hs3st1l2 (hs3st1l2,LOC107557106,LOC107741295,LOC107743333,LOC107654638,LOC107663220,LOC107578102)


Basic Information

Item Value
gene id hs3st1l2
gene name hs3st1l2,LOC107557106,LOC107741295,LOC107743333,LOC107654638,LOC107663220,LOC107578102
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12412341 ~ 12428382 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238310.1
atctctgttGTTCattcactcatacacacactccaATCCATCCACACGTAtttgacagacacacacagcatgtaGGCACTTTCTAATTCATTCACCTCCctcgctcacacactcacagtttCTTTTTACAACCTTGAGTCGTATTTTCACTCCTCTCCTGCCTAGAGAGTCTTGAGAAGCAGCTACGCCACCTTAACTTTAAAACCGCCGTCACAGAAAacaggagagagaagagacagcaagaacagaataaaacaaattcattGAAGTGCTCAGAAGGATGGAATAAAGAAGCATGAAAGTCACAAAAACCTCAGAACGAACCACTTTATGAGAGGAACTGACTGAAGGAGACAAAGCTCAGaaattgaCACGAAATCAGTTCCAGCTGtacgtgtgtttgtttgtgtgccgCCCTTGACCTGACTGGACTGACGCCATGTTTTGGACGCTCCTCCTGGCTTTGATCCTACTGCTGTTGCTCCAGGCACAGCTGCTTGTTTGTCTACACGAGCTCCGAGCCTCTCTGACCTCAGTGACTTCGGCGACCCCATCTGTTACTTCCAATGCTTCGGCTTTGCAACGCCTGCCAGGAGCCATAATCATCGGGGTGCGCAAAGGAGGCACCAGGGCCCTCCTAGAGATGCTCAACCTCCATCCAGATGTGGAAGTAGCCAAGAACGAGATCCACTACTTCAACCTGGATGAAAACTTTCGGAAGGGTCTGGACTGGTATCGCGCCCAGATGCCCGTCACTCTCCCCGGGCAGCTGACGGTGGAAAAGACCCCTGGCTACTTCACAGCGCCACTGGCCCCAAAGAGGATATGGGCCACCAATCCAGCTGTGAAACTGCTGCTGATCATCCGTGACCCTGCAGAGAGACTCGTATCAGACTACACACAAGTCCTCCATAACCGCATCCAGCAAAACAAGCCATACCAACCACTCGAAGAGCTGCTGCTGTCTCAAGGACACATCAACCCCAAATACAAGGCCCTCCAGAGAAGCTTTTACTACCAGCACCTTGCCAGATGGTTGGAGCTTTTTCCCAGAGAGCAGATGCACATTGTGGATGGAGAAGCACTTATTAGGAACCCATTCCCTGAGCTGCAGAAGGCGGAGACGTTTTTGGAACTTCCACCTCGGATAAAGCCAGACAACTTCTACTTTAACGTCACTAAGGGCTTTTATTGTATGCTTTCTGCAGGACACGACAAGTGCCTGGATGAATCTAAAGGAAGACCCCATGCACCGCTTAGCAACGAAGCTTTCCAGAAGCTTTGCCGCTACCTGCGAGTTCCCAATCAAATCTTTTTCAGAATGGTGGGACAGAGGTTTGAATGGTGCTAAAGACAGACAGGAAAATGATTGACAGCTCTTATAGAGACTGAGAATGGGATTTAAACTACTGCCGGGAACccattttgtgaaaatgttctAATATTGACAAAGGAATATGGCAGCAACCAGTTTGCAGGAGGGCTAAGCAAAGAGACTAGCACCAAAAATAGTTCTGAACACTGATACACCTACAGTTTGTCTTCTGTGGAAAATAGAATAGATCTGCAGGACttcatatgctttaaaaaaaaaaacagaaaagaaacactTCTAACTCTAAAAGGCTCATTTCAAACAGACTGCTGATTCGGAGGAAATGACATTGAAAAGATTGGAAACGTCCAAGTACTGAAAACGTGAAAACTCCAACAATTGcatataataagaaaaataaaaaataaaatgttacttccCGTGGTACTTgaagcatttaacaaaaatattgctttGCCAGCTGTAATTATTGTAGTCTAAtcatttaattcatgtttaatataCTAATTTgtacttgaatattttattttcgtttttgaatagaaatgtctattttttaaattaattggttCTTTAAATTAATAAGATATTTCATAATGTCTTAAGTTAATGCACTATAAAacttctgttttctatttaataaatatatgtacataagaCATCTCA

Function

symbol description
hs3st1l2 Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Acts upstream of or within cilium assembly. Is expressed in Kupffer's vesicle; forerunner cell group; lateral plate mesoderm; nervous system; and neural tube. Orthologous to human HS3ST1 (heparan sulfate-glucosamine 3-sulfotransferase 1).

NR:

description
PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238310.1 True 2002 mRNA 0.43 2 12412341 12428382

Neighbor

gene id symbol gene type direction distance location
cds2 cds2,LOC107597267,LOC107654641,LOC107741205,LOC107663217 coding downstream 2673 12396282 ~ 12409668 (-)
arhgap25 LOC107741203,LOC107557123,LOC107663229,LOC107654642,LOC107743332,LOC107597266 coding downstream 18299 12381364 ~ 12394042 (-)
LOC122345273 NA coding downstream 48626 12356836 ~ 12363715 (-)
LOC122344659 NA coding downstream 138703 12272217 ~ 12273638 (-)
LOC122345275 LOC107597264,LOC107672815,LOC107742671 coding downstream 215964 12190702 ~ 12196377 (-)
si:dkey-174n20.1 si:dkey-174n20.1,LOC107696056,LOC107741298,LOC108255501,LOC108444311,LOC105893868 coding upstream 82184 12510566 ~ 12513965 (-)
limk2 limk2,LOC107743341,LOC107654635,LOC107696070,LOC107741211 coding upstream 111902 12540284 ~ 12560679 (-)
LOC122345379 NA coding upstream 211995 12640377 ~ 12642522 (-)
cmklr1 LOC107743349,LOC107597353,LOC107654611,LOC107741300,LOC107696054,LOC107595970 coding upstream 214274 12642656 ~ 12644497 (-)
LOC122345863 NA coding upstream 240568 12668950 ~ 12673658 (-)
G35812 arhgap25,LOC107597266,LOC107743332,LOC107654642 non-coding downstream 155529 12255480 ~ 12256812 (-)
G35805 NA non-coding downstream 163633 12226918 ~ 12248708 (-)
G35804 NA non-coding downstream 164832 12228582 ~ 12247509 (-)
G35797 NA non-coding downstream 229362 12181487 ~ 12182979 (-)
LOC122345280 NA non-coding downstream 232591 12179051 ~ 12179750 (-)
G35922 LOC107696053,LOC107654639,LOC107743336,LOC107595973 non-coding upstream 15405 12443787 ~ 12445220 (-)
G35923 NA non-coding upstream 19832 12448214 ~ 12450765 (-)
G35928 NA non-coding upstream 35524 12463906 ~ 12515550 (-)
G35949 NA non-coding upstream 104008 12532390 ~ 12537802 (-)
LOC122345380 NA non-coding upstream 173834 12602216 ~ 12606938 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 92656 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 242931 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 596397 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 759714 11583780 ~ 11652627 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other downstream 945219 11419955 ~ 11467122 (-)
G35936 NA other upstream 73532 12501914 ~ 12505958 (-)
G36047 NA other upstream 625462 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 1150679 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 1225912 13654294 ~ 13699226 (-)
G36298 NA other upstream 1288742 13717124 ~ 13718543 (-)

Expression


Co-expression Network