ruvbl2 (ruvbl2,LOC107664527,LOC107677411,LOC107597476,LOC107587476,LOC107722783)


Basic Information

Item Value
gene id ruvbl2
gene name ruvbl2,LOC107664527,LOC107677411,LOC107597476,LOC107587476,LOC107722783
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8102585 ~ 8108024 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238275.1
TGTTCCGCCCGGACGGATTTCCACCGCGCACCCATTCAGATACAACCGCCTTACGAGAGAACATGGCAGCGCAGGTGGCAGCCACGAAAGTCCCGGAGGTGCGAGACATTACTCGAATTGAGAGGATTGGCGCACACTCTCACATTCGTGGCCTTGGGTTAGATGATGCCTTGGAGCCACGGCAGGTGTCTCAGGGGATGGTGGGCCAGCTGGCGTCTCGAAGGGCAGCCGGTCTGATCCTTGAAATGATCAAAGATGGTCAGATCGCTGGTCGTGCTGTCCTCATTGCTGGCCAACCCGGGACTGGCAAGACGGCTATTGCTATGGgtatTGCCCAGTCTCTTGGCCCTGACACACCTTTCACTGCTCTTGCTGGGAGTGAGATTTTCTCTCTGGAGATGAGCAAGACCGAAGCTCTGAGCCAGGCCTTCCGCAAAGCCATAGGAGTCAGGATAAAAGAAGAGACTGAGATCATTGAAGGAGAGGTGGTAGAGATTCAGATCGACAGACCTGCTACAGGAACTGGTGTAAAAGTGGGCAAGCTCACGCTGAAGACGACAGAGATGGAAACCATCTATGATCTGGGGACCAAGATGATTGAGAGCCTCAGTAAAGAGAGAGTACAAGCTGGAGATGTGATCACCATCGATAAAGCCACAGGGAAGATTAGCAAACTGGGAAGGTCATTTACTCGAGCAAGAGATTATGACGCCATGGGTGCACAGaCACAGTTTGTTCAGTGTCCAGAGGGAGAACTGCAGAAACGGAAGGAGGTCGTTCACACCGTTTCTCTTCACGAAATTGACGTCATTAACAGCCGCACTCAGGGATTCCTGGCCTTATTTTCAGGGGACACAGGAGAGATTAAGTCAGAGGTTCGAGAGCAGATCAATGCTAAGGTGTCTGAATGGAGAGAGGAAGGCAAAGCTGAGATCATTCCTGGGGTTCTTTTTATAGATGAGGTCCATATGTTGGACATAGAATGCTTTTCGTTCCTGAATCGAGCTCTTGAGAGCGATCTATCCCCTGTACTCATCATGGCTACTAACCGAGGCATCACCCgtattagAGGCACCAATTACCAGAGTCCTCATGGTATTCCCATAGACATGCTTGACCGTCTGCTCATCATTGCAACCTCCCCCTATACTGAGAAAGAGACTAGACAGATCCTGAAGATTCGCTGTGAGGAGGAAGATGTCGAGCTGAGCGAGGAGGCGCACACAGTTTTAACACGTATTGGACAGGAGACTTCACTCCGTTATGCTATCCAGCTCATCAGTACTGCAGGCCTGGTGTGCCGCAAACGCCGGGGCACTGAGGTCCAAGTAGAGGACATTAAGAGGGTCTACTCTCTCTTCTTGGATGAGTCCAGATCCTCACAGTACATGAAAGAATACCAGGACTCCTTCCTCTTCAATGAAACACaatccTCTCAGATGGacacttcataataaaaaaaaaaaagctgtgaagTGTCTCCATTCATTGCTCCTGTGAAGTCCATTTTCTCTTACAACCTTGTCTCTTAGAATTGTTCAGGCAGTTGAGTGTTCATGTACTCAAGctttgtcatcattttctttatttgctaCTTGGTATTGCTAGGTTTTATATGTTTtgcattgaataaaaaaaagaatttcttcttttttggcTGTATAACATGGCAAccaaaagatgaaataaaactatttgacCATAAACTGA

Function

symbol description
ruvbl2 Enables ATP hydrolysis activity. Acts upstream of or within several processes, including cilium assembly; epithelial cilium movement involved in extracellular fluid movement; and regulation of heart growth. Predicted to be located in dynein axonemal particle and nucleus. Predicted to be part of R2TP complex and nuclear lumen. Is expressed in central nervous system; neural tube; posterior lateral line; and pronephric duct. Orthologous to human RUVBL2 (RuvB like AAA ATPase 2).

NR:

description
PREDICTED: ruvB-like 2

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0003351 epithelial cilium movement involved in extracellular fluid movement biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0044458 motile cilium assembly biological_process
GO:0060420 regulation of heart growth biological_process
GO:0048565 digestive tract development biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006281 DNA repair biological_process
GO:0071339 MLL1 complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K11338 RUVBL2, RVB2, INO80J; RuvB-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238275.1 True 1710 mRNA 0.48 15 8102585 8108024

Neighbor

gene id symbol gene type direction distance location
ube2g1a ube2g1a,UBE2G1,ube2g1,LOC107597432 coding downstream 102591 7993298 ~ 7999994 (-)
ankfy1 ankfy1,LOC107597410,LOC107664513,LOC107587357,LOC107664399 coding downstream 110055 7976647 ~ 7992530 (-)
zzef1 zzef1,LOC107712353,LOC107748500,LOC107664397,LOC107598082,LOC107664510 coding downstream 129024 7938171 ~ 7973561 (-)
atp2a3 atp2a3,LOC107597397,LOC107664518,LOC107712375,LOC107587360,LOC107748501,LOC107664409 coding downstream 190611 7865137 ~ 7911974 (-)
camkk1a camkk1a,camkk1,LOC107587369,LOC107664416,LOC107712376,LOC107664519 coding downstream 272820 7794750 ~ 7829765 (-)
ftr83 ftr83,LOC107664511,LOC107712363,LOC107587475,LOC107722782,LOC107677412,LOC108429748 coding upstream 691 8108715 ~ 8114097 (-)
atp5l atp5l,LOC107664523,LOC107597515,LOC107587353,LOC107722787,LOC107677432 coding upstream 21097 8129121 ~ 8131172 (-)
pdzd3b LOC107598091,LOC107722765,LOC107677407,LOC107587439,LOC107664508 coding upstream 23493 8131517 ~ 8136607 (-)
abcg4a abcg4a,abcg4,LOC107717882,LOC107722792,LOC107677424,LOC107587350,LOC108429752 coding upstream 30084 8138108 ~ 8154780 (-)
LOC122345805 hinfp,LOC107677425 coding upstream 56147 8164171 ~ 8170627 (-)
G34290 NA non-coding downstream 1885 8100486 ~ 8100700 (-)
G34276 NA non-coding downstream 88648 8013686 ~ 8013937 (-)
G34275 NA non-coding downstream 89034 8013347 ~ 8013551 (-)
G34265 NA non-coding downstream 165214 7936511 ~ 7937371 (-)
G34260 NA non-coding downstream 240756 7861475 ~ 7861829 (-)
G34314 NA non-coding upstream 89444 8197468 ~ 8260129 (-)
G34310 LOC107722772,LOC107587343,LOC107717878,LOC107597552 non-coding upstream 91206 8199230 ~ 8200082 (-)
G34309 NA non-coding upstream 108939 8216963 ~ 8218476 (-)
G34315 NA non-coding upstream 147835 8255859 ~ 8262919 (-)
G34332 atf5a,LOC107717872,LOC107722784,LOC107587340,LOC107597628,LOC107677421 non-coding upstream 159069 8267093 ~ 8270648 (-)
si:dkey-220k22.3 NA other downstream 380827 7718565 ~ 7721758 (-)
LOC122345606 LOC107712378 other downstream 390761 7706970 ~ 7711824 (-)
G33998 LOC108444092 other downstream 705432 7382346 ~ 7397153 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 1159382 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 1276403 6824171 ~ 6826182 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 52853 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 303858 8411882 ~ 8414806 (-)
timm8b timm8b,LOC107717885,LOC107598437 other upstream 321676 8429700 ~ 8431586 (-)
LOC122345093 NA other upstream 566205 8674229 ~ 8677718 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other upstream 821446 8929470 ~ 8930053 (-)

Expression


Co-expression Network