steep1 (zgc:103697,cunhxorf56,LOC107548454,LOC107655899,LOC101478835)


Basic Information

Item Value
gene id steep1
gene name zgc:103697,cunhxorf56,LOC107548454,LOC107655899,LOC101478835
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13151621 ~ 13157237 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238327.1
CAGAAACGATCGACGTCATCACCGGGCGACAACAGGGGAGTAAACAAGCCTGAAAACGCACCTCACGTtttgaacttaaaaataaagtaaaggaAGGTTAAATATGCCCAAAGTAGTGTCTCGGAGTGTGGTGTGCTCGGACACCCGTGACAGGGAGGAGTATGACGACGGGGAGAAACCCCTGCACGTGTATTACTGTCTGTGTGGTCAGATGGTCCTTGTTCTGGATTGTCAGATAGAGAAATTACCCATGAGACCACGGGACAAAGCCAGAGTGATTGATGCAGCAAAACACGCCCACAAGTTCTGCAATGTGGAGGAAGATGAGACGGTGTACTtgaaaagGTCAGAGGGCATCGAAAGACAGTTTCGCAAAAAATGTGGGAAATGTGGTCTTCTCTTGTTCTATCAGCATCAGATGAAAAGCACTCCAGCGACGTTCATCGTGGATGGCGCGCTGGTGAAGTTCGGCCAGGGATTTGGCAACACAAGCGTATACAGCCAGAAACAAGAGACGCCAAAGAAAGTCAGGGTTATGATGACAAAACGCACCAAAGACATGGGCAAGTTCAGCTCTGTTACTGTTTCAACGATcgatgaagaagaggaagagattGAAGCGCGGGAGGTAGCGGATTCTTATGCCCAGAATGCCAAAGTGATTGAGAAACAGCTGGAAAGGAAAGGAATGAGCAAGAGACGACTACAGGAACTGGCTGAGCTTGAGGCGAAGAAAGCCAAGATGAAGGGAACTCTCATTGACAACCAGTTCAAATGAAGAATTTGTGTTAATGAGACAGCGACAGAGCAAATGAATAAGTTGTCTACATGACGCTACtggagagtgtgtgtatttgtgcagTTGAAGTGTATGAAGGGAGGaaaaggccttttttttttttttttttttttacagatttatttaaatgttaaaaatgattttcatgctatttttcattcaataaaAAACAACCGAATTTTA

Function

symbol description
zgc:103697 Predicted to be involved in endoplasmic reticulum membrane organization and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in cell body; cytoplasm; and nucleus. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 107. Orthologous to human STEEP1 (STING1 ER exit protein 1).

NR:

description
PREDICTED: UPF0428 protein CXorf56 homolog

GO: NA

KEGG:

id description
K24996 STEEP1; STING ER exit protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238327.1 True 982 mRNA 0.44 7 13151621 13157237

Neighbor

gene id symbol gene type direction distance location
stard8 LOC107757534,LOC107596160,LOC107548495,LOC107746344,LOC107700913 coding upstream 44049 13066436 ~ 13107572 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533,LOC107596161,LOC107655918 coding upstream 95261 13051667 ~ 13056360 (+)
ar ar,LOC107757532,LOC107596701 coding upstream 128848 12965936 ~ 13022773 (+)
ch25hl3 LOC107700893,LOC107718661,LOC107597898,LOC107596167,LOC107655924,LOC107757531,LOC100005337 coding upstream 216469 12930223 ~ 12935152 (+)
erlin2 erlin2,LOC107655923,LOC108443303,LOC107718651,LOC107596165,LOC107700919,LOC107757530 coding upstream 225123 12916170 ~ 12926498 (+)
nalf2 fam155b,LOC107548493,LOC107746345,LOC107655916,LOC107596158,LOC107757536 coding downstream 177518 13334755 ~ 13338138 (+)
eda eda coding downstream 184909 13342146 ~ 13372469 (+)
wnt11f2 wnt11,LOC107746349,LOC107548453,LOC107655896,LOC107596154,LOC107757514,LOC107700898 coding downstream 219300 13376537 ~ 13379768 (+)
igbp1 LOC107746347,LOC107700909,LOC107548490,LOC107655913,LOC107757539 coding downstream 225975 13383212 ~ 13387955 (+)
micu2 LOC107700905,LOC107746354,LOC107596152,LOC107655910,LOC107757544,LOC107548488 coding downstream 255383 13412620 ~ 13418968 (+)
G36062 NA non-coding upstream 42768 13108632 ~ 13108853 (+)
G35905 NA non-coding upstream 265687 12885331 ~ 12885934 (+)
G35904 NA non-coding upstream 266337 12885005 ~ 12885284 (+)
G35903 NA non-coding upstream 269109 12882260 ~ 12882512 (+)
G35847 NA non-coding upstream 383071 12767948 ~ 12768550 (+)
LOC122345423 NA non-coding downstream 142518 13299755 ~ 13312652 (+)
G36109 NA non-coding downstream 166796 13324033 ~ 13324383 (+)
G36140 NA non-coding downstream 362736 13519973 ~ 13521608 (+)
G36141 NA non-coding downstream 409740 13566977 ~ 13580798 (+)
G36168 NA non-coding downstream 490689 13647926 ~ 13648538 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 344270 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 446376 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 622831 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 895949 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1208511 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 826860 13984097 ~ 13985706 (+)
G36495 NA other downstream 1133183 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 1142806 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 1175786 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 1190325 14347562 ~ 14349991 (+)

Expression


Co-expression Network