rcl1 (rcl1,LOC107701854,LOC107655287)


Basic Information

Item Value
gene id rcl1
gene name rcl1,LOC107701854,LOC107655287
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31053924 ~ 31064355 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238245.1
TCGTGGCTCCGTCTCCGCTCGACTCCGGCTCCGTGTAGAAACACGTGTGTTCCTCGCATCATGGAGTTTGAGGGCTGCTGCTGCTTCAGACAGAGACTCGTGTTGTCCACGCTGAGCGGAAAACGGGTGAAGATACGAAACATCAGATCTAAAGATGACAATCCCGGCCTGCGAGaCTTTGAAGCCAGCTTCATCCTCCTCGACAAAGTGACCAACGGCACCCGAATCGAGATCAACCAGACGGgtacGGTGTTGTTCTATCAGCCGGGTCTGCTGAGCGGCGGCTCGGTGGAGCACGAGTGTAACGTCCAGCGCTCCGTGGGTTATTATCTGGAGGCTCTGCTCATGCTGGCTCCGTTCATGAAGACGCCGCTCAGAGTCGTGCTGAAGGGCGTCACCAACGACCCCACGGACCCCTCGGTGGATCTTCTGAAGGTCACCGCTGTTCCTTTGATGAAGAAGTTTGGGATCGATGGAGACGGCCTGGAGATAAAGGTGCTGAAGAGAGGCATGGCTCCCTCGGGAGGAGGCGAGGTGCTCTTCACGTGTCCTGTTCGGCGCTCCATCAAACCCCTGCAGCTCACAGAACCGGGGAAGATCAAGAGGATCCGAGGAGCGGCGTTCTCGGTGCGAGTTTCTCCTCAGATGGCCAACAGGATCGTGGACGCGGCCAGGAGCGTCCTGAACAAATTCATCCCGGATATTTACATCTACACCGACCACATGAAGGGAGCCAGCTCTGGGAAGTCTCCGGGCTTCGGCCTGACGCTGGTCGCTGAGACGCTGAGCGGAGCGTTCCTGGGAGCAGAGGTCGTGTCCACCCCACAGGGACAGGGAGAGACGCTGCTGCCGGAGGACTTGGGCAGGAAGTGTGCTAAACTACTCCTGGAGGAGATCTACAGGGGAGGCTGTGTGGATTCGACCAATCAGAGTTTGGCTCTCCTGTACATGACGTTAGGTCAGCAGGACGTGTCTAAAGCGCTGCTAGGAGCCCTCTCCCCCTACACGATGGAGTTCCTGAGACACATCCGAGACTTCTTTCAGATCATGTTCAAGATCGAGCAACAGAAAGCTGAGGAAGATGAacggagaggaggagagaaggTCCTGATGACGTGCGTCGGAGTCGGATACAGCAACATCAGCAAAACCATCAAATAAACAGCGTTTTATAGcctttttgtgtttcactgtAGAACGATGACATTCCCGTATTCTTTCATAAAGAAGTGCGTGCTGAACATTG

Function

symbol description
rcl1 Predicted to enable endoribonuclease activity. Predicted to be involved in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within RNA processing and ribosome biogenesis. Located in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; liver; optic tectum; and optic vesicle. Orthologous to human RCL1 (RNA terminal phosphate cyclase like 1).

NR:

description
RNA 3'-terminal phosphate cyclase-like protein

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005730 nucleolus cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238245.1 True 1246 mRNA 0.55 10 31053924 31064355

Neighbor

gene id symbol gene type direction distance location
mcc mcc,LOC106565572 coding downstream 1335 30978593 ~ 31052589 (-)
cux2a NA coding downstream 102436 30942514 ~ 30951488 (-)
LOC122344688 LOC107743064,LOC107698017,LOC107734413 coding downstream 112042 30920817 ~ 30941882 (-)
rabepk rabepk,LOC107743065,LOC107579283 coding downstream 218190 30831189 ~ 30835734 (-)
LOC122344907 NA coding downstream 284017 30765631 ~ 30769907 (-)
LOC122344691 NA coding upstream 9688 31074043 ~ 31081265 (-)
rplp0 rplp0,LOC107654305 coding upstream 44368 31108723 ~ 31112733 (-)
gusb gusb,LOC107719352,LOC107701859,LOC107654306,LOC107734369,LOC104964597,LOC107591494 coding upstream 78222 31142577 ~ 31155113 (-)
ca4a LOC107663683,LOC107654307,LOC107734368,LOC107719346 coding upstream 126808 31191163 ~ 31196967 (-)
LOC122345520 LOC107663881,LOC107725093,LOC107654310,LOC107734346,LOC107563427 coding upstream 305455 31369810 ~ 31454508 (-)
G40794 NA non-coding downstream 14467 31038405 ~ 31039457 (-)
G40782 NA non-coding downstream 75602 30977609 ~ 30978322 (-)
LOC122344702 NA non-coding downstream 79041 30974318 ~ 30974883 (-)
LOC122344701 NA non-coding downstream 90417 30959444 ~ 30963507 (-)
G40760 LOC108429729,LOC107563441 non-coding downstream 128727 30920851 ~ 30925197 (-)
G40798 NA non-coding upstream 23837 31088192 ~ 31094923 (-)
LOC122344940 NA non-coding upstream 156462 31220817 ~ 31222257 (-)
G40841 NA non-coding upstream 208331 31272686 ~ 31273001 (-)
G40842 NA non-coding upstream 215822 31280177 ~ 31280431 (-)
G40995 NA non-coding upstream 358730 31423085 ~ 31506097 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 227566 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 261205 30789633 ~ 30792719 (-)
G40711 NA other downstream 320564 30631028 ~ 30733360 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 440783 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 960348 30087966 ~ 30093576 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 266994 31331349 ~ 31350449 (-)
apooa apoo other upstream 638098 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 656915 31721270 ~ 31722906 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 1049541 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 1149676 32214031 ~ 32293782 (-)

Expression


Co-expression Network