rplp0 (rplp0,LOC107654305)


Basic Information

Item Value
gene id rplp0
gene name rplp0,LOC107654305
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31108723 ~ 31112733 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238248.1
GACCAATCAGCGCGCAGTCACGCCTCCGctcgattctgattggatgATCCTATGGTACTAATATTCTGCCGCTTCCTGCAGCGGCCTCTTTCTTTCACGCGTCCCTACAGCGAGATTTTTCAACCTTGTCTTTAAACCGGCTGTTCACCGATCCTTGGAAGCACTGCCAAGATGCCCAGGGAAGACAGGGCCACGTGGAAGTCCAACTACTTTCTGAAAATCATCCAACTGCTGGATGACTACCCCAAGTGTTTCATCGTGGGCGCGGACAATGTCGGCTCCAAGCAGATGCAGACCATCCGTCTGTCCCTGCGGGGCAAGGCCGTCGTGCTCATGGGCAAAAACACCATGATGAGGAAGGCCATCCGTGGCCACCTGGAAAACAACCCTTCTCTGGAGAGGCTGCTTCCCCACATCCGCGGGAACGTGGGCTTCGTCTTCACCAAGGAGGATCTGACCGAGGTCCGGGATCTGCTGGTGGCGAACAAAGTGCCCGCTGCCGCCCGCGCCGGTGCCATCGCCCCGTGTGAGGTGACCGTCCCGGCTCAGAACACCGGCCTCGGTCCCGAGAAGACCTCCTTCTTCCAGGCTTTGGGAATCACCACTAAGATCTCCAGAGGAACCATTGAAATCTTGAGCGACGTTCAGCTCATCAAAACCGGAGACAAGGTGGGCGCCAGCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCCTTCTCCTACGGGCTGATCATCCAGCAGGTGTACGACAACGGCAGCGTCTACAACCCCGAGGTGCTGGACATCACTGAAGATGCTCTGCACAAGAGGTTCTTGGAGGGTGTGAGGAACATCGCCAGTGTGTGTCTGCAGATCGGCTACCCGACGCTCGCCTCCATCCCTCACTCCATCATCAACGGATACAAGAGGGTCCTGGCTGTCGCCGTGGAAACGGACTACTCCTTCCCCTTGGCTGAGAAGGTGAAGGCCTACCTGGCTGATCCCAGCGCCTTCGCTGCCGCAGCTCCTGCCGCTTCGGTTGCTGAGGTCAAATCCGCAGCTCCTGCGGCTAAAGAGGAGGCACCCAAGGAGGAGTCCGAGGAGTCTGATGAAGACATGGGCTTCGGCCTGTTTGATTAAACTGCTGAATGGATATCCATGTCAGACTAACATCAATAAAACATCTGGAAACATC

Function

symbol description
rplp0 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm; nucleus; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including brain; digestive system; eye; otic vesicle; and ovary. Orthologous to several human genes including RPLP0 (ribosomal protein lateral stalk subunit P0).

NR:

description
PREDICTED: 60S acidic ribosomal protein P0-like

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02941 RP-LP0, RPLP0; large subunit ribosomal protein LP0

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238248.1 True 1177 mRNA 0.57 8 31108723 31112733

Neighbor

gene id symbol gene type direction distance location
LOC122344691 NA coding downstream 27458 31074043 ~ 31081265 (-)
rcl1 rcl1,LOC107701854,LOC107655287 coding downstream 44368 31053924 ~ 31064355 (-)
mcc mcc,LOC106565572 coding downstream 56134 30978593 ~ 31052589 (-)
cux2a NA coding downstream 157235 30942514 ~ 30951488 (-)
LOC122344688 LOC107743064,LOC107698017,LOC107734413 coding downstream 166841 30920817 ~ 30941882 (-)
gusb gusb,LOC107719352,LOC107701859,LOC107654306,LOC107734369,LOC104964597,LOC107591494 coding upstream 29844 31142577 ~ 31155113 (-)
ca4a LOC107663683,LOC107654307,LOC107734368,LOC107719346 coding upstream 78430 31191163 ~ 31196967 (-)
LOC122345520 LOC107663881,LOC107725093,LOC107654310,LOC107734346,LOC107563427 coding upstream 257077 31369810 ~ 31454508 (-)
hspb1 LOC107591466,LOC107667824,LOC107725127,LOC107562193,LOC107654311,LOC107734358 coding upstream 385756 31498489 ~ 31503030 (-)
srrm3 srrm3,LOC107591468,LOC107734356,LOC107562180,LOC107725131,LOC107654313 coding upstream 393746 31506479 ~ 31567684 (-)
G40798 NA non-coding downstream 13800 31088192 ~ 31094923 (-)
G40794 NA non-coding downstream 69266 31038405 ~ 31039457 (-)
G40782 NA non-coding downstream 130401 30977609 ~ 30978322 (-)
LOC122344702 NA non-coding downstream 133840 30974318 ~ 30974883 (-)
LOC122344701 NA non-coding downstream 145216 30959444 ~ 30963507 (-)
LOC122344940 NA non-coding upstream 108084 31220817 ~ 31222257 (-)
G40841 NA non-coding upstream 159953 31272686 ~ 31273001 (-)
G40842 NA non-coding upstream 167444 31280177 ~ 31280431 (-)
G40995 NA non-coding upstream 310352 31423085 ~ 31506097 (-)
G40996 NA non-coding upstream 322916 31435649 ~ 31495269 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 282365 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 316004 30789633 ~ 30792719 (-)
G40711 NA other downstream 375363 30631028 ~ 30733360 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 495582 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 1015147 30087966 ~ 30093576 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 218616 31331349 ~ 31350449 (-)
apooa apoo other upstream 589720 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 608537 31721270 ~ 31722906 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 1001163 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 1101298 32214031 ~ 32293782 (-)

Expression


Co-expression Network