cdk7 (cdk7,LOC107756278,LOC107720222,LOC107703229,LOC107699696)


Basic Information

Item Value
gene id cdk7
gene name cdk7,LOC107756278,LOC107720222,LOC107703229,LOC107699696
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19217735 ~ 19221166 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238313.1
CCCGGAAATATAAAGTGCTCTTTAATACAGAAGGAAGCGCGACTTCACAAAGAGCAGTTTTTACAGTTGATATCATGGCATTAGATGTGAAGTCCAGAGCGAAGCGCTATGAAaagctggactttcttggagaAGGACAGTTTGCAACTGTGTACAAGGCAAGAGACAAAACCACAAACACCATCGTTGCTATCAAAAAGATAAAAGTGGGGCACAGAACAGAAGCCAAAGATGGCATCAACAGAACAGCCCTTCGAGAGATTAAGTTGTTGCAAGAACTCAGTCACCCGAACATTATTGGCCTCCTGGATGCTTTTGGGCACAAATCCAACATCAGTCTCGTCTTTGATTTCATGGAGACCGATCTCGAGGTCATTATAAAGGACACCAGTCTTGTCCTGACACCAGCCAATATAAAGGCGTACATCCTCATGACGTTACAGGGTCTGGAGTACATGCACAATCACTGGATCCTGCACAGGgatCTAAAACCTAATAATTTGCTGCTGGATGAAAATGGAGTCCTGAAACTGGCTGATTTTGGTTTAGCCAAAGCGTTTGGAAGTCCAAATCGAGTGTATACACATCAGGTTGTTACAAGATGGTATCGTGCCCCAGAGCTGCTCTTCGGTGCCAGGATGTATGGTGTGGGTGTGGACATGTGGGCAGTTGGCTGCATTCTCGCTGAGCTTTTACTCAGAgtgCCATTTTTAGCTGGAGATTCAGACTTGGACCAGCTGACAAAGATATTTGAAGCTTTGGGAACACCGACAGAGGAGACCTGGCCTGGGATGTCTAGTCTTCCGGACTATGTGTCATTTAAGCTGTTTCCTGGCACTCCGTTGGAGCACATCTTCAGCGCAGCTGGCGACGACCTCCTGGAGCTCCTGAAGGGATTATTCACCTTTAACCCCTGCACACGCACTACAGCTTCACAGGCTTTGAAGATGAGGTATTTCAGCAATAGACCAGGACCGACCCCAGGACCTCAGCTTCCCAGACCGAACTCCTCGACAGAAGCCCTGAAGGAGAAAGAAAACCTGTTGATTGGAATCAAGAGAAAACGCGACAGTATTGAACAGGGTACCCTCAAAAAGAAGCTGGTTTTCTGAGTGACTTGGATTCTGTTTTCTTCCACTGGTGCTGCTGCGGTCCTGCGTGAACGATGTGCTATTCAACAGACTTGCGAAGttaacatatttatgtttttgttttcaattatttttttatgtacttcaggaaattaaattatagaaaaatgaaaaa

Function

symbol description
cdk7 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in phosphorylation of RNA polymerase II C-terminal domain and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within phosphorylation. Predicted to be part of transcription factor TFIIK complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Orthologous to human CDK7 (cyclin dependent kinase 7).

NR:

description
PREDICTED: cyclin-dependent kinase 7

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG:

id description
K02202 CDK7; cyclin-dependent kinase 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238313.1 True 1266 mRNA 0.45 12 19217735 19221166

Neighbor

gene id symbol gene type direction distance location
serinc5 serinc5,LOC107756307,LOC107699732,LOC107555497,LOC107703261 coding downstream 996 19196018 ~ 19216739 (-)
homer1b homer1b,LOC107720277,LOC107699726,LOC107555494,LOC107703256,LOC108423652,LOC108255354 coding downstream 61217 19134372 ~ 19156518 (-)
lhfpl2b lhfpl2b,LOC107720278,LOC107587511,LOC107699725,LOC107756302,LOC107555493,LOC107703255 coding downstream 86403 19124324 ~ 19131332 (-)
otpb otpb,otp,LOC107720233,LOC107587559,LOC107555478,LOC108423578 coding downstream 134657 19079743 ~ 19083078 (-)
entr1 LOC107720284,LOC107699695,LOC107587560,LOC107555476,LOC107703226 coding downstream 265000 18949562 ~ 18952735 (-)
LOC122345207 LOC107720271,LOC107699734,LOC107587503,LOC107756310,LOC107703263 coding upstream 76133 19297299 ~ 19313145 (-)
erap2 erap2,LOC107699735,LOC107756311,LOC107703265,LOC107720206 coding upstream 92982 19314148 ~ 19323539 (-)
rgmb rgmb,LOC107555502,LOC107756312,LOC107720270,LOC107699736,LOC107703266,LOC107587502 coding upstream 106986 19328152 ~ 19340602 (-)
si:ch211-117c19.1 LOC107703232,LOC107555504,LOC107756280,LOC108423640,LOC107577894 coding upstream 198716 19419882 ~ 19424139 (-)
mamdc2a mamdc2,LOC107699737,LOC107703267 coding upstream 203032 19424198 ~ 19441113 (-)
G37776 NA non-coding downstream 84591 19132813 ~ 19133144 (-)
G37774 NA non-coding downstream 94427 19123025 ~ 19123308 (-)
G37757 ckmt2b,ckmt2,LOC107720280,LOC107756255 non-coding downstream 141961 19068914 ~ 19075774 (-)
G37637 NA non-coding downstream 403964 18813564 ~ 18813771 (-)
G37571 NA non-coding downstream 826087 18373317 ~ 18391648 (-)
G37792 NA non-coding upstream 3186 19224352 ~ 19225429 (-)
G37799 NA non-coding upstream 60699 19281865 ~ 19282092 (-)
G37800 NA non-coding upstream 61211 19282377 ~ 19282691 (-)
G37801 NA non-coding upstream 65461 19286627 ~ 19286848 (-)
G37877 NA non-coding upstream 284755 19505921 ~ 19510282 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 33757 19175463 ~ 19183978 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 1867355 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 2357804 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 2504568 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 2584614 16596855 ~ 16633121 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 643853 19865019 ~ 19935576 (-)
G38058 NA other upstream 830493 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 904423 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 1173565 20394731 ~ 20396734 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 1684877 20906043 ~ 20936097 (-)

Expression


Co-expression Network