cldn26 (LOC107716548,LOC107653273,LOC107755822,LOC107599648,LOC107668741,LOC107576154)


Basic Information

Item Value
gene id cldn26
gene name LOC107716548,LOC107653273,LOC107755822,LOC107599648,LOC107668741,LOC107576154
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1569404 ~ 1570066 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238289.1
ATGGTGCTGTTCACCACTAAGTTTGTCCAGAGAGCTTCGCTCTTTGTGTCCTTCGGAGGTTTAGTCACAACCTTTATTACAACATTCCTGCCACTATGGAAGACGATGAACTCGGATCTGAATGAGATGGAGAACTGGTACGAGGGTCTCTGGCACATGTGCATCTACACAGAGGAAGTAGGCATTCACTGCAAAGCCTTCGAGTCTTTTTTAGCCCTTCCGCTGGACACTTTAGCTTCCCGGGTCCTCATGTGCATTTCCATCGCGACGGGATTCCTCGGTGTGGGGGCTGCTTTTTTCGGACTCCAAGGTGTTGAGATCGGCGCCGGGCGGGAGAGGATGAAGAGGACGCTGCTCATCCTCGGAGGGGTGTTTATCCTTGTGTCGGGGATCACGACCCTAGCACCTGTTTCACTAATGGCGTACATAATGGTAGTGAAGTTCTGGGATGAGAATCTTCCGGATGTGATGCCCAGATGGGAGTATGGAGAGGCCATGTTTTCTGCCTGGTTTGCCGGACTTCTGTTAGTGGTTGGAGgggcttttctttttgttgccGTATGCATGGGCGATCATGAAGCAAAGCTGCAAAGTAAAATTCTCGCTCGCAATCAAGAACAACGCCCGAGAACTCAGTattacagaaagacagaaatcaTATAG

Function

NR:

description
PREDICTED: putative claudin-24

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238289.1 True 663 mRNA 0.50 1 1569404 1570066

Neighbor

gene id symbol gene type direction distance location
LOC122344835 aifm3,LOC107668732,LOC107716541,LOC107599649,LOC107755821,LOC107653263,LOC107599166 coding downstream 4858 1543418 ~ 1564546 (-)
LOC122345935 NA coding downstream 42486 1524902 ~ 1526918 (-)
LOC122346041 NA coding downstream 49538 1512140 ~ 1519866 (-)
vsig10 vsig10,LOC107704538,LOC107599650,LOC107668731,LOC107736326,LOC107716538 coding downstream 57215 1506685 ~ 1512189 (-)
wsb2 wsb2,LOC107704505,LOC107716543,LOC107668737,LOC107599617 coding downstream 63172 1501467 ~ 1506232 (-)
lztr1 lztr1,LOC107716547,LOC107704547,LOC107755835,LOC107668721 coding upstream 2082 1572148 ~ 1579628 (-)
p2rx2 p2rx2,LOC107704555,LOC108431687 coding upstream 27781 1597847 ~ 1603060 (-)
mapk1 mapk1,LOC107741490,LOC107704570,LOC107599610,LOC107386038 coding upstream 126366 1696432 ~ 1717901 (-)
ppm1f ppm1f,LOC107599133,LOC107741489,LOC107755823,LOC107668739,LOC107704983 coding upstream 151167 1721233 ~ 1732137 (-)
top3b top3b,LOC107705001 coding upstream 163033 1733099 ~ 1745696 (-)
G32462 NA non-coding downstream 2255 1541226 ~ 1567149 (-)
G32463 LOC107599159 non-coding downstream 30036 1537398 ~ 1539368 (-)
G32440 NA non-coding downstream 56092 1513045 ~ 1513312 (-)
G32409 NA non-coding downstream 277641 1289278 ~ 1291763 (-)
G32292 NA non-coding downstream 517225 1051867 ~ 1052179 (-)
G32486 pes,LOC107704970,LOC107741508 non-coding upstream 36359 1606425 ~ 1607747 (-)
G32572 NA non-coding upstream 96632 1666698 ~ 1666906 (-)
G32579 NA non-coding upstream 189578 1759644 ~ 1759857 (-)
G32581 NA non-coding upstream 192412 1762478 ~ 1762829 (-)
G32583 NA non-coding upstream 193209 1763275 ~ 1763648 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other downstream 214990 1342606 ~ 1354414 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other downstream 233217 1312604 ~ 1336187 (-)
wdr31 wdr31,si:ch73-266o15.4,LOC107653158,LOC107667323,LOC107751417 other downstream 938278 622514 ~ 631126 (-)
ddr2l ddr2l,LOC107704361,LOC107725118,LOC107550294,LOC107723312,LOC107667359,LOC108444179 other downstream 986309 556654 ~ 583095 (-)
kcnv2b atp5ib,atp5i,atp5ia,kcnv2b,LOC107703581,LOC107725101,LOC107704252,LOC107594594,LOC107723293 other downstream 1181526 382052 ~ 387878 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other upstream 102958 1673024 ~ 1694286 (-)
G32676 NA other upstream 396571 1966637 ~ 1967748 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other upstream 450030 2020096 ~ 2022922 (-)
G32857 NA other upstream 926438 2496504 ~ 2554146 (-)
snrnp27 snrnp27 other upstream 1010482 2580548 ~ 2585452 (-)

Expression


Co-expression Network