LOC122344715 (vps37b,LOC107673398,LOC107594993,LOC107656485,LOC107587312,LOC107709855,LOC107721558)


Basic Information

Item Value
gene id LOC122344715
gene name vps37b,LOC107673398,LOC107594993,LOC107656485,LOC107587312,LOC107709855,LOC107721558
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16413057 ~ 16416005 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238264.1
ATGGCTAAAGCCAAAAGTTGTCGGCACTATGCTGTAGAAAAGCAGTATTTTATTGTCACAATTTTTTCAATTATAACACTTTCTGCCTTTTTGTTCTGTCCCCTCACAGACGACAGATCTGGAAACACTCCCTTAGACACACTCCTCGCACTCCTACAGGCAGAAGGAGCCAAAATCGAGGAAGAAACTGAGAACATGGCTGATTCACTCCTCGATGGTGCTTTCCCCCTGGACACATTTATCGACGAGTATCAGAGTAAAAGGAAGCTGGCGCACATACGCAGAGTCAAGATAGAGAAGCTCCAAGAATTGGTGCTGAAGGGACACCACATGGCCCCAGCTGCTCCTCAGGCCTCTCGTGCTCAGGACCTTCCCTCCAGGCCAGCAGCTCTCCATAGAGAGGTCAATGGTTCCCCCATGCCGATGCCCCGGCGGGCTCCTCCTCTTCCCCCAATTAAAGTCCCCCATACTCCTCCTGCTCAGCCCCCCGCAGCCGTCTCTTACCCTCCTACTTCTCCGTTCGCTGCGGCCTCTCCATTCCCTCCCACTTCTCCATACCCCCCGATTCCCCCTAGAGTAGGAAACACACCACCCGTTCTTAACCAGGGATACCCCAGCATGTACATGCAGCAATACGCCCCAGCTGTGCCCCAGAGAGCCCCTCCACGCATGGCACCCCAGCCAGGCTTCATCATGCAGTGAGCAAAGAACATTACGTtctatggagaaaaaaaacgaaatgcaCACTGGACATTCATTTAAGCCTTTTGTAGGTCCTTCAAGCTGCACGTTATTAAATATTGTGCGCCGAGATGAAGTCTTGTCAAGTGTAAAATTAACAAGGCTTTACTGCAATCAAAGGGGCATCTGCAACAGGATCTTCAATTTGCACTTTAGACTACTTTTGTATTTGATCGGTCATGGCTGGTTATGGAGTCATGCTGTTTCCGTTCTGCCCTTCTCAGTAGTGTTAGTTCAAGTAAAAAAATTCACATGAGCCTCAGGGGCCTCCATGCGTAATGAAGACATCAAAGTTCAAGAACAGGCGTTCTGTTAGGCCATCTAGACAGATACGAAGAGCTatgatttgatgttttaatcTGAGTTGTCAAGTTCATGCTAATTTGTCAGGTCAACCACTTTAATATCTTCTGGCATTTCATGCCTGAAAAAGCTGCTTTAACAAAACAGTAAAGCCTATGCAAACAGACTGAGACCGAACTGTGTTTTTTGGGAGGGGGAGCAAACCATTTTTGCTCTTTAGGTCTTCTCAGACCTGCAGTCAAAGATgcgatttgttttttttccagtgaatCCTGTTAGCAAAACAGAGCTTAAATGCGGATGAAGTCATTCGGTACTGATGTGGTGGATGGGATCAGAGCTACCGCTATAACTGAGAGAGCCTTATGTCTCAGATACAAGTTCGCACTGGAAGCAGCTTATTGGCTAGAATTTGAAAGGAGTGCGAGTAAATTGTAGTATGTGTTGGGGgaaaaaagtgcaaatgagTTGTTTTAGGATTAAGCGTTAACATTTGTGAAGCATACGTGCTTGCAATGTCATTACCATGCGTACTTAAACTGACGTTGATGCATAATTTACCATCTTAATGTTTGTAACTAACACCATAATCCTCCTCGTGTTTATTTTTGCCATCTGGTGTGAAGATGTTCATTGGAGATGCGCTTCCTTTCCATAAGCCCCACatattaattgatatttaatatatataaactaatatagCCAAACTATTTAACCCATAATCTGACTTGCCTACACCATCAGGTCTGTTACATATCATATCTTGGTTACTGTCCTCAATATTGTAGTATAACCTTCTTTCATGCCTTTTGTTTTCACCCTGCAACTGTTTTCACTATGTACGTTCTGGTTTCTTCATGTGTTTGCCGCTGAAAAAGCCACTTTGTGCCTAAGCTGGGTATTAAGATGAAGACTTGTTCACTGTGtcgaggagtgtgtgtgtgtgtgtgttcgtattTCTCCTCACCTTCCCGTTCTAAAGCAGATTTCTGTGACGATTAGACATTTCTTTTACAACATATATGCTGTTTACGCAGGTACATCTTTACAAGTGCTCTTTTCCTAAATATCCATTGTATTTACTCGACCGGTTAGAGCCATCATTACTTTGCCTCAGATTCAGGAAGCTGACATGATAGAAATGTTGTTTGGATGAAGTCCTCTCTTTAATCACCGGTGCTACTACATTCATTTAATGAGCTGAACCGAGATGATGTTAGTACGCAGGCTCTGTTTGAATTAAATCACTCTGTTTGTCAGGCTCGGGTTTGGTATCTGCTTTACGTCAATGCTGATGAGCACCAGATCGAGAGGTGGAATTATTTGAGTTCCTCGTGAATCAGGCTGCATTATGTCTAGACATTGGTTAAATACCTGTGAAAACCTTTATGTACTATGACAGGATTGCCAACCATCTGGAAAAACCAGCATCCACCcttaaaaactgtttgtttgtttgtgtataaacatgttctttctttgtcttaaaaataatgaatgctaGGTTTGTAAAAGGTAACTCGGCTGTATGCTTTTGCTGGCAGTAAAATAGTGTTTTATACTTTCCTCATGTAAAATATGGAGACTTAAGTGCTAGGTAATGTCTGTTCAAAGTTGGTAGACATGGTATGAAACTGACATCTCcattttaaagataataaatgatatccCATCGCTTTTCTGTGA

Function

symbol description
vps37b Enables calcium-dependent protein binding activity. Involved in positive regulation of viral budding via host ESCRT complex and positive regulation of viral release from host cell. Located in endosome membrane; midbody; and plasma membrane. Part of ESCRT I complex.

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 37B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238264.1 True 2730 mRNA 0.43 3 16413057 16416005

Neighbor

gene id symbol gene type direction distance location
si:ch211-204c21.1 LOC107746847,LOC107561610,LOC107680600,LOC107719926,LOC107660265,LOC107553608 coding downstream 274894 16115390 ~ 16138163 (-)
LOC122346134 LOC107681310 coding downstream 298633 16095748 ~ 16114424 (-)
mccc2 mccc2,LOC107746845,LOC107680610,LOC107552565,LOC107660263,LOC107553609,LOC107719925 coding downstream 317720 16089065 ~ 16095337 (-)
smn1 smn1,LOC107660268,LOC107553605,LOC107719932,LOC107681471,LOC107746843,LOC107552536 coding downstream 325647 16084818 ~ 16087410 (-)
rtkna rtkn,si:dkey-40c11.1,LOC107676668,LOC107746864,LOC107681349,LOC107718341 coding downstream 346196 16014786 ~ 16066861 (-)
LOC122344899 LOC107663257,LOC107742022,LOC107570120 coding upstream 842461 17258466 ~ 17259947 (-)
LOC122345238 cfap157,LOC107587652,LOC107672550,LOC107731015 coding upstream 900376 17316381 ~ 17321058 (-)
LOC122344736 apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 coding upstream 913191 17329196 ~ 17345615 (-)
LOC122345546 LOC107699749,LOC107587493,LOC107756319,LOC107703272,LOC107567144,LOC107720200 coding upstream 938924 17354929 ~ 17359741 (-)
LOC122344712 ckmt2b,ckmt2,LOC107720280 coding upstream 966026 17382031 ~ 17384148 (-)
G37212 NA non-coding downstream 80980 16330931 ~ 16332077 (-)
G37092 NA non-coding downstream 434317 15894684 ~ 15978740 (-)
G37098 NA non-coding downstream 474221 15938120 ~ 15938836 (-)
G37093 aqp3a,LOC107552570,LOC107746837,LOC107680708,LOC107553599 non-coding downstream 502184 15906283 ~ 15910873 (-)
G37058 LOC107718333,LOC107746835,LOC107552574,LOC107680737,LOC107676661 non-coding downstream 547897 15861077 ~ 15865160 (-)
G37247 NA non-coding upstream 20464 16436469 ~ 16443757 (-)
G37249 NA non-coding upstream 58703 16474708 ~ 16485114 (-)
G37255 NA non-coding upstream 61814 16477819 ~ 16554560 (-)
G37248 ncor2,LOC107687981,LOC107742750,LOC107566019,LOC107684513 non-coding upstream 77358 16493363 ~ 16494405 (-)
G37266 NA non-coding upstream 255747 16671752 ~ 16672934 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 34542 16376266 ~ 16378515 (-)
LOC122344710 LOC107755722,LOC107681456,LOC107700059,LOC107553585,LOC107727439 other downstream 156065 16253952 ~ 16256992 (-)
cxcl20 NA other downstream 553722 15857240 ~ 15859335 (-)
cxcl11.1 LOC107680787,LOC107552555,LOC107718351,LOC107553572,LOC107676630 other downstream 557249 15854920 ~ 15855808 (-)
LOC122345695 LOC107718358,LOC107553579,LOC107676641,LOC107680767,LOC107746876 other downstream 566021 15846036 ~ 15847036 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other upstream 180850 16596855 ~ 16633121 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other upstream 271255 16687260 ~ 16713167 (-)
LOC122345693 NA other upstream 371804 16787809 ~ 16859931 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other upstream 930464 17346469 ~ 17350380 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 2759458 19175463 ~ 19183978 (-)

Expression


Co-expression Network