CI01000004_15237719_15253901 (COPA)


Basic Information

Item Value
gene id CI01000004_15237719_15253901
gene name COPA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15237719 ~ 15254158 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15237719_15253901.mRNA
GGCTGAGTTTCCACCCGAAACGGCCCTGGATTCTCGCTAGTCTGCACAACGGTGTCATCCAGCTGTGGGACTATCGCATGTGCACTCTTATCGACAAGTTTGACGAGCATGATGGTCCAGTCAGAGGTATTGACTTCCATAAGCAGCAGCCACTGTTTGTGTCAGGAGGAGATGACTACAAGATCAAGGAGTATCCCTGGATCCTGAGTGCCTCAGATGATCAGACCATTCGCATTTGGAACTGGCAGTCCAGAACATGTGTCTGTGTGCTGACGGGGCATAATCACTATGTGATGTGCGCTCAGTTCCATCCCTCTGAGGACCTGGTGGTGTCGGCCAGCTTGGATCAGACTGTGCGCGTGTGGGATATTTCCGGTCTGAGAAAGAAGAACTTGTCTCCGGGTGCTGTGGACACGGAGGTGCGCGGCATCTCTGGTGTCGACCTGTTTGGGGCGTCTGATGCTGTAGTGAAACATGTTCTGGAGGGTCACGATCGAGGCGTAAACTGGGCAGCCTTCCATCCCAGCATGCCTCTCATTGTGTCAGGAGCAGATGACCGCCAGGTCAAGATCTGGAGGATGAACGGTGGTTGTAAGAGTTCATATTTTATTCCTCTCATCTTGTTGAATAAGCTGCCAGTAGTAGTTCAAAAGTCCAAAGCATGGGAGTTGGACACCTGTCGGGGACACTACAACAATGTGTCCTGTGCGGTGTTTCACCCTCGGCAGGAGCTCATCCTGTCCAACTCTGAGGACAAGAGCATCCGTGTGTGGGACATGTCCAAGAGGACAGGCGTCCAGACCTTTCGCAGAGATCACGACCGTTTCTGGGTGCTGGGGGCTCACCCCAACCTCAACCTGTTTGCTGCTGGCCATGACAGTGGGATGCTGGTGTTTAAGCTGGAAAGAGAACGCCCAGCTTACGCCGTGTATGGTAACATGCTGTACTATGTGAAAGATCGCTTCCTGCGTCAGCTCGACTTCAACAGCAGTAAGGACACGGCCGTCATGCAGCTACGCAGTGGATCCAAATTCCCAGTGTTCAGCATGTCCTACAACCCTGCAGAAAATGCTGTGCTGTTGTGCACTAGAGCTACTAACCTGGAAAACAGCACATATGATCTCTACTCCATTCCCAGGGAGAGCGACTCCCAGAATCCTGATGCTCCTGAGGGAAAGCGCTCCTCTGGTCTGACTGCAGTTTGGGTGGCCAGGAACCGGTTTGCCGTACTTGACCGCATGCACTCACTTCTGATTAAGAACCTGAAGAACGAGATTGTGAAGAAGGTCCAGGTGCCAAGCTGTGAGGAGATCTTTTATGCTGGAACTGGGTCGCTGCTGCTGCGTGATGCTGATGGAGTCACGCTGTTTGACGTGCAGCAGAAGCGCTCTCTTGCCACGGTCAAAATTGCTAAAGTCAAATATGTGGTGTGGAGCTCGGATGCCAACCATGTGGCCCTGCTGGCCAAACACGCCATTATGATCTGCAACAAGAAGTTAGAGAGCCTGTGTAACATCCATGAGAACATCAGAGTGAAGAGTGGCGCCTGGGCCGAAAACGAAGTCTTCATCTACACCACCTCCAACCACATCAAATATGCTCTCACCTCTGGCGATCATGGTATAATCCGTACATTGGATCTACCCATCTACGTGACAAGAGTCAGGGGCAACAGTGTGTACTGCCTGGATCGAGAGTGCAGACCACGAGTGCTAACCATTGACCCCACTGAGTACCGTTTTAAACTGGCTCTGGTCAATCGCAAATATGAGGAGGTTCTTCATATGGTGCGTAATGCTAAACTGGTCGGGCAGTCCATCATTGCCTACCTACAGAAGAAAGGCTACCCAGAGGTGGCGCTGCACTTCGTCAAAGATGAGAAGACCCGTTTCAGCCTGGCACTGGAGTGTGGAAACATTGAGGTGGCGCTGGAGGCTGCAAAAGCCCTGGATGAACGAAGCTGCTGGGAGCGCCTCGGCGAGGCTGCACTTCTACAGGGCCATCACCAGGTGGTGGAGATGTGCTACCAGAGAACCAAGAACTTCGACAAGCTCACCTTCCTGTACCTCATCACTGGCAACCTGGCCAAGCTCAGGAAGATGATGAAGATCGCCGAGATACGAAAGGACATGAGTGGACACTATCAAGGTGCTCTTTACCTGGGTGACGTCAGCGAGCGTGTGCGGATCCTGAAGAACTGTGGACAGAAGTCTCTGGCTTACCTGACTGCTGCCACTCATGGGATGGATGAGGAAGCTGAAGCCCTGAAGGAGACCTTTGACCTGGAAAAAGAAATGGTGCCAGAGGTAGACCCCAATGCTCAACTGTTGCAGCCGCCACCTCCCATCAACCCCTTAGACACCAACTGGCCTCTGCTAACCGTCTCCAAGGGCTTCTTCGAGGGAGCCATTGCTGCCAAAGGACGAGCAGGGCAGATGGTTGCTGACCTGGACATGGATGCTCCAGGAGTAGAAGGCTGGGGAGAAGATGCAGAGCTTCATCTGGATGACGATGGATTCATGGATGCTCAAGAGGGACTGGGCGATGACGGAGTTATTGGGAAAGAGGAGGGAGGAGGATGGGAGGTTGAAGAAGATCTGGACCTCCCGCCAGAACTGGATGTACCTTCTGTTGGTGGAGGTGGCGCAGAGGGCGACGGTTTCTTTGTGCCGCCTACCAAGGGCACAAGCCCTACCCAGATGTGGTGCAACAACTCTCAGCTGGCTGTGGATCACATGTTGGCTGGCTCTTTTGAAACTGCTATGAGGTTACTTCATGACCAAGTTGGTGTGGTTCAGTTTGGACCCTATAAGCAGCTGTTCATGCAAACTCTGTCTCGTGGCCGCACCTGTTACCTGGGCCTGCCGTCTCTGCCCTGCTTGCACAGTTACCCCCAGAGGAACTGGAAGGACAGCGGGGCTAAAGGGGGTCTGCCAGCGGTGGGCCTGCGTCTCGCTGATCTCATTTCACGCCTGCAGCAGTGCTATCAGCTGACCACAGCAGGGCGCTTTGAAGATGCGGTCGATCGCTTCAGAGCCATTCTCCTCTCCGTACCACTGCTTGTAGTTGACAACAAACAAGAGATCGCAGAGGCACAGCAGCTGATCACCATCTGTAGGGAGTATATTGTTGGCCTCACCATGGAAACCGAGAGGAAGAAACTTCCTAAAGACACTCTCGATCAACAAAAAAGACTTTGTGAGATGGCAGCATATTTCACACACTGCAGTCTGCAGCCGGTCCACATGGTGTTGGTATTGAGAACAGCTCTCAATCTTTTCTTCAAACTGCGTAACTTCAAAACAGCAGCAGGTTTTGCTCGTCGTCTGCTTGAGCTGGGCCCCAAACCAGAAGTGGCACAACAGACACGAAAGATTCTTGCGGCATGTGAGAAGAGCCTGACAGATGCTCACCAACTGAACTACGACCCCCACAATCCCTTTGACATCTGCGCCGCCTCCTACACTCCCCTTTACCGTGGGCGGCCAGTAGAGAAATGTCCCCTGTCTGGAGCCTGCTACTGCCCCAAATACAAAGGAGAGGTCTGCAGGGTCACACAGGTAACCGAGATTGGTAAAGATGTGATTGGATTGCGCGTCAGCCCACTGCAGTTCCGTTGAACATGCATCGCATAAGCATGGATATGCTTTTCTCTTACATGTACTTTTCCTTTATAAGATGAAGTAATGAAAACTTTGAGATCAGAGAATTCTAGAAAATACCTTATGTGACTAGCCTCCTCCTTTCTATTATATATCTGAGGTCTCTACAGTCTGTATGCTTGCGTTTCATTAATCTAAATAACTAATTGTACATCTGTGACCCTGTCAATCAGTGCAAAACAAGTTTTCTTTCCTGTGAAACTCTAAATATTGAA

Function

symbol description
copa Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axis; hatching gland; mesoderm; notochord; and pectoral fin. Orthologous to human COPA (COPI coat complex subunit alpha).

GO:

id name namespace
GO:0030157 pancreatic juice secretion biological_process

KEGG:

id description
K05236 COPA, RET1; coatomer subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15237719_15253901.mRNA True 3877 mRNA 0.52 28 15237719 15254158

Neighbor

gene id symbol gene type direction distance location
CI01000004_15229290_15233374 PEX19 coding upstream 3122 15228776 ~ 15234597 (+)
CI01000004_15200553_15209521 SLC1A8B coding upstream 27895 15198242 ~ 15209824 (+)
CI01000004_15126731_15131774 NA coding upstream 105481 15126684 ~ 15132238 (+)
CI01000004_15110181_15110483 NA coding upstream 127094 15109598 ~ 15110625 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB coding upstream 140546 15091200 ~ 15097173 (+)
CI01000004_15260416_15262090 APODA.2 coding downstream 6081 15260239 ~ 15262240 (+)
CI01000004_15277204_15286845 SAMD7 coding downstream 23046 15277204 ~ 15286987 (+)
CI01000004_15291659_15296777 NA coding downstream 37501 15291659 ~ 15297847 (+)
CI01000004_15316323_15317231 NA coding downstream 61789 15315947 ~ 15317342 (+)
CI01000004_15325044_15326740 NA coding downstream 70886 15325044 ~ 15326787 (+)
G34055 NA non-coding upstream 1336 15236130 ~ 15236383 (+)
G33896 NA non-coding upstream 13805 15223661 ~ 15223914 (+)
G34032 NA non-coding upstream 77659 15106736 ~ 15160060 (+)
G34031 NA non-coding upstream 131020 15106422 ~ 15106699 (+)
G34028 NA non-coding upstream 133551 15103966 ~ 15104168 (+)
G34061 NA non-coding downstream 17486 15271644 ~ 15271905 (+)
G33857 NA non-coding downstream 165103 15419261 ~ 15425806 (+)
G34090 NA non-coding downstream 179010 15433168 ~ 15433373 (+)
G34100 NA non-coding downstream 227105 15481263 ~ 15481530 (+)
G34101 NA non-coding downstream 227762 15481920 ~ 15482315 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1200819 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2582008 12646838 ~ 12652570 (+)
G31865 NA other upstream 3042572 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3570060 11666900 ~ 11667659 (+)
G34220 NA other downstream 685199 15939357 ~ 15939950 (+)
G33815 NA other downstream 809257 16063415 ~ 16066464 (+)
G34400 NA other downstream 1723170 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location