 (-)
golga2 golga2,LOC107658391 coding downstream 165877 30734104 ~ 30754940 (-)
ciz1a ciz1a,LOC107687257,LOC107571633,LOC107740230,LOC107689607 coding downstream 248721 30660119 ~ 30672096 (-)
surf2 surf2,LOC107740795,LOC107581206,LOC107743090 coding downstream 264860 30653163 ~ 30655957 (-)
cux2a NA coding upstream 632 30942514 ~ 30951488 (-)
mcc mcc,LOC106565572 coding upstream 36711 30978593 ~ 31052589 (-)
rcl1 rcl1,LOC107701854,LOC107655287 coding upstream 112042 31053924 ~ 31064355 (-)
LOC122344691 NA coding upstream 132161 31074043 ~ 31081265 (-)
rplp0 rplp0,LOC107654305 coding upstream 166841 31108723 ~ 31112733 (-)
G40762 NA non-coding downstream 1217 30866243 ~ 30919600 (-)
G40751 hspa5,LOC107687227,LOC107567952 non-coding downstream 73939 30821125 ~ 30846878 (-)
G40739 NA non-coding downstream 148793 30770714 ~ 30772024 (-)
G40708 dnm1,LOC107568151,LOC107658356 non-coding downstream 195591 30720192 ~ 30725226 (-)
LOC122345983 NA non-coding downstream 210139 30708773 ~ 30710678 (-)
LOC122344701 NA non-coding upstream 17562 30959444 ~ 30963507 (-)
LOC122344702 NA non-coding upstream 32436 30974318 ~ 30974883 (-)
G40782 NA non-coding upstream 35727 30977609 ~ 30978322 (-)
G40794 NA non-coding upstream 96523 31038405 ~ 31039457 (-)
G40798 NA non-coding upstream 146310 31088192 ~ 31094923 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 94459 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 128098 30789633 ~ 30792719 (-)
G40711 NA other downstream 187457 30631028 ~ 30733360 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 307676 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 827241 30087966 ~ 30093576 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 389467 31331349 ~ 31350449 (-)
apooa apoo other upstream 760571 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 779388 31721270 ~ 31722906 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 1172014 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 1272149 32214031 ~ 32293782 (-)

Expression


Co-expression Network