CI01000004_15229290_15233374 (PEX19)


Basic Information

Item Value
gene id CI01000004_15229290_15233374
gene name PEX19
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15228776 ~ 15234597 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15229290_15233374.mRNA
AGATAAAACTGCGGAAGTGACTGAATTAACGAGTAAACATGTAGGGGGCACTGTACCAGAGAAATAAAGTATTACTCAAATTCGAAAACCATATAAAATAAAATAATAATAATAATCATCACATTTTCTTCAGTCGATATGGATTGGTGGTGTTTTAAAACGTATAGACCTAGGCCTAAACATTTTGTAAAGGCTACTTTAAACATAGCAGAAGCACAATATACTTTAAACATGTTTATTTATTTAATTATTTATTTATTTATTTATTAGATAGAACACATTCATTAACAATTAAGAATAATAAACCTTCAAAACGCATACAAATAAAACTAATAAAGATAATGATGGTATGCTAATAATTATTATTGAACGAGAACGCAGTTGTTATATTTATTCAAATATTGCTATCTGATAAATTCCCTAAAAAAATAAAAAAAAAAAATCTTTCAAAGATGTTTTTATTGGACGTCATAATTTTGCGACAAATTAGCTGGTCTTGTCATTGAGAAGCAAAATGGCGTCAGCATCAGAACATCAGGGTGCTCCAGACAACGAACTGGACGAATTATTAGACAGTGCTCTTGATGATTTTGAGAAGACCAGTGTGCCCCCTACGGCCCCTGAGGCCCCCACTGCCCCTGATGCAGGAACGAGTGACGAGAAGCCCCCTCTGCTGGAGGACAGTAAGTTCTTTGAGTCTCTCTTTGATGGTGAGATGGCCAATCAAGCACGTGAGGAGTGGGAGAAAGCCATGGCTGAGCTAGCGCAAGAAGAACCTGAGCTTCTACAACATTTTCATAAGCTGTCCGAGGCAGCAGTTGTTTTGACAATATTTTTTAAAAATTTAGGCACAGATGTAACTTCACAGCAAGAGTTCACCTCCTGTCTTAAAGAGACCCTTAGTGGTTTGGCAAAAAATGCAGACAACCTGCAGAGTGCAGGACTGGCTGGAGATGATCTGGTAAAGACCTTGGAGAACTTGGGATTGAATGAAAATGGGGAGGGAGGAGGAGAAGATGGCAATATCCTCCCAATTATGCAGTCCATCATGCAGAACCTTTTGTCTAAAGAAGTCCTATACCCTTCTCTTAAAGAGATAACGGAGAAGTACCCAGAATGGTTGGAGGGCAACAGGCAGTCCCTCCCCCCAGACCAATTCATGCGGTATGAGCAGCAGTACAAGATAATGGGAGAGATATGCAGCCAGTTTGAGAAAGATGGAGACAAAGACAGCACATTTGAAAACATTCTAGAACTCATGCAAAAGCTGCAAGACTTGGGTCAACCTCCAAAAGAGCTTGCTGGAGAGGCACCTCCCGGCTTGAATTTTGACCCCGAAGCTCTGCACCTTCCTGGAGCACAAGGGCTTCCTGGAGCAGAGCAGTGCTCAGTCATGTGATCTCAATGAGGTCAAATTTATGTATGTTTAAAAACGACACAATTTGGAGCTAATTATCTGAACCTGAATTGGACACAGTTGATCATGCTCCGCTTTTAAAGGAGTTTGCTTTTGTGTCTGCACTGAAACTGTGAACTTCACTACATTAATTTTACCTTGTAGTTCTCGTCCACAGAGGTTCTTTTCATATTCATCCCTAATCCGTTTACTGTAGTCACTGTAGAGCAGCTCCTAATGTTTTGAGTGAAGCTTGATATCTCAGTGTGCCGACGGCTTGGTAAGAATCAAGCACATTTGACAGGTAGTGCGGTGAAGTGTGTTTTGAAGAAGTAGAGACAAATGCATGGAGCTCACGGTGACAGGAAAAGTATTTCCAGTTTAATTTCACTTTTAAATCTCAGAAGAATGGTCAGGGTCTACAAATAGCTTTCATCAGATTGATGAAATCATTTTAATACAAAGTTTAATATCTATCTATTCTCACTCTATATTACCACAGTTTCGTTTTTGCGATTTGATAACTAATCAGTGACCAAAATGGATCTCTCAGACACTTCAGATTCAGGTTTATAGTATATCCATAATATCATTCTGTCACACATAGGCTGCATTTGTGTTTGAGTAGAATAATTCGCTCTACTTGTGTCTTCTAATGGTTACTAGAGCGGTTTGAAGTAGTGAATTGCCGTGTAGATCTAAATCATTCCCATCATTCCTGTGGTGGTGCCTCTGTGATGTGCTGTTGGCATAATAGTCCTAATTTGCCTTGATTAAAAGAATAATGTTTCATAGTTCAAAATGAATACTCTGTATTAACACTCAAAGAACATCACCTTAAATCCCAGGATACCTCAAAAAAAGGTTAAAGTTTGCAGTCATTTGCTTTTGAGAGGATGTTTACATGGTTCTTTTGCGAACAGGTTTGAATGGGATCCTTTCACAGGATCAAATGTGGAACTGATCATCGACTTGCTTTCTCGAAACATGCCACTGGTTATATTTAGTATGGTATTTTCATAGTATGAAAAGTATGAGGTGGATAGAATGGGTATGTAGATGAACGGGACAATAATATTCAACGGTTACAACACTCAGGGGTTGCTCAAACACCCAAGCACTTAAATCAGCTCATCATTATTCTTTATCATGTTAAATGTTCCCTTAGATGTACAGTCCATTGGTCTTGTATCTACATGAAAGAACTGCAATTTGCAAAAATCAAA

Function

symbol description
pex19 Predicted to enable peroxisome membrane targeting sequence binding activity. Predicted to be involved in protein import into peroxisome membrane. Predicted to act upstream of or within peroxisome organization. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 12A. Orthologous to human PEX19 (peroxisomal biogenesis factor 19).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13337 PEX19; peroxin-19

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15229290_15233374.mRNA True 2622 mRNA 0.39 8 15228776 15234597

Neighbor

gene id symbol gene type direction distance location
CI01000004_15200553_15209521 SLC1A8B coding upstream 18952 15198242 ~ 15209824 (+)
CI01000004_15126731_15131774 NA coding upstream 96538 15126684 ~ 15132238 (+)
CI01000004_15110181_15110483 NA coding upstream 118151 15109598 ~ 15110625 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB coding upstream 131603 15091200 ~ 15097173 (+)
CI01000004_15056504_15062261 RABGAP1L2 coding upstream 165596 15055922 ~ 15063180 (+)
CI01000004_15237719_15253901 COPA coding downstream 3122 15237719 ~ 15254158 (+)
CI01000004_15260416_15262090 APODA.2 coding downstream 25642 15260239 ~ 15262240 (+)
CI01000004_15277204_15286845 SAMD7 coding downstream 42607 15277204 ~ 15286987 (+)
CI01000004_15291659_15296777 NA coding downstream 57062 15291659 ~ 15297847 (+)
CI01000004_15316323_15317231 NA coding downstream 81350 15315947 ~ 15317342 (+)
G33896 NA non-coding upstream 4862 15223661 ~ 15223914 (+)
G34032 NA non-coding upstream 68716 15106736 ~ 15160060 (+)
G34031 NA non-coding upstream 122077 15106422 ~ 15106699 (+)
G34028 NA non-coding upstream 124608 15103966 ~ 15104168 (+)
G34027 NA non-coding upstream 125199 15103350 ~ 15103577 (+)
G34055 NA non-coding downstream 1533 15236130 ~ 15236383 (+)
G34061 NA non-coding downstream 37047 15271644 ~ 15271905 (+)
G33857 NA non-coding downstream 184664 15419261 ~ 15425806 (+)
G34090 NA non-coding downstream 198571 15433168 ~ 15433373 (+)
G34100 NA non-coding downstream 246666 15481263 ~ 15481530 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1191876 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2573065 12646838 ~ 12652570 (+)
G31865 NA other upstream 3033629 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3561117 11666900 ~ 11667659 (+)
G34220 NA other downstream 704760 15939357 ~ 15939950 (+)
G33815 NA other downstream 828818 16063415 ~ 16066464 (+)
G34400 NA other downstream 1742731 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location