CI01000004_15260416_15262090 (APODA.2)


Basic Information

Item Value
gene id CI01000004_15260416_15262090
gene name APODA.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15260239 ~ 15262240 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15260416_15262090.mRNA
CTATAAATACCAAACTTTGTCACTGTTCTGTACCTTGAACACAAGTTTCACTCTTGAGACCAAACAGGTAAGATGATGCTTGAGTCTCAGTTTCAGCAAACTATCCAACTCTTAATTCAAATGTTCTTGTTATGCTCATTAATTATGCCTTTTGTTCTTCAGGTTCAAACTGAAATAATGCAGGCTCTTCAGGTTCTGTCTCTGACTCTGCTGTCTGTGCTGGCGGTCAGCGCTCAATCCATCGGATCTGGAAAATGCCCAAAGCCTCCTGTTCAGCAAAACTTTGATCCTACTAGGTACATGGGCAGATGGCACGAGATCATGAAGATTCCAGCACCGTTCCAGTTGGGAGAGTGCTGCCAGGCCACTTACACTCTGAGTGACGGCATTGTCCTGGTTCGAAACGATGAGCTTCTTGCTAATGGCACTATCAGCTTCATTGAGGGAACTGCCAAGATTGTAGATGCATCAGAGCCTGCCAAACTTGAAGTCAGCTTCTTTGAATATGCTCCTCCTGCCCCCTACTGGGTGCTGGCTACCAATTATGATGACTACACTCTGGTTTACTCGTGCTCTGAGTTCGCTGGTCTCTTTCACTCAGAGTTTTCCTGGATCATGAGCAGGACCCGCACACTTCCTAAGGAGACCATCTCTGAGCTGTTAGACATCCTCAAATCCCACGGCATCGGTACTGATGTTTTTACTGAGACCGACCAGAGACCGGAACTGTGCAGCAGCATGCCTTAATGTACCTGCCTTGAATAATGAGCTACTGAGAGAGGTGTTGTGGTCTAATTACGTTTTAAAAAGACCTAACATTTATATTGTTGGGTTTTTTTTAAACGTAATATTCCAACAACATGTTCTTAATCAGTGGTCCGTGGCACAACAATGTGA

Function

symbol description
apoda.2 Predicted to enable lipid binding activity. Predicted to be involved in lipid metabolic process and response to reactive oxygen species. Predicted to act upstream of or within aging and lipid transport. Predicted to be located in extracellular region. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in obesity and type 2 diabetes mellitus. Orthologous to human APOD (apolipoprotein D).

GO:

id name namespace
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15260416_15262090.mRNA True 897 mRNA 0.45 4 15260239 15262240

Neighbor

gene id symbol gene type direction distance location
CI01000004_15237719_15253901 COPA coding upstream 6081 15237719 ~ 15254158 (+)
CI01000004_15229290_15233374 PEX19 coding upstream 25642 15228776 ~ 15234597 (+)
CI01000004_15200553_15209521 SLC1A8B coding upstream 50415 15198242 ~ 15209824 (+)
CI01000004_15126731_15131774 NA coding upstream 128001 15126684 ~ 15132238 (+)
CI01000004_15110181_15110483 NA coding upstream 149614 15109598 ~ 15110625 (+)
CI01000004_15277204_15286845 SAMD7 coding downstream 14964 15277204 ~ 15286987 (+)
CI01000004_15291659_15296777 NA coding downstream 29419 15291659 ~ 15297847 (+)
CI01000004_15316323_15317231 NA coding downstream 53707 15315947 ~ 15317342 (+)
CI01000004_15325044_15326740 NA coding downstream 62804 15325044 ~ 15326787 (+)
CI01000004_15400244_15414139 NA coding downstream 138004 15400244 ~ 15414376 (+)
G34055 NA non-coding upstream 23856 15236130 ~ 15236383 (+)
G33896 NA non-coding upstream 36325 15223661 ~ 15223914 (+)
G34032 NA non-coding upstream 100179 15106736 ~ 15160060 (+)
G34031 NA non-coding upstream 153540 15106422 ~ 15106699 (+)
G34028 NA non-coding upstream 156071 15103966 ~ 15104168 (+)
G34061 NA non-coding downstream 9404 15271644 ~ 15271905 (+)
G33857 NA non-coding downstream 157021 15419261 ~ 15425806 (+)
G34090 NA non-coding downstream 170928 15433168 ~ 15433373 (+)
G34100 NA non-coding downstream 219023 15481263 ~ 15481530 (+)
G34101 NA non-coding downstream 219680 15481920 ~ 15482315 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 168270 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1223339 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2604528 12646838 ~ 12652570 (+)
G31865 NA other upstream 3065092 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3592580 11666900 ~ 11667659 (+)
G34220 NA other downstream 677117 15939357 ~ 15939950 (+)
G33815 NA other downstream 801175 16063415 ~ 16066464 (+)
G34400 NA other downstream 1715088 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015721 apoda.2 coding NC_007113.7 CM002886.2 37207461 ~ 37215989 (+)