slc6a4b (slc6a4b,LOC107654599,LOC107597334,LOC107595929,LOC107672619,LOC107741230,LOC108434249,LOC106580268)


Basic Information

Item Value
gene id slc6a4b
gene name slc6a4b,LOC107654599,LOC107597334,LOC107595929,LOC107672619,LOC107741230,LOC108434249,LOC106580268
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5898895 ~ 5909991 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238326.1
CTCATTTGATCACAGCTCTCGCGCTCAGGTGGGGGGACTCTCGGTTAAACCTCAAGCCTTTCCTCCCACCAGCAGGGAAATCGAGCACAGCGGCATGCCGCGGTCCCCCGAGAAGCCTCTTTTGAGCGCAACCCGAAACTAAACATTCTCGCTACTTACTTTTTACGCTCGAAAGAAACTCACGGGAGGCATTTCTTGGGCGGCTTATAAGCGCTTCTGCAGTTTGCCAAGTCAAAGGGACCGGCGAAGATGCCCCACCAAGAGCAGGCGCTGGCTCACGGGAGCCTCTGCGCCCCGGGTCCCCCGAACAACGCCGGGTACAACAGCAACCCGGTGCCCGTCATCATCCAGACGGAGTCCCGCGACAAGTGGAgcaaaaaaatggattttcttTTATCGGTCATCGGGTTTGCGGTAGACCTCGGAAATGTTTGGAGATTTCCGTACATCTGTTATCAAAACGGCGGTgGTGCATTTCTTATCCCGTACGTCCTGATGGCCGTGTTTGGCGGGGTGCCACTTTTTTACATGGAGCTAGCTCTGGGACAGTTCCACAGGACAGGTGCCATATCCATATGGAAACACATTTGCCCTATTTTTAAAGGTATTGGTTTCGCCATCTGCATCATTGCACTGTACGTGTCCTTCTACTATAACACCATCATCGCCTGGGCTCTGTTCTACTTCTACTCCTCCTTCAGCAGCACTCTGCCCTGGACCAGCTGTGATAATGAATGGAACACGGAAAACTGCACTAACTACTTCGGGAAAGACAACGTGACCTGGACTAACTACTCACGCTCGCCCGCCGAGGAGTTTTACACGAGGAACGTCCTCGCGGTCCACGAATCGTCCGGGCTTGGGGATGTGGGATACATTCGCTGGCAGCTCATGCTTTGCCTCTTCCTCATCTTCACCATCGTCTACTTCAGCCTGTGGAAAGGAGTCAAGACTTCAGGAAAGGTAGTGTGGGTGACTGCCACCCTCCCGTACGTGGTGCTTCTCATCCTCATGATCCGTGGTGCAACTTTGCCAGGAGCCTGGAAAGGAGTGGTGTTCTACCTCAATCCCAAATGGGAGAAACTGAAGGAGACTAGCGTATGGGTGGATGCAGCCGCGCAGATCTTCTTCTCTCTCGGTCCAGGTTTTGGTGTTCTGCTCGCTCTGTCCAGCTACAATCCCTTCAACAACAACTGCTACAGAGATGCTATTGTAACCAGTCTGGTGAACTGCCTGACAAGTTTCGTGTCAGGGTTTGTTATTTTCACCGTCCTGGGATATATGGCCGAACAGAGAAACGTAAACGTCGAGGATGTCGCCAGGGACAAAGGACCCAGCCTGCTCTTCATCACATATCCAGAAGCCATTGCAAACATGGTTGGGTCGACTTTCTTTGCCATCATCTTCTTTGTGATGATGATTACTCTTGGACTGGACAGCACGTTTGGGGGACTAGAGGCCATAATCACAGCTGTGATGGATGAGTATCCAGACACACTGTCCCATCGGAGAGAGCTGTTTGTTCTTGGCCTGGTGGTTGTTTGCTTTTTGGGCTCTCTCAGCACCCTTACTAAAGGTGGTGCATATGTGGTAAAGTTACTAGAAGAATTTGGAGTTGGTTCTTCAATTATAGCTATAGTCTTTCTGGAGGCCACAGCGGTATCCTGGTTTTACGGTATTAACAGATTCAGCAATGATATTAAATCAATGTTGGGCTATACACCAGGGCTCTACTGGAAAGTGTGTTGGGTCGCCATCAGCCCAGCTTTTCTCGCTTACATCATTATCAGCTCACTGTTGAACCCTCAGCCCCTCTCACTATTCGACTACGAGTTCCCAGACTGGAGCATCACGGTCGGTTACATCATTGGAGCTTCCTCCTTCATATGGATCCCCATCTACATGGTGTACAAGCTTGTGTGGACCCCAGGCTCTCTTAAACAGCGCCTTGCTGTGTGTCTGCGACCAGAGAGAACGCTGCCAGACATCCACGCAGACAGTATGGGGTTAAGTCCTGTACCATAGACCACTGAGAGAAAAACATCTGAACACAACTCACTTAAAAAGGCCCGCAAACGCTGGGTTACATGCGCCCGCAACCAACTGAGCAACTTTTGCATAGTTTTAGGGATTTGTCCAGTTGAAATATAAAGAAAAGCTATCTACTCAAAAGCGACGTACGATTAgattaaatcagaaaaaagaaagcattcagTGTAAACTATAATCGTTCATTAAATAACCCGTGCAATCTACAAACGGTcgatgttttcatttaaagtttatGTATAAGATGAAGAGTTCAGTGGTATTTTTTACATCGTAAGTCGTACGTACCCTccgatgtttttaaaatacatgcaagTGAGATTACCTCATTGTGAGAGATTCAGCCAATGAGAACTTCATACACATTTCTCActcatttttcagaaataactGTTGTCGAGATTGAATCATTATGGTGTTTTTCTGCCTTAACTCTGACTAAATATTGTAGCTACTTTATGTTAAAACTTTGTAAAACCTGTATTGATATCGTGCCTCACCgagaaaaggacaaaaagacaaaaacaagggTTTCTTCGGAACGAACACTACATGACTGTTTGAAGTTTTCATTCTCTAACGAAACTTGAGCCCCCGATCCTATCTACGTGTGACGTGTTCATTTTCCTTCCCgctgtatttttgttcttcCCCCGAATAAAGAACTGAGGATGTTGCTGAACTCTGGATGTGACCAAATATTAAATTGCTATGAATGTCTTATTATGGATAGTTCAAAACGTGGTTCATATACTATGTCTGCACTGTAGGTTGTGGCAGAGAGTTTTTGCTTGTGTGTACGTCTGGAAAATTAATAAAGCTGTACCGAACATTCCTA

Function

symbol description
slc6a4b Predicted to enable serotonin binding activity and serotonin:sodium symporter activity. Predicted to be involved in serotonin uptake and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in several diseases, including alcohol use disorder; alexithymia; anxiety disorder (multiple); heart disease (multiple); and mental depression (multiple). Orthologous to human SLC6A4 (solute carrier family 6 member 4).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0006837 serotonin transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05037 SLC6A4, SERT; solute carrier family 6 (neurotransmitter transporter, serotonin) member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238326.1 True 2887 mRNA 0.47 13 5898895 5909991

Neighbor

gene id symbol gene type direction distance location
git2a git2,git2a,LOC107595928,LOC107752141,LOC107597287 coding downstream 14731 5859279 ~ 5884164 (-)
gltpa gltpa,gltp,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 49256 5843678 ~ 5849639 (-)
trpv4 trpv4,LOC107752140,LOC107741238,LOC107654595,LOC107672638 coding downstream 55898 5820352 ~ 5842997 (-)
mmab LOC107752154,LOC107597358,LOC107654603,LOC107672637,LOC107741242,LOC107595926 coding downstream 227766 5668793 ~ 5671129 (-)
kctd10 kctd10,LOC107597295,LOC107595924,LOC107672630,LOC107752136 coding downstream 245866 5648255 ~ 5653029 (-)
trnak-uuu_104 NA coding upstream 46308 5956299 ~ 5956371 (-)
foxd1 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 coding upstream 176810 6086801 ~ 6089556 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107596806,LOC107718646,LOC107700928,LOC107596181 coding upstream 186166 6096157 ~ 6099701 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861,LOC107700930,LOC107596864 coding upstream 322275 6232266 ~ 6243818 (-)
gfm2 gfm2 coding upstream 345427 6255418 ~ 6263302 (-)
G33533 NA non-coding downstream 1542 5896128 ~ 5897353 (-)
G33446 NA non-coding downstream 214611 5679683 ~ 5684284 (-)
G33434 NA non-coding downstream 244131 5654080 ~ 5654764 (-)
G33423 acacb,LOC107752147,LOC107654593 non-coding downstream 278190 5618265 ~ 5620705 (-)
G33409 LOC107684993,LOC107597297,LOC106585658 non-coding downstream 296691 5601409 ~ 5602204 (-)
G33542 NA non-coding upstream 35998 5945989 ~ 5946874 (-)
G33544 NA non-coding upstream 43285 5953276 ~ 5959213 (-)
G33549 NA non-coding upstream 59251 5969242 ~ 5982803 (-)
G33610 NA non-coding upstream 262153 6172144 ~ 6172412 (-)
G33612 NA non-coding upstream 263856 6173847 ~ 6174113 (-)
G33175 NA other downstream 1275837 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 1705814 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 2000317 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 2146131 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 2938718 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 914180 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 1012855 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1472355 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 1796979 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 1808574 7718565 ~ 7721758 (-)

Expression


Co-expression Network