pbx3a (pbx3a,LOC107668307,LOC107591489,LOC107725095,LOC107654303,LOC107715538,LOC107550583)


Basic Information

Item Value
gene id pbx3a
gene name pbx3a,LOC107668307,LOC107591489,LOC107725095,LOC107654303,LOC107715538,LOC107550583
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31979887 ~ 32016468 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238302.1
GCGCTGTTGCGCAACACCGGCAGCATCATCAGGAGGAGCTGCCGCGCGCGAGACGCTCTCACAAGCCGTTACATCTGCTGTAGATCATCCAGAAGAGCGCGAGGCGCCTTTAACAACCTGTCCGCGTTACCCCGCCGGCCCCGCGACGCAAAGGAACCAAAAACGGTCCACCGCAGCTTTTACGCATCGCCGATTTATTTCGCGCTCGAGGACGAGCGTCAAGCGGAGGGGGGATTTTCTGAAGTTTTGCAGAAGGACTGCATGGGATAATACATCGCGGCGAGGTGAAGCGCGAAGCGACAAAGTGCTCTGGACCGCTTGAGATCCCGGAAAGCGGCGGGTCGGTTCATTAAAGCACTTTTGGGTTTCGCGCACTCGGGACTCTCGCGCGTCCGTCGTTTCCAGCGCGTCGGTTCGGGACGGCGTCGACGTCTCTCGTGTGTGGATTTTAAAAGAAACCAAAGCGGAGGATGGAGGAGCAGAGTCATCTGATGCAGACCCTGGGCGGAGTGACCCTCGCCGGACACCCGGTGGCTTTACCGGTGCCTCACGACGGAAGCGACGCCAGAAACAAGCAGGACATCGGAGACATCCTGCATCAGATCATGACCATCACCGACCAGAGCCTGGACGAGGCTCAGGCAAAAAAGCACGGGCTGAACTGTCACAGAATGAAGCCGGCTCTGTTCAGCGTGCTCTGTGAAATCAAAGAGAAAACAGGTCTCAGTATCCGAGGCAGTCAAGATGAAGATCCTCCAGATCCTCAGCTCATGCGTCTGGATAACATGCTGCTGGCAGAGGGCGTGTCTGGACCGGAAAAAGGGGGCGGGGCAGCGGCGGTTGCTGCGGCAACAGCAGCAGTGGGCGTGGGAGCTGATAACTCCATCGAGCACTCGGACTACAGAGCCAAACTCAGCCAGATCAGACAGATCTACCACACCGAGCTGGAGAAATACGAGCAGGCGTGCAATGAGTTCACTACACACGTGATGAACCTGCTGAGAGAACAGTCTCGGACCCGACCCATCTCGCCCAAAGAGATCGAGCGCATGGTCAACATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTGAAGCAGAGCACCTGCGAGGCCGTCATGATCCTCAGGTCCCGCTTCCTCGACGCCAGGAGGAAAAGACGTAACTTCAGCAAGCAGGCGACGGAGATCCTCAACGAGTATTTCTACTCTCACCTCAGTAACCCGTATCCCAGCGAGGAGGCCAAAGAGGAGCTGGCCAAGAAGTGCGCCATCACCGTGTCGCAGGGGAAGGGAAGCACCATCACTGTGTCACAGGTTTCGAACTGGTTCGGTAATAAACGTATCCGCTATAAGAAGAACATCGGTAAATTCCAGGAAGAAGCCAATCTGTACGCAGCGAAGACGGCGGTGACGGCAGCTCAGGCCGTGGCGGCTGCTGTACAGAACAGCCAAAACAACTCGCCCGCAACGCCCAGCTCGGGCTTTCAGATGAAAGATGAAGACTTTCAGTTGGATGCGgcagaagacaaaaataatcTGTTAAACAACATGTTCACTGGTTCTTCAGGTTCGTATAGTTTGCCGGGTTCGGGAGACATGTTTATGAGCATGTCCGGCCTGAACGGATCCTACCAGCCGGCCTCGGTCCCCAACACAGGACAGACACAGGGAGACTCCATACGTCACACCATCGGTCAGTCGTTGGGTTACAGCGACGGCCTGCGGGGAAACCCGCTGTACAGCCCGCACGGACTGAACGGTAACGGCGGCTGGCACGACGCTGTCACTCCGTCTTCTGTGACGTCTCCTATAGAGGGAGCAAACAGCGTTCACTCGGACACCTCTAACTGAACCTTAACTGACCCCGACGATATCTCAGACGAGAACTCAGAGAGACGAGCGAGACTCAGAACCGCTCACTTCGACCAAAAACAGCACCACGTTGCAAAAATCAGCCGAGAGGATTGACGGTACCAGCTTTCTTTCCAAAACTGGCGATACCTCGGTGTCCAACATGTACGATTGTGGAAACATGGGACgctttttttgtcataatctcTGTGAACACCTTGGAacaggttttaaaatatatcacgATTTAAATTTGCTCGTAACTCTTGTCTTTTCGCGCAGTGCAGTATGTTCATTCTTAAAGACGGTTTTTCTCGTGCACatcgatttttttaaattgtatttttaacaacGTCGCCCCTCGTAAATATCGCCGGCCTTTTGGTTTCATTGAGACTCGGGCGTGATTCAGATTGATATGCAGATTCCAGAAGTAAAACGCCATCGATAATGTACAAAGAAATTGATTTTTGGCAATAATGTACCAACTGTTGAGGAACGTATAGCGTATGAAGTGGTTTTATATGCTTCCGCGGAGccgaatattttttttaaggtcaaGATTGGCTTAGAAACTCAATGTTTGCTGGAGGAATCGCACGGAAAGGTTACTTCTGAGACCGTTTGTTCATCTATTGCAGTGACAGATACTTACATAGCTTAtcgaattattttaatacatctcCTACCGTCAACAGGACGATAATGCAGATCGGACATAATAGACATAATCGGCGTGCATACTGTATCTGtacataaaaaaagcttttttgaatGTTATTCTTTTCTTACTCGATACATGTTCACTGATTATTACTTGGCTTCGGTTTTTACGTTCACGGGATCATCTGGGTAGTTTATGATTTGCAGTGAGAggttgtaatatttaaaaagtcttcTAACGTATTAACAGAATTTACACCGAGCAACTCTACGGAGAATAATTCATGTAATGTTATTAGTTTTTGATAAAGGAAATACTTGTGTTTCTGGCccacccccccccaaaaaaagtgtttgaataAACATCTGTAATTCTTAGCGGCTCA
>XM_043238304.1
CTGTTGCGCAACACCGGCAGCATCATCAGGAGGAGCTGCCGCGCGCGAGACGCTCTCACAAGCCGTTACATCTGCTGTAGATCATCCAGAAGAGCGCGAGGCGCCTTTAACAACCTGTCCGCGTTACCCCGCCGGCCCCGCGACGCAAAGGAACCAAAAACGGTCCACCGCAGCTTTTACGCATCGCCGATTTATTTCGCGCTCGAGGACGAGCGTCAAGCGGAGGGGGGATTTTCTGAAGTTTTGCAGAAGGACTGCATGGGATAATACATCGCGGCGAGGTGAAGCGCGAAGCGACAAAGTGCTCTGGACCGCTTGAGATCCCGGAAAGCGGCGGGTCGGTTCATTAAAGCACTTTTGGGTTTCGCGCACTCGGGACTCTCGCGCGTCCGTCGTTTCCAGCGCGTCGGTTCGGGACGGCGTCGACGTCTCTCGTGTGTGGATTTTAAAAGAAACCAAAGCGGAGGATGGAGGAGCAGAGTCATCTGATGCAGACCCTGGGCGGAGTGACCCTCGCCGGACACCCGGTGGCTTTACCGGTGCCTCACGACGGAAGCGACGCCAGAAACAAGCAGGACATCGGAGACATCCTGCATCAGATCATGACCATCACCGACCAGAGCCTGGACGAGGCTCAGGCAAAAAAGCACGGGCTGAACTGTCACAGAATGAAGCCGGCTCTGTTCAGCGTGCTCTGTGAAATCAAAGAGAAAACAGGTCTCAGTATCCGAGGCAGTCAAGATGAAGATCCTCCAGATCCTCAGCTCATGCGTCTGGATAACATGCTGCTGGCAGAGGGCGTGTCTGGACCGGAAAAAGGGGGCGGGGCAGCGGCGGTTGCTGCGGCAACAGCAGCAGTGGGCGTGGGAGCTGATAACTCCATCGAGCACTCGGACTACAGAGCCAAACTCAGCCAGATCAGACAGATCTACCACACCGAGCTGGAGAAATACGAGCAGGCGTGCAATGAGTTCACTACACACGTGATGAACCTGCTGAGAGAACAGTCTCGGACCCGACCCATCTCGCCCAAAGAGATCGAGCGCATGGTCAACATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTGAAGCAGAGCACCTGCGAGGCCGTCATGATCCTCAGGTCCCGCTTCCTCGACGCCAGGAGGAAAAGACGTAACTTCAGCAAGCAGGCGACGGAGATCCTCAACGAGTATTTCTACTCTCACCTCAGTAACCCGTATCCCAGCGAGGAGGCCAAAGAGGAGCTGGCCAAGAAGTGCGCCATCACCGTGTCGCAGGTTTCGAACTGGTTCGGTAATAAACGTATCCGCTATAAGAAGAACATCGGTAAATTCCAGGAAGAAGCCAATCTGTACGCAGCGAAGACGGCGGTGACGGCAGCTCAGGCCGTGGCGGCTGCTGTACAGAACAGCCAAAACAACTCGCCCGCAACGCCCAGCTCGGGCTTTCAGATGAAAGATGAAGACTTTCAGTTGGATGCGgcagaagacaaaaataatcTGTTAAACAACATGTTCACTGGTTCTTCAGGTTCGTATAGTTTGCCGGGTTCGGGAGACATGTTTATGAGCATGTCCGGCCTGAACGGATCCTACCAGCCGGCCTCGGTCCCCAACACAGGACAGACACAGGGAGACTCCATACGTCACACCATCGGTCAGTCGTTGGGTTACAGCGACGGCCTGCGGGGAAACCCGCTGTACAGCCCGCACGGACTGAACGGTAACGGCGGCTGGCACGACGCTGTCACTCCGTCTTCTGTGACGTCTCCTATAGAGGGAGCAAACAGCGTTCACTCGGACACCTCTAACTGAACCTTAACTGACCCCGACGATATCTCAGACGAGAACTCAGAGAGACGAGCGAGACTCAGAACCGCTCACTTCGACCAAAAACAGCACCACGTTGCAAAAATCAGCCGAGAGGATTGACGGTACCAGCTTTCTTTCCAAAACTGGCGATACCTCGGTGTCCAACATGTACGATTGTGGAAACATGGGACgctttttttgtcataatctcTGTGAACACCTTGGAacaggttttaaaatatatcacgATTTAAATTTGCTCGTAACTCTTGTCTTTTCGCGCAGTGCAGTATGTTCATTCTTAAAGACGGTTTTTCTCGTGCACatcgatttttttaaattgtatttttaacaacGTCGCCCCTCGTAAATATCGCCGGCCTTTTGGTTTCATTGAGACTCGGGCGTGATTCAGATTGATATGCAGATTCCAGAAGTAAAACGCCATCGATAATGTACAAAGAAATTGATTTTTGGCAATAATGTACCAACTGTTGAGGAACGTATAGCGTATGAAGTGGTTTTATATGCTTCCGCGGAGccgaatattttttttaaggtcaaGATTGGCTTAGAAACTCAATGTTTGCTGGAGGAATCGCACGGAAAGGTTACTTCTGAGACCGTTTGTTCATCTATTGCAGTGACAGATACTTACATAGCTTAtcgaattattttaatacatctcCTACCGTCAACAGGACGATAATGCAGATCGGACATAATAGACATAATCGGCGTGCATACTGTATCTGtacataaaaaaagcttttttgaatGTTATTCTTTTCTTACTCGATACATGTTCACTGATTATTACTTGGCTTCGGTTTTTACGTTCACGGGATCATCTGGGTAGTTTATGATTTGCAGTGAGAggttgtaatatttaaaaagtcttcTAACGTATTAACAGAATTTACACCGAGCAACTCTACGGAGAATAATTCATGTAATGTTATTAGTTTTTGATAAAGGAAATACTTGTGTTTCTGGCccacccccccccaaaaaaagtgtttgaataAACATCTGTAATTCTTAGCGGCTCA

Function

symbol description
pbx3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development; neuron development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in diencephalon; hindbrain; midbrain; spinal cord; and telencephalon. Orthologous to human PBX3 (PBX homeobox 3).

NR:

description
PREDICTED: pre-B-cell leukemia transcription factor 3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09355 PBX1; pre-B-cell leukemia transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238302.1 True 2905 mRNA 0.50 11 31979887 32016468
XM_043238304.1 False 2872 mRNA 0.50 10 31979887 32016465

Neighbor

gene id symbol gene type direction distance location
mvb12ba mvb12ba,mvb12b,LOC107591487,LOC107666228,LOC107654329,LOC107725155,LOC107557586 coding downstream 19039 31943855 ~ 31960848 (-)
lmx1ba lmx1b,lmx1ba,LOC107591520,LOC107668223,LOC107725103,LOC107654328,LOC107557569,LOC105902565 coding downstream 45414 31895803 ~ 31934473 (-)
zbtb43 zbtb43,LOC107715540,LOC107668077,LOC107725105,LOC107654302 coding downstream 114997 31859896 ~ 31864890 (-)
LOC122345662 ralgps1,LOC107666038,LOC107557582,LOC107725136,LOC107654291 coding downstream 122285 31759936 ~ 31857602 (-)
zgc:153704 zgc:153704,LOC107591480,LOC107562205,LOC107725160,LOC107665866,LOC107654290 coding downstream 243936 31733458 ~ 31735951 (-)
ajm1 zmp:0000000794,cunh9orf172,LOC107725135,LOC107666534,LOC107557588,LOC107715543,LOC107654331 coding upstream 33184 32049652 ~ 32067214 (-)
rabl6a rabl6a,LOC108427817,LOC107725084,LOC107667101,LOC105021747 coding upstream 66092 32082560 ~ 32103786 (-)
zgc:73226 zgc:73226,LOC107704030,LOC107725129,LOC107594543,LOC107557574 coding upstream 284891 32301359 ~ 32310140 (-)
LOC122345937 LOC107704040,LOC107557591,LOC107748061,LOC107725130,LOC103139561,LOC102299939,LOC100537556 coding upstream 299219 32315687 ~ 32342744 (-)
ostf1 ostf1,LOC107704065,LOC107748057,LOC107659617 coding upstream 399757 32416225 ~ 32421598 (-)
G41065 NA non-coding downstream 1421 31977714 ~ 31978466 (-)
G41064 NA non-coding downstream 2836 31975936 ~ 31977051 (-)
G41047 NA non-coding downstream 75100 31723742 ~ 31904787 (-)
G41051 NA non-coding downstream 181619 31797709 ~ 31798268 (-)
G41037 NA non-coding downstream 247628 31712351 ~ 31732259 (-)
G41177 NA non-coding upstream 369659 32386127 ~ 32386472 (-)
G41198 NA non-coding upstream 422151 32438619 ~ 32439145 (-)
G41191 NA non-coding upstream 427814 32444282 ~ 32445281 (-)
G41216 NA non-coding upstream 460794 32477262 ~ 32477840 (-)
G41217 NA non-coding upstream 463887 32480355 ~ 32480713 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other downstream 256981 31721270 ~ 31722906 (-)
apooa apoo other downstream 268150 31702453 ~ 31711737 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other downstream 629438 31331349 ~ 31350449 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 1153529 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 1187168 30789633 ~ 30792719 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 97428 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 197563 32214031 ~ 32293782 (-)
LOC122346085 LOC107748069,LOC107679343,LOC107594586 other upstream 267069 32283537 ~ 32314631 (-)
LOC122345737 egflam,LOC107704151,LOC107667876,LOC107725173,LOC107725080,LOC107564362 other upstream 721949 32738417 ~ 32757869 (-)

Expression


Co-expression Network