LOC122344734 (col27a1b,LOC107720245,LOC107672548,LOC107587699,LOC107699687,LOC107731038,LOC107720196,LOC107552608)


Basic Information

Item Value
gene id LOC122344734
gene name col27a1b,LOC107720245,LOC107672548,LOC107587699,LOC107699687,LOC107731038,LOC107720196,LOC107552608
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17260152 ~ 17316269 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238284.1
ATGGCTGACTCTAAACACCTGCATGTGGATGTGCTCCAAAGACTGGGATTGGTTGGGAAACGACCGTCTGGGACACGCTCCCCACCTCAAGGTGTCATCCCCTTTAAATCAGGAGTCATCCTAAACCAGAGGGCACGAATTGACGTCCCAGTGAGCTCCGTCATCCCGGCATCACTGGGCTCGACGTTCTCTCTCATCCTCAGTGTATGTTCGCATCGCATAAACAATGCTTTCCTCTTCACCGTTGTGACAAAGAGGAAAAGACTGCAGCTAGGGGTGCAGTTCATCCCTGGGCAAATCGTATTTTACTTGGGCCAAAAGAACGCTGTAAATTTTGATTATGATGTTCACAATGGTCAGTGGCACAACCTGGCTTTGGAAATCCAGGCCCAAAGGGTTACGTTATATACTTCTTGTGGGAAGACAAGTGTACAagcaaatttgcattttaaaaatgaggaAACGCTGGATCCAGAGGGCTCCTTTCGTTTGGGAAAAACGAGCCAGAACTCAGTGCAGTTTGAAGGAGCCATCTGTCAGTTTGATATTCATCCCTCTGCTAAGGCAGCTCACAATTATTGtaagtacattaaaaaacagTGCAGGGAAGCTGACACTTATCGGCCAAACCTCTCTCCTCTTTTACCGTTATTACCCCTGGATCCCAATATATCTGTTACCGTTCAGACCCCAAATGTTGTAACAGAGGTAAATGACAGACATCTTTCATTAACACAAGACAAAGTACACATTAATCATGAAACCTCACGAGTCCTAAACACCTCCGTTTTAATTACATCTCAGTCCGTACAAAGCACGTTAGCACCGATGATAGCTCACCCCACACTACAGCTCCCCCTGCAGGCCTCAGCACAAACTGCCATGGCCTCCTTTGGGAGTAGGacatcagaaatatcttcaaAGCCAACTCAGCAAAGCAGTCACAGGAGAAACCTCATAAGGGCAACTGTAAAGCCCCAGATACTAAAAGAGAACGGGATTGCTATCACCTCCACGCCAGCAGGCCAACAGAAGAACAAACTGGATATCCAGACCACTGCCACAACAAAACCTACATCTTCTAGCACATCCAGAGTTTCTGAGATGACAAATATAGCACCACAGAGACCTTTTCCAAAGGAAACCTCCATACCAAGCTCCTTTGAGACCGTCACTCCTGCAGCAACGGAtggtttccaaacttttgaccttGAACCAACCCAATACTCCCTCTTGGCTGGGCCACCAGGACAGAAAGGAGAACCAGGACCACCGGGACCTCCAGGACCTCCTGGAAAGCCAGGATTACCAGGAAAGAGAGGGCCCAGGGGTTCCCCTGGTCCGCATGGAAACCCAGGCCGCCCAGGGACCAACGGGCCCAAGGGAAAAAAGGGAGGCCCTGGGATCTCACCCGGCAAGGCACAAAATGGAATAAagGGGGACCCTGGTATATTAGGGCTACCCGGACTACCCGGTCAAGCTGGTCGGAAGgGACAGCAAGGCCATCCTGGTCCATCTGGCCAACCCGGAGATCAAGGAGAAAGAGGACTGGATGGAAGCCCGGGTGCCAAAGGTTATCCTGGCAGGCAGGGTTTGTCAGGGCCTATAGGAAATATGGGACCAAAAGGTGTACGGGGCTTCATTGGAATCCCAGGCGTCTTTGGTCTCCCGGGACCTGATGGAGAAAGAGGTTTACCTGGTGTTCCTGGGAAGAAGGGCAAGATGGGTAGGCCGGGCTTTCAAGGAGGTTTTGGGGAGCAAGGACCACCAGGACCTGATGGAAACCCAGGGGAGATGGGTGCCCCAGGTCCCGTTGGCATCCCTGGTTTTATTGGTGATATGGGTCTTGTTGGAATTGTGGGTCTTCCTGGATTAATAGGACCAAAGGGAGTACCAGGAAACCCTGGCGAGCCTGGACTGAAAGGTGATAAGGGTGAAGTCGGGTTTCCAGGTGAACCGGGAGAACCTGGATTCCAAGGTGACAAGGGTAATCAGGGCTCATCAGGTTTACCAGGAATTCGAGGAAAGCCAGGACCTCAGGGGCAACCTGGAGATCGAGGCCCAGACGGTTTGCCAGGCCCATCTGGCCCTAAGGGTTTTCCAGGGGATTTTGGACCACCAGGACAAAATGGTGCTGATGGCCCAAAGggGAATGCAGGAACAAGAGGGATTCCGGGCCCTACAGGAGTTACAGGACTTGAGGGAGATCAGGGCCCAGTAGGACCACCAGGGGCTCCAGGACTAGAGGGCAGACCTGGGAGGAAGGGTTTCCCTGGGAATCCAGGGGAGGAGGGAATGAAGGGCGAGCCTGGATTTCCTGGAAATCCTGGGATGCTTGGTGAGAGGGGTCTTATTGGTTTTGTCGGACCTGTCGGTGAGGTGGGGTTTCCTGGAGAAAAGGGAGATCGTGGTGAGATGGGTCTGCCCGGGCCACCTGGAGAAAAGGGAGCGATGGGACACCCTGGGGCCCCGGGTGAGAGAGGCCCATCTGGACCAGAAGGTACACCAGGGCCTCCTGGGTCTAGGGGCCTCAGTGGCACCAGAGGACCCAAAGGCATAAGGGGTGCAACGGGACCAGACGGACCAGGTGGAGACAAAGGAGTGGTGGGAATGAAGGGTCCTGAAGGCCCGCCGGGGAAACAAGGCTTCAGCGGACAAGtgGGTGAAATTGGAGAAACTGGTGAAACCGGACCAACTGGATTTCCAGGTGTTCAAGGACCAACTGGACCTCCTGGTGCAAAAGGCATCTTAGGAGAACCTGGTCCTCAAGGGCCATCAGGAGTATTAGGTCCATTGGGTGAGATTGGAGCAGTGGGTTTACCCGGAAAGGTTGGGGAGCAAGGCCTACCAGGTGAACCCGGAGAGAAGggtGTTGATGGATCTCCTGGGAATATGGGAGAGCAAGGCTTGATTGGAACTCGAgGCGACCCTGGGCTTGATGGGGAGGCTGGCCTGAGTGGCCCTGATGGAACTAAgGGTGAGAAGGGTGACATTGGTATGGAAGGAGAAACAGGTGAAAACGGAGCCATCGGATTTAAAGGAACAGAAGGCCGTGTGGGAGACCCTGGCATAACAGGTTTAAAGGGCCCTGAGGGCAAACCCGGAAAAACTGGTGAGAGGGGAAAACCTGGAGAGAAGGGCAGCAAAGGTCCCCAGGGTCACCTTGGCGAGACTGGACAAATGGGAGAACAAGGTACCATGGGTTTCATCGGGCCAAAAGGAAGCAGAGGAACTATTGGGTTTatgGGTGCTCCAGGGAAAATGGGTCAGCATGGAGAACCAGGTTTAGTGGGATATGAAGGTCATCAAGGACCACAAGGTCCCATGGGATCCACAGGACCAAAAGGTGAAAAgGGAGAGCCAGGTGATGATGGGAAGGTTGAAGGTCCACGCGGTCCTTTAGGTGACATCGGGCCTGTTGGCAACAGAGGAGAAAGGGGACAGCCAGGTGACCCTGGATACCAAGGTCACGAAGGTGTTCATGGGCAAAGAGGAAACCCAGGGGCTCCTGGACTCCCTGGAAATGCCGGGCCAAAAGGTTTTCCAGGGCCTAAAGGATCCAAAGGCAATAAAGGTGCAAAGGGCAAAAATGGCCCGCGCGGGAAATCTGGAAATCGAGGGTCACCTGGTCCTGTTGGTCTCCCTGGCCCCAGAGGAGTTGTTGGTCGTGAGGGTCCTGAGGGTGATCCTGGGATAGAAGGAACCCTTGGGAAAGATGGAGCTAAAGGAATGCCAGGTGAGCACGGAGGTGATGGGGAGGTTGGTCCACCTGGAAAAGCAGGTCCTCAAGGAAACACGGGTGTATCAGGTCTGCCAGGAATTCAAGGCTCTTTTGGGCCAAAGGGTGAAAGGGGCATCCCTGGCCAAGCTGGACCTCCAGGAAAAAGAGGATTTAATGGGGGAATGGGATTTCCTGGAAAACAAGGTGACCgtggggtcaaaggtcaaccTggtGACTCTGGTGAACAGGGATTTCCTGGAGTTCTTGGAATATTTGGACCAAAGGGGCCTCCTGGAGACCTTGGCCCAGTGGGAATCCAGGGCCCGAAGGGTCCTCAGGGTTTAATGGGTATGCAAGGAGTCATCGGACCCGTTGGTATCATTGGGCCTAGTGGTAACCCAGGACAACAAGGAGACAAAGGAAACAGAGGGGAAATGggTGTTCAGGGACCCAGGGGACTTCCAGGTCCTCGTGGACCACCTGGACCTCCAGGGCTTCCTGGTGTATCTCTCTCTCATGAAAGTGAAGCTCTTGGTGCTGCTTTAGTTATGGATTCCCGCTCCACTTTACGGTCCAAGACATATGAAGATACAGACCCTCTAATGCTGGACCAGGGAAGCCAAATCTTTAAGACTCTTCGCTACCTCAGCACTCTGATCCACAGCATAAAGAATCCTCTGGGAACACAGGAGAATCCTGCCAGAATGTGCAGAGATCTGTTTGAATGCGAGCACAGGTTGAACGACGGCACTTATTGGATAGATCCTAACCTGGGCTGCGCTTCTGACAATATTGAAGTGACCTGCAACTTCACCACTGGAGGTCAAACCTGCCTCAAGCCAGTCGCTGTTTCCAAGTTGGAGATTGGAGTGAGTCTGATCCAGATGAACTTCATCCACCTCCTGAGCTCTGAAGCTGTGCAGATCATCACCATTCACTGCCTGAACGTCTCTGTTTGGGCAGCAGGGGACTCCAAAACACCTTCCTCTAGTGCAGTGTACTTTAAAGCCTGGAACGGACAGATAATCGAGTCTGGGGGATTCATCGAGCCTGAGCTGATAAAGGACGAGTGCTGGATGACAGATGGACAATGGCATCAGACACAGTTCATGTTCCAGACGGAGGACCCAAACTTACTGCCCATTGTGGAGGTCCACAACTTCCCCAGCACAAAATCTGGCTCACATTACCACCTTGAAGTGGGGCCTGtgtgctttttataaaaaaaaaaaatcaacaatgaAAGCCTTGAATACCCCGATCAGCAGCATTACAGAGCCTCTATCTGGCCTAGAAACCAACAAAACTGTACATCTCCTCTCCAGCGTGGACTGCAGCCTTTAAACATGAGGAAAGAAGGAACTAGAGCAGCTTTGGAGAAAACAAGACTTCTTATGTGAGCAGCTCGGGATGACAGATTCTTTCTTTTCTGAGCTGGGATTTCTTCTGTTCGAAAACGAGGCCTGGAGATGTGGTTAGAGGTGCTTCCTAAACTCTTAATAGAAGTCTTAATTTATTCGTAGTTGGGTTTTTCCCAAATGATCCGTGTGGACAAGGaacaattaagacattttatttttaatgaagtacTTATTTTGTATTCTATAGTCATACATGatcatgtgtatttatacatgtacgtgtgtgtttgtatattttctgtgtAAAGTGCAATAGAGAATGGacagattgttttgttttttaaagatgaatctTCTGTTTGGCTGTTCTAGGCATTTGAGGTTTTACTGTCATATCATTCAATTCAGGTTCATTGTCTTGTGTACTTGTGTATATACCAGCAGGTCTGTTGTAAAAGCCTTCGATACCAACATGCATACAAAAACACGCATATGCATGAATTCATAGCTAGAATATCAGTTGAGGTGAATCCAGACTTGAAAAGCAACATATAAACGTCTACCTCCCATCTCTCATTTTTTGGTGTTTTGGGACAGTAAATGGATTCACATGCATTTAACTCCTGTGGTaagatttcaaatgtttttaacttaaGTGCCTTTTATACTTTGAAAgggaatatttttgtataaatctttaaaaaggaaaaagatctttttttttcagccaaacATAATTGTAACCCTTTATCTTCTAGTATGCCTTATTTGTACAAATGTTTGAACTTTAAGGGCTGAAGAATTATATTATCATAGCAGACATTGtgttaaaagtgctttatatCACTCAACTCTAGGTCTTTCCATCATTAAGTACATATATGCATTTCCATAAGCCCTATCTGACTGCAGTAGTAATTGTTTGACATGGTCTGTGTCATAATTGCTGATTTTTGTATGTCTTTTGTAAGGCCCGTGTACAAAGATAAATGTTGCAGTTAGAAACTGCAAACCTGAGTTGTAATAAGAAGTTGTTAAACTAAATGAGAACACTAGAATCTTCCACTATATTGGGTCTGTTATGAGCAGTGACTTTGACTTTGAGTCACGGCAAGctaattattgattattatgaGTTATGTATGATATTcttgtgaaatatatatgttgttttcaTCAAAACCGTCAGGAGCCATCTTATCTTGCCAAAAGAGGTTGTTAAATATCTGTTctttatttgtgtacatttacGATCTTGCTGTAATCCACGTTTTGTGATTTCAGAGCAGACAAAGAAAGGTGGATATTTtccaattaatattttatggtcAGGCATTACCTATGAACAACAGCAAACGCCAAAGAACGAAGATTTCAGCGTTTACAAATTAAATCCGTGATACCACAGAAACAGACAGCAGTCTTTATATCTGTTTGCCTTACTAAAGTTCTTGTTTCTGGCCAATCTCGTGTCTCATTTGAATAAAGGAAACATGTTGACAATCTTCA

Function

symbol description
col27a1b Predicted to be an extracellular matrix structural constituent. Acts upstream of or within bone mineralization; notochord morphogenesis; and skeletal system development. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in cranial cartilage; notochord; and notochord posterior region. Orthologous to human COL27A1 (collagen type XXVII alpha 1 chain).

NR:

description
collagen alpha-1(XXVII) chain B precursor

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0030282 bone mineralization biological_process
GO:0005581 collagen trimer cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238284.1 True 6591 mRNA 0.48 60 17260152 17316269

Neighbor

gene id symbol gene type direction distance location
LOC122344732 LOC107570126,LOC107742021,LOC107694705,LOC107675326,LOC107715436,LOC107574130 coding upstream 6253 17229394 ~ 17253899 (+)
edil3a edil3a,edil3,LOC107685241,LOC107669516 coding upstream 97262 17035795 ~ 17162890 (+)
LOC122346216 fam101a,LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding upstream 705588 16543835 ~ 16554564 (+)
LOC122345769 zmat4a,zmat4,LOC107594996,LOC107587306 coding upstream 850232 16400432 ~ 16409920 (+)
LOC122345865 si:dkey-114c15.7,LOC107597238,LOC107672487,LOC107733230,LOC107592265,LOC107748635 coding upstream 870508 16379355 ~ 16389644 (+)
LOC122345236 sh2d3c,LOC107731039 coding downstream 3591 17319860 ~ 17328414 (+)
LOC122345919 camsap1,camsap1a,LOC107705949,LOC107675701,LOC107661566 coding downstream 57004 17373273 ~ 17374248 (+)
LOC122344741 otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870 coding downstream 58583 17374852 ~ 17377009 (+)
rasa1a rasa1,rasa1a,LOC107720192,LOC107553923,LOC107669512,LOC107753180,LOC108443998 coding downstream 238141 17554410 ~ 17586352 (+)
LOC122345176 LOC107720189,LOC107660966 coding downstream 275644 17591913 ~ 17593686 (+)
G37308 NA non-coding upstream 370175 16889197 ~ 16889977 (+)
G37291 NA non-coding upstream 432676 16827125 ~ 16827476 (+)
G37286 NA non-coding upstream 447735 16787830 ~ 16812417 (+)
G37260 NA non-coding upstream 599409 16660521 ~ 16660743 (+)
G37155 NA non-coding upstream 1163147 16095985 ~ 16097005 (+)
G37330 NA non-coding downstream 34322 17350591 ~ 17350922 (+)
G37333 NA non-coding downstream 34887 17351156 ~ 17353096 (+)
G37331 LOC107720200,LOC107699749,LOC107756319,LOC107587493,LOC107703272,LOC107567144,LOC108423573 non-coding downstream 38337 17354606 ~ 17357759 (+)
LOC122345748 NA non-coding downstream 277599 17593868 ~ 17614996 (+)
G37433 NA non-coding downstream 575682 17891951 ~ 17893273 (+)
G37228 ncor2,LOC107742750 other upstream 698411 16486620 ~ 16561741 (+)
G37227 NA other upstream 699420 16474708 ~ 16560732 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 864590 16391797 ~ 16395562 (+)
G36640 NA other upstream 2539665 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 2607241 14645945 ~ 14652911 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 48580 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 209755 17526024 ~ 17527444 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 1526550 18842819 ~ 18847674 (+)
G37626 LOC107720210 other downstream 1622544 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 1646053 18962322 ~ 19014100 (+)

Expression


Co-expression Network