LOC122344732 (LOC107570126,LOC107742021,LOC107694705,LOC107675326,LOC107715436,LOC107574130)


Basic Information

Item Value
gene id LOC122344732
gene name LOC107570126,LOC107742021,LOC107694705,LOC107675326,LOC107715436,LOC107574130
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17229394 ~ 17253899 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238282.1
ATGATCTCTGCCAGATTTCTGAGTGGATTCTGTGGATTTTCATCTTcatcttgtGTTGTGGGACCGAGGGGTCCGTCCGGTCCTATGGGACCTCCAGGAGAACAAGGGCCCCGAGGAGACCGAGGAGACAAGGGGGAGAAGGGAAGTCCGGGACCCCGTGGAAGAGATGGTGAGCCGGGGACCCCTGGAAACCCTGGACCCCCTGGACCGCCAGGGCCGAACGGACCTCCAGGCCTCGGAGGAAACTTTGCTGCTCAGATGGCTGGTGGATTTGATGACAAAGCTGGAGGAGCACAGATGGGAGTGATGCAAGGACCGATGGGTCCGATGGGTCCTCGAGGACCGCCAGGCCCCAACGGATCTCCTGGCCCGCAAGGATTTCAAGGAAACCCTGGAGAAGCCGGAGAGCCCGGATCATCCGGCCCAATGGGTCCTCGTGGCCCCCCGGGTCCCTCAGGAAAACCAGGAGATGATGGAGAAGCAGGCAAGCCTGGGAAAGCTGGTGATCGTGGACCCTCTGGGCCTCAGGGATCTCGTGGATTCCCAGGAACACCAGGTCTACCTGGAATAAAGGGACACAGAGGTTATTCAGGTCTGGATGGAGCTAAAGGAGAGGCCGGAGCCACTGGAGCTAAAgGGGAGTCTGGGTCTTCTGGTGAAAGTGGAGCTCCTGGACCGATGgGTCCTCGTGGTTTACCTGGTGAACGAGGACGTCCAGGACCATCTGGAGCTTCTGGTGCTCGAGGGAACGATGGAGCTCCTGGAGCTGCTGGTCCTCCTGGTCCGGTCGGAACGGCTGGAGCTCCAGGCTTCCCAGGATCCCCCGGTTCTAAGGGTGAAGCAGGACCTACCGGAGCCAGAGGACCTGAAGGAGCACAAGGACCCCGCGGAGAGTCAGGTGTCCCCGGATCCTCAGGACCTTCTGGAATTTCTGGAAACCCCGGGACTGATGGGAATCCTGGAGCTAAAGGATCAGTGGGTGCTCCTGGTATCGCTGGGGCTCCTGGTTTCCCAGGCCCTCGGGGCCCTCCTGGACCTCAGGGAGCGACTGGACCTCTGGGGCCCAAGGGACAGTCTggTGACACGGGTCTCGCAGGCTTCAAGGGTGAGGCTGGACCTAAAGGAgaaattGGCAACGCTGGGCCTCAAGGGGCCCCTGGCCCCGGTGGAGAAGAAGGAAAGCGAGGACCCAGAGGAGAGCCTGGCGCTCTTGGACCCGTCGGGCCGGCCGGAGAGAGAGGAGCTCCTGGTAACCGAGGTTTTCCTGGACAAGATGGTCTGGCTGGACCAAAGGGTGCTCCGGGCGAGCGGGGATCTTCAGGAGTGTCGGGACCTAAGGGAGCCAGTGGAGATCCGGGCCGGCCTGGTGAACCGGGTCTGCCTGGTGCACGGGGTCTGACGGGACGCCCGGGTGATGCCGGTCCACAGGGGAAAGTTGGTCCTTCTGGTGCTGCTGGTGAAGACGGCCGTCCGGGCCCCCCGGGGCCTCAGGGTGCTCGCGGTCAGCCGGGAGTCATGGGATTCCCTGGACCCAAGGGAGGCAATGGTGAAGCTGGGAAGTCTGGAGAGAAGGGCCTTGCTGGAGCTCCGGGTCTGCGTGGTCTGCCTGGGAAAGATGGAGAGACGGGTGCTGCTGGACCTCCTGGACCCGCTGGTCctgcaggagagagaggagagcaggGTCAGCCTGGACCGTCCGGCTTCCAGGGTCTTCCCGGACCCCCAGGGCCCCCCGGTGAGGGCGGTAAACCTGGAGATCAGGGTGTTCCTGGAGAGGCAGGGGCCGGAGGGGCCACCGGACCACGCGGTGAACGGGGTTTCCccggagagagaggaggagtgGGGCCCCAGGGCCTCCAGGGGCCTCGAGGTCTTCCAGGAACTCCAGGAACTGATGGGCCCAAGGGTGGCGTGGGCCCGGCGGGAACTCCTGGTGCTCAGGGGCCTCCGGGACTGCAGGGGATGCCTGGAGAGAGAGGTGCGTCCGGCATTCCTGGACCAAAGGGAGACCGAGGTGACAACGGTGATAAAGGACCTGAAGGAGCTCCTGGGAAAGACGGCGCAAGAGGTTTAACGGGTCCAATCGGTCCTACTGGTCCTGGGGGACCCAATGGTgaaaagGGAGAGTCTGGACCTGCTGGACCGTCTGGAGCTGCTGGTACTCGCGGTGTTCCTGGTGACAGAGGAGAGACTGGTCCTCCTGGTCCTGCTGGATTTGCTGGTCCTCCTGGTGCAGATGGGCAGCCGGGGGCTAAGGGAGAGCAGGGTGAAGGTGGACAGAAGGGTGATGCTGGTGCACCGGGCCCTCAGGGGCCTTCTGGAGCTCCAGGTCCTCAGGGACCAACTGGTGTGTCTGGACCAAAAGGGGCTCGCGGTGCTCAAGGACCTCCTggTGCCACAGGTTTCCCTGGAGCTGCTGGTAGAGTTGGACCTCCTGGTCCCAATGGAAACCCGGGTCCGGCTGGTCCTGCTGGTCCTCCTGGTAAAGATGGTCCTAAGGGTGTGCGTGGAGACGGTGGTCCTCCTGGAAGACCTGGGGATGCTGGCTTGCGTGGGGCGGCTGGGACTCCTGGAGAGAAGGGAGATCCTGGAGAGGATGGGCCTCCTGGTCCAGATGGGCCTGCTGGTCCTCAGGGTCTGGCTGGTCAGCGTGGTATTGTTGGACTTCCAGGACAGCGTGGTGAAAGAGGTTTTCCCGGCCTGCCTGGACCCTCTGGTGAGCCTGGTAAACAAGGAGCTCCTGGAGGACCTGGAGACCGTGGACCCCCTGGACCTGTGGGACCGCCTGGTCTGACAGGACCCGCTGGGGAACCTGGGAGAGAGgGCAATCCTGGATCTGATGGTCCTCCTGGCCGAGATGGTTCTGCAGGAATAAAGGGTGACCGAGGAGACACTGGATCCGCGGGCGCTCCTGGTGCTCCGGGCGGCACTGGTGCTCCTGGTCCGGTCGGACCCACCGGTAAACAGGGAGACCGAGGAGAGGCTGGACCCAAAGGACCTGCTGGAGCTCCTGGGCCTGCTGGAGCTCGGGGAATGCCTGGACCACAAGGCCCACGTGGAGATAAGGGAGAGGCTGGCGATTCGGGTGAGAGAGGGCAGAAAGGACACCGAGGATTCACTGGTCTTCAGGGGCTGCCTGGGCCTCCTGGCCAACCTGGTGACCAAGGAGCTTCTGGACCTGCTGGACCCGGTGGAGCAAGAGGACCCCCAGGCCCCGTTGGTCCAGCTGGAAAAGACGGATCAAATGGTTTGCCTGGCCCCATCGGACCACCCGGACCTCGCGGTCGTTCTGGAGAGACTGGGCCATCCGGCCCCCCAGGGAATCCTGGCCCCCCTGGTCCTCCTGGCCCCCCAGGGCCCGGCATCGACATGTCTGCTTTCGCTGGTCTGTCTCATCCTGAGAAGGGTCCTGACCCCCTGCGGTACATGAGGGCAGACCAGGCTGCTGAAGGTGACCGCCAGAACGATGCAGAGGTGGATGCCACTCTGAAATCCCTAAACAACCAGATGGAGAACATCCGCAGTCCTGATGGCACTAAGAAGAGCCCGGCCCGGACCTGCAGAGACCTGAAGCTCTGCCACCCTGACTGGAAGAGCGGTGAATACTGGATTGATCCTAACCAGGGCTGCACCGTTGATGCCATGAAGGTCTTCTGCAACATGGATACTGGCGAGACCTGTGTTTATCCAAAACCCACTAATATCCCACGCAAGAGCTGGTGGACTTCCAAGGGTGCGGAACGCAAGCACGTTTGGTTCGGAGAAGCCATGAATGGTGGATTCCATTTTGGCTATGGAGACGACAATCTGGCACCTAATACAGCAAGCATTCAGATGACTTTCCTGAGACTGCTGTCCACCGAGGCCTCTCAGAACCTCACCTACCACTGCAAGAACAGCATTGCCTACATGGACGAGGCCACCGGAAATCTGAAAAAAGCTCTGTTGCTGCAGGGGTCCAATGATGTGGAGATCCGTGCGGAGGGCAACAGCCGCTTCACATACAGTGTTCTTGAGGATGGCTGCAAGaaacacacaggcCAGTGGAGCAAGACAGTCATCGAGTACAGATCACAGAAGACTTCACGCCTGCCCATTGTGGACATTGCCCCTATGGATATTGGAGGAGCTCATCAGGAGTTTGGAGTGGATGTGGGTGCTGTCTGTTTCCTGTAAAGATAGAGGAACAAATTAAACCGGGATACAGAAAAGAAACGAGAGCGATAACACACACTCGAGAGCGAGGAactaagaaagagagaaatgaaagaaCTTGACATTCTTAAGTGGAACATCTTTATgactagaaaaaaaagaagtgcttCCGAAAGTATTTTTAGGAAATGCACTGATAGGCACTAGCAGTACTCATCTGTGACTGACCTGCCATTCCCTGATGGGCAGACAGCGTCTCGACCCTCGGCATTCTGGGAACATCTCACAACACAACCCAACGCTATATAAGGGAGCATGCCAGAGAAAACCACAGAAGTAGAagtgtgttttggttttatttatttattgttaaggTGCTATTTCCCCCTGTGCATTTGAATCAAGAGTTGTACATCGGTGAGTCCCACACTAAGTATTTTTTATCCTTTTCTTCTGTAATTATCGGACTCACATGCATTTTACAACAGCCTGAACTGACAATCACATGCAAGTGTTGGTCTTTCTTATCACCAGTGTATATAAATGACTGCGCATTAAAACATAATCAATGGTGCTAA

Function

NR:

description
PREDICTED: collagen alpha-1(II) chain isoform X2

GO:

id name namespace
GO:0033334 fin morphogenesis biological_process
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K19719 COL2A; collagen type II alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238282.1 True 4733 mRNA 0.59 51 17229394 17253899

Neighbor

gene id symbol gene type direction distance location
edil3a edil3a,edil3,LOC107685241,LOC107669516 coding upstream 66504 17035795 ~ 17162890 (+)
LOC122346216 fam101a,LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding upstream 674830 16543835 ~ 16554564 (+)
LOC122345769 zmat4a,zmat4,LOC107594996,LOC107587306 coding upstream 819474 16400432 ~ 16409920 (+)
LOC122345865 si:dkey-114c15.7,LOC107597238,LOC107672487,LOC107733230,LOC107592265,LOC107748635 coding upstream 839750 16379355 ~ 16389644 (+)
tmem8b tmem8b,si:dkey-84j12.1,LOC107553610 coding upstream 977622 16144894 ~ 16251772 (+)
LOC122344734 col27a1b,LOC107720245,LOC107672548,LOC107587699,LOC107699687,LOC107731038,LOC107720196,LOC107552608 coding downstream 6253 17260152 ~ 17316269 (+)
LOC122345236 sh2d3c,LOC107731039 coding downstream 65961 17319860 ~ 17328414 (+)
LOC122345919 camsap1,camsap1a,LOC107705949,LOC107675701,LOC107661566 coding downstream 119374 17373273 ~ 17374248 (+)
LOC122344741 otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870 coding downstream 120953 17374852 ~ 17377009 (+)
rasa1a rasa1,rasa1a,LOC107720192,LOC107553923,LOC107669512,LOC107753180,LOC108443998 coding downstream 300511 17554410 ~ 17586352 (+)
G37308 NA non-coding upstream 339417 16889197 ~ 16889977 (+)
G37291 NA non-coding upstream 401918 16827125 ~ 16827476 (+)
G37286 NA non-coding upstream 416977 16787830 ~ 16812417 (+)
G37260 NA non-coding upstream 568651 16660521 ~ 16660743 (+)
G37155 NA non-coding upstream 1132389 16095985 ~ 16097005 (+)
G37330 NA non-coding downstream 96692 17350591 ~ 17350922 (+)
G37333 NA non-coding downstream 97257 17351156 ~ 17353096 (+)
G37331 LOC107720200,LOC107699749,LOC107756319,LOC107587493,LOC107703272,LOC107567144,LOC108423573 non-coding downstream 100707 17354606 ~ 17357759 (+)
LOC122345748 NA non-coding downstream 339969 17593868 ~ 17614996 (+)
G37433 NA non-coding downstream 638052 17891951 ~ 17893273 (+)
G37228 ncor2,LOC107742750 other upstream 667653 16486620 ~ 16561741 (+)
G37227 NA other upstream 668662 16474708 ~ 16560732 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 833832 16391797 ~ 16395562 (+)
G36640 NA other upstream 2508907 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 2576483 14645945 ~ 14652911 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 110950 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 272125 17526024 ~ 17527444 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 1588920 18842819 ~ 18847674 (+)
G37626 LOC107720210 other downstream 1684914 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 1708423 18962322 ~ 19014100 (+)

Expression


Co-expression Network