LOC122344736 (apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151)


Basic Information

Item Value
gene id LOC122344736
gene name apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17329196 ~ 17345615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238288.1
TAAAATCAGAGTTCTTATAGACAGAATAAACCCTGAACGTATTAATATGCGCACAGGAAGTGTCACTGACTCAAAAGCACAAGACAGATGGTGCGATTTGTCGCGGGATGGTTTGGGGGCAGGGAGGGTATTTACTGCCGTATAATCCGCTCTGATGTCACCGTGTAAAGAAGGAGGGGTCTGAGATCCGTTCGCTTTAATCCCAGCGCGTCGATAAGAACGACCGACGAAGATGAAGAGCTCTTCTTCATCGCTCGTGTTCGTGACAGGCGATGAGCAGTGAGTGGGCGGAGCCATGAGCCATAGGGAGGAGCCAGAGGAGGCGGGTCTCAGAGGTCCTCCCCCTCATCGCAGCAAGCAGGCCAATGGGACGCCTCTAGAAGGCGGTCGACCCAGATGGAGGCCATGCCAGCTTCACAATCCGGATGCAGAAGGCCAAGgccaccaccatcatcaccaccaACACTATCACCATCAAGCCAACCAGCACCCGTCTGGATCGAGCCGGGCTGCACCGCGTCACCGTAGGCGGCACGTTCCCGGGCAAGCACAACGCAGGCGGGCTGAGAGCGGAGATACAGAAGCTAGAGCTGGCCAACAGCCCAAAGCGGGGGCGTCAAGACACCACCGAAGCGGAGAGAGACTCCATCAGCACAGATATAGACAGCAGCacaaagcagaagaagaagaggtgGTCAAAACTCCTCCGAAAAAACAAGCTCCAGAGCCGTTATCTCCTGAAGATTCCTCGCAAGAACTGCTGACTCCTTCTCCTCAGGATGAACCAATCACTGATAGTCTGGATGGAAACAGTCCAGATGTGTCCCATTCATCTGATACACAAGTCGATCGCGATCTAGAGTCTTCAAGGGAACAGCTGGAGGACATAGTTCAAAGTGAAGAATCAACATTGGGCGAAGAGGAACTGACCAAagaagaatattttaaagaaactcCTGAGCAGGACTATGCTCCTCCTAAGACTGCTTCAAAAAGTCGTCCTGAAAGTAAAAGAACCAGTCCGCTAAGAGTAGACGTTCCTCCATTCGTCACATCTCCTCACCATATGATAAACAAACCTTTTTTCCAGTCTCCACGAAGCTTCCCTGAGACTCTTCGAAGCTACAATTCAGATCCGAACTCATACCCTCCTCTTTTTAACGTGGGTTATTCTCACACAAACAAGGATAAAGGGTTTGAGAGTCCCATGTCCCATCAAGAAGATCTCTCAGACTCCAGTCCCGAAGCCTGCTCTGATTCCTACCCGCAGCTGAGCCCTGAAGAGACTCAGAGAGAATCATACCTAACAGATCCTCATCCAGCCCTCGAGGGACCTCAAGTGTTCGAGAGCGTGACCACGGATGAGTGCGACCCTCAGGAAGACATCGGTCTGCTTCGTTCCGTGGGCTCCAGGCTGCACCACTACGACGAACAGTCAGGAGATGAAGCCGAAAGCTCAGGGAGAGTCAGGGCCCAGGTCAGGAAGACGTCAAGCTCGACTAGCCTTTCCCAAGAAGCTCCTCCACGAGAGGAGGCTCCGGAAACTGCTCAGCTTTCACCTGAAGCCGTGGAAAGACCTGACACGTCGTCCGCTCCGGCCCAGGATCAGATAACAGAGTACTGCAGAGACGCAGGGGACGCTGTCTCGCTGGCTATTAAGGATATTAAGGAAGCTATCGAGGAGGTGAAGACCAAGACGGTGCGCTCGCCCTACACGCCTGATAAGATCACAGAGCCCGTGTGGGTGATGAGGCAGGATCTGAGCCCGGTTGAGGAGAGCCATCCTCAGCCACAGCCTCAGTCTGCATGTCAGCTCTCGCTAACTTCTCCACAGTATGCGGTGAGTGAGCTGTCCGCCGTGATTACTGTAATTCCTTACGtaaatgtagcttttgtatTTCTTCAGTTGTCCAAAATAATAGACCGTAAATCATGTCATATTAATGAATGTGTCTCGTCTGTCCAGTCACCAGGCTCAGGCTCCACCTCCCCTCAGGGGGCGGAGTCTTCCAGCCGTCACCTGCCGTCACATGAGGGGAGTGACAGCTTCGAGTCTCCATCTCCTGCCAGTAAAGAGTCAAGGAGAAGTCTTGCTTCATTTCCGACATATGTAGAAGTACCAGGCCCATGTGACCCAGAGGACCTCATCGACGGTATTATCTTTGCTGCTAACTACCTGGGATCCACCCAGCTGCTCTCAGACAAGACACCCTCCAAAAACGTGCGCATGATGCAGGCTCAGGAGGCTGTGAGTCGCATTAAGACGGCCCAGAAATTAGCCAAAAACAGGAAGAAGGCTCCAGAAGGTGAAGCTCAGCCCATGACGGAGGTGGACCTATTCATCTCCACTCAGAGAATCAAAGTGCTCAATGCAGACTCGCAGGAGACCATGATGGACCACCCTTTAAGGACCATCTCCTACATCGCTGATATTGGGAACATTGTGGTGTTGATGGCCCGCAGGAGAATGCCTCGCTCCGACTCTCAGGAGAACATGGAAGCCTCTGACCCAGCTCAGGACGAGAAGCGCCAATACAAGATGATCTGTCACGTGTTTGAGTCTGAAGATGCTCAGCTCATAGCTCAGTCCATCGGCCAGGCTTTCAGTGTGGCGTACCAAGAGTTCCTGCGTGCCAATGGCATCAACCCAGAGGATCTGAGCCAGAAAGAGTACAGCGACCTCCTTAACACACAGGACATGTACAACGATGACCTCATTCACTTTTCCAAGTCTGAGAACTGCAAAGATGTTTACATAGAGAAGCAGAAGGGTGAGATTCTTGGGGTGGTGATCGTGGAGTCGGGCTGGGGCTCCATCCTGCCCACGGTGATTATAGCAAACATGATGCATGGTGGCCCGGCAGAGAAGTCCGGCAGACTGAACATCGGGGACCAGATTATGTCCATCAATGGCACCAGCCTGGTGGGGTTACCTCTCTCCACCTGTCAGAGCATTATCAAGGGACTGAAGAACCAATCCAGAATAAAGCTTAACATTGTGAGATGTCCACCTGTGACCACTGTCCTCATCAGAAGACCAGACCTGAGATATCAACTGGGATTTAGTGTGCAGAATGGCATTGTGGGTGGTACAAAGAGCTGTAGATTGTCCGTGGTTTATATTGAAAGAAATCCTTTGGTTTCATCTGGTGAAGCTGTAAGCCCCACAGAGTACTAG

Function

symbol description
apba1a Predicted to enable amyloid-beta binding activity. Predicted to be involved in chemical synaptic transmission. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be located in synaptic vesicle. Predicted to be active in cytoplasm; dendritic spine; and plasma membrane. Orthologous to human APBA1 (amyloid beta precursor protein binding family A member 1).
apba1 Predicted to enable amyloid-beta binding activity. Predicted to be involved in chemical synaptic transmission. Predicted to act upstream of or within several processes, including amino acid transport; in utero embryonic development; and intracellular protein transport. Located in Golgi apparatus.

NR:

description
PREDICTED: amyloid beta A4 precursor protein-binding family A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238288.1 True 3178 mRNA 0.52 12 17329196 17345615

Neighbor

gene id symbol gene type direction distance location
LOC122345238 cfap157,LOC107587652,LOC107672550,LOC107731015 coding downstream 8138 17316381 ~ 17321058 (-)
LOC122344899 LOC107663257,LOC107742022,LOC107570120 coding downstream 69249 17258466 ~ 17259947 (-)
LOC122344715 vps37b,LOC107673398,LOC107594993,LOC107656485,LOC107587312,LOC107709855,LOC107721558 coding downstream 913191 16413057 ~ 16416005 (-)
si:ch211-204c21.1 LOC107746847,LOC107561610,LOC107680600,LOC107719926,LOC107660265,LOC107553608 coding downstream 1191033 16115390 ~ 16138163 (-)
LOC122346134 LOC107681310 coding downstream 1214772 16095748 ~ 16114424 (-)
LOC122345546 LOC107699749,LOC107587493,LOC107756319,LOC107703272,LOC107567144,LOC107720200 coding upstream 9314 17354929 ~ 17359741 (-)
LOC122344712 ckmt2b,ckmt2,LOC107720280 coding upstream 36416 17382031 ~ 17384148 (-)
ccnh ccnh,LOC107753181,LOC107553924,LOC107720191,LOC107660965 coding upstream 241208 17586823 ~ 17592357 (-)
tmem161b tmem161b,LOC107720188,LOC107660970,LOC107669514,LOC107753179,LOC107553926 coding upstream 270598 17616213 ~ 17632162 (-)
mef2cb mef2cb,mef2c,LOC107720185 coding upstream 340886 17686501 ~ 17755766 (-)
G37340 NA non-coding downstream 164044 17162677 ~ 17165152 (-)
G37310 NA non-coding downstream 438006 16890704 ~ 16891190 (-)
G37309 NA non-coding downstream 438878 16889042 ~ 16890318 (-)
LOC122345772 NA non-coding downstream 470220 16858600 ~ 16858976 (-)
G37296 NA non-coding downstream 502970 16825784 ~ 16826226 (-)
G37363 NA non-coding upstream 5700 17351315 ~ 17352410 (-)
LOC122345155 NA non-coding upstream 300481 17646096 ~ 17686024 (-)
G37427 NA non-coding upstream 322644 17668259 ~ 17692145 (-)
G37439 NA non-coding upstream 546342 17891957 ~ 17893318 (-)
G37453 adgrv1,LOC107669515,LOC107660972 non-coding upstream 600932 17946547 ~ 17946764 (-)
LOC122345693 NA other downstream 469265 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 616029 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 696075 16596855 ~ 16633121 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 950681 16376266 ~ 16378515 (-)
LOC122344710 LOC107755722,LOC107681456,LOC107700059,LOC107553585,LOC107727439 other downstream 1072204 16253952 ~ 16256992 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other upstream 854 17346469 ~ 17350380 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 1829848 19175463 ~ 19183978 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 2519404 19865019 ~ 19935576 (-)
G38058 NA other upstream 2706044 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 2779974 20125589 ~ 20127390 (-)

Expression


Co-expression Network