ptrh1 (ptrh1)


Basic Information

Item Value
gene id ptrh1
gene name ptrh1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20058275 ~ 20061197 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238273.1
AATCTCCCATTGCCTTTCAACAGCCTGGATCGGAGAAAGCATGGGGTCCTACTGAAACGCAAATCCAATCGACTACAAAACGTCTTTATGTCAATACATATGCCCGCTAAATATACGTTTCGGTTGCTGTGCTTTGTAGTTACGATTATTCCGTGATATAAATGTCCACCGTTCGAGATCTGTCTGATGAAAGTCCTTTCGAAACCGTGTAACAGGCCGGTATCGTGAAGTTTAAAGTCAGCATGACTCATAATGAGTAACACGTTACGAGGTAAAGTCTGGGCTTCTGTGACACAAGCGTTCAAACAGCCGATGGCTCTCATAAGACGAATGATAACAAAGCTGCTCCATCGAGTGTTGATGAGCTCGCTGCCGTCACCGAAGATGATGATGACCGGTCAAACCACAGCCGACTGGACCAGAAGCAAAATGGTTGTGGGGCTGGGAAACCCTGGCATGAATGGCTCTCGACATAGTGTTGGGATGGCTGCGCTCGCAGCGTTGGCTGAACGTTTGGGAGTTACAGACAGCTGGAGATCTGACCGGCAGGTTTCAGGGGAAGTCATTGTGACACAGCTTCAAGATATCAAGCTGATTCTCCTTCGACCCAAGCTGCTCATGAATGTGAATGGTGTGAGTGTGGCAAAAGCAGccagcaaatatttaatttcacccGAACATATTCTCCTGATTCATGATGAGCTTGACAAACCACTTGGAAAGTTCGGTATTAAACATGGTGGAAGTGCAAGGGGTCACAATGGTGTAAGGTCATGTGTGGACTGCCTTCAGACTGATGTGATGCAGCGGTTGCGTATTGGTATCGGCCGACCATCGGGAAAAACGCCGGTTGACCGCTATGTTTTGGGACGGTTTTCACAAGAGGAACAAAATGTTCTAGACCCCGTCCTGAAGCAGAGTGTTGACGTTCTGCTGACATGCATCACAGAATCCCAGTCCCAGACTTCTCCAGCAGAGGGAAGAAGAGCGTCACGCAGGAACAAAGCCAGGACTCTTTCACCTCCTCAGGACACCACAGAAGAGCAGAAACAGAGCTGACCTACACTTGAGATGTTTGATAACTGCGTTTCTTTTCTGAAGGAGTAGAGTTTTGTGATGCTGTGCTTAGATCCCCAGAAGAGGGAAGGACACTGTTTTtcataaaagacattaaaataaaatagtaatttttgaTAACTCTGTACTGAAAGCTTTGTTTGGTCTATGTCAGATTTTGAAGTTGAGCCTATTGGGAGGCAGCAGCTTGCAGTTTGTGGTATATTAtactaaacaaatatatataacattgaCAAATTTGGGGGGAAATGCAGAAGAttcaataaattagaaatacCAATGCAGTGTTTAAgcaaacatttataatgcttgACAACAATTATAAGTAAATATCAGAAACTTGAAcatgtgagaaaaaaatgagAGGTTACATCACATCATGTTACATTAAATATCAGTGTTTTTCAGAAGCGCCTGTTTAAAACCTGGACAAGACTGAGCTCActataattatcatttattgAGTCATTTCATGTGATTTGGTGTGTTCATAAGTTCATACGTTTTTCTTATGATGTTCAAGATAGCTCTGTTACTTCACAAATGTGTGCTTGAATGAGAATGCACCAGAAATATGTTGTTAAATTAGCTTTTGTTCATCCTTTTTGGATCGAAGTTTAAatctacaacaaaaaaaaaaaggggtttaaaataaatatgacgaaaataaatatttcagattctAGGTAACAAGTAAATTATATAGTTGATCATGTGGCTCTTTATACAGACATCTAGATGATCTTCAGTTGAAGCTCAAGATGTTCTTTGGATCATCTCAAACCATGCCTGAGTTCATGTGGGTCAAGTGCTGTTGTCATCAAAGCAAAACAggcaaatttaattacattttatccaCTCAAATAAATCGCTTATAACTTGCAATATGCTTTATGAAATTAGAAAAATTCTAAAAAGCGTTTTGCACCCCTTTatgtcattattataaatatgtataacaCACATTTTGCTGTGGCCCAACAACATGAACAAATGTTTGGAAAGTA

Function

symbol description
ptrh1 Predicted to enable aminoacyl-tRNA hydrolase activity. Orthologous to human PTRH1 (peptidyl-tRNA hydrolase 1 homolog).

NR:

description
probable peptidyl-tRNA hydrolase isoform X1

GO:

id name namespace
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function

KEGG:

id description
K01056 PTH1, pth, spoVC; peptidyl-tRNA hydrolase, PTH1 family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238273.1 True 2084 mRNA 0.40 5 20058275 20061197

Neighbor

gene id symbol gene type direction distance location
cfap157 cfap157,LOC107587652,LOC107672550,LOC107731015 coding downstream 18106 20035492 ~ 20040169 (-)
LOC122345820 LOC107720235,LOC107699702,LOC107587551,LOC107756287,LOC107567124 coding downstream 295167 19759722 ~ 19763108 (-)
mymk tmem8c,LOC107587553,LOC107699700,LOC107672546,LOC107720238,LOC107756286,LOC107567143 coding downstream 317998 19738248 ~ 19740277 (-)
slc2a8 slc2a8,LOC107720220,LOC107699761,LOC107756328,LOC107672579 coding downstream 331719 19721746 ~ 19726556 (-)
lcn15 LOC107567131,LOC107756329,LOC107672532 coding downstream 338939 19715931 ~ 19719336 (-)
pmpca pmpca,LOC107672556,LOC107699775,LOC107731046 coding upstream 10085 20071282 ~ 20075708 (-)
ptgs1 ptgs1,LOC107720239,LOC107699776,LOC107672577,LOC107587657,LOC107731054,LOC108255976 coding upstream 34272 20095469 ~ 20109238 (-)
zgc:101858 zgc:101858,LOC107740831,LOC107699707,LOC107552635,LOC103359842 coding upstream 66690 20127887 ~ 20130221 (-)
ppil3 ppil3 coding upstream 69262 20130459 ~ 20131947 (-)
lrrc8ab lrrc8ab,LOC107699779,LOC107552633,LOC107740800,LOC107731052,LOC107587658,LOC107672572,LOC108423682 coding upstream 70987 20132184 ~ 20138436 (-)
G38019 NA non-coding downstream 101613 19956428 ~ 19956662 (-)
G37928 NA non-coding downstream 354590 19703420 ~ 19703685 (-)
G37926 NA non-coding downstream 355932 19702069 ~ 19702343 (-)
G37877 NA non-coding downstream 547993 19505921 ~ 19510282 (-)
G37801 NA non-coding downstream 771427 19286627 ~ 19286848 (-)
G38147 NA non-coding upstream 94584 20155781 ~ 20160794 (-)
G38156 NA non-coding upstream 215471 20276668 ~ 20279101 (-)
G38158 NA non-coding upstream 223426 20284623 ~ 20286229 (-)
G38161 NA non-coding upstream 236111 20297308 ~ 20677930 (-)
LOC122345854 NA non-coding upstream 597897 20659094 ~ 20659471 (-)
G38058 NA other downstream 2477 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 122699 19865019 ~ 19935576 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 874297 19175463 ~ 19183978 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 2707895 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 3198344 16787809 ~ 16859931 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 64392 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 333534 20394731 ~ 20396734 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 844846 20906043 ~ 20936097 (-)
G38359 NA other upstream 1303041 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 1551491 21612688 ~ 21619583 (-)

Expression


Co-expression Network