sox19a (sox19a,LOC107687705,LOC107744453,LOC107726363,LOC107672743,LOC107599979,LOC107592398)


Basic Information

Item Value
gene id sox19a
gene name sox19a,LOC107687705,LOC107744453,LOC107726363,LOC107672743,LOC107599979,LOC107592398
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10946115 ~ 10948415 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238332.1
ACAGTGATGAAATTCTATTATCACTCAAGCACTGAAAGAGTCGCTGGCAGGACGCACAGAGAGTTCAGCTCGGACCTGTTTCGCTTTTAAGGCGAACTAACGTCATTTCAGAACTTGTTGATAGTCTTTAGGCGTATACAAACACTTTGGCTGTAGTTGCAATCAGTTCGCTCTCGTCTTTTGGACTTATGCGTCCAGAGCACAACGCGTAAACGTTTACCTTCGCGGGCACTGAAAGTCAGCGGATTTGATTTTAAGTTCGTTAGTAGTTTACGGTGATACTTAAGTATCACCACCGACTTCTGTGGTCAGCCATGTACAGCATGCTGGAACACGACATGAAATCCGCCGTGCCACCGACGCACCAGAGCGCACAGGGGATGACCCAGCTGAACGGTGGAGTGACGCACGGAGCCGCTAAAGCGGCTGTCAACAACCAACAACAGAGTAGCGATCCTATGGACAAAGTTAAGAGGCCCATGAACGCGTTCATGGTCTGGTCTCGGGGTCAGAGGCGCAAAATGGCACAGGAGAACCCCAAAATGCACAACTCTGAGATCAGCAAGCGCCTGGGCGCCGAGTGGAAGCTGCTTACGGACGCGGAGAAACGCCCGTTTATCGACGAGGCCAAGCGGCTCCGCGCGCTGCACATGAAGGAATACCCAGATTACAAATACAAGCCACGACGTAAAACAAAACCCGTGCTGAAGAAGGACAACCCCGCCGCTAAGTATCCCCTATCGGCCGGCAACTTACTGGCGGCGGCCGCGGCTCAGGGGTCGGGTGGGAGCCCGAGGATGGACAGCTACGGCTGGGGTCACACAGGTGGCTACACCGGCATGCAGACGGACGCTCTGGGCTACAGTCAGCAGCTGCACCGCTACGACCTGTCCGCCCTACAGTATCCATCCGCCATGGCCACCGCGCAGACCTACATGAACGGTGCCAACTCCTACAACCCCATGTCTTACAGCAGCACTCCCCAGCAGCCCAGCCCAGTCATGTCCATGGTGAAACCGGACCAGGTGTCTCACTCTCCCACCGGAGCTCACAGCCACCAGCGGGGTCCTTTACAAGGAGACCTGAGAGACATGATTAGCATGTATATCCCTGGTGGAGACACCACAGACAGTGGAGCACAGAGGGGCTATTCCAACATCCAACAGCATTACCTCACCGGTACAGCACCTCTCACTCACATCTGATCAGGAAACTGTTATTATATCTTCCTATTTCCGGTCTGGAGGGCCACCGGTGTTGGTTGTAGTCGTGTGAACATTAACttgatatgtaaaaaaaaaggagggtGCGTGGACACATGGCCGAACTGGAATCCCAAGGCAGCTGGACTTCTGGCCTTGTTGAAGTGCCTCAGATTACCCCTTTccgtcacatttttttttcttctttgaggTCCATGTCTTTGTTTTCTGCATAATGTCAGTGGGGCCTGGTGCACTGTTGTTGGAATCGCTCATTGTAGTAACACggcacatttattattttttgtaaccgACTAGCCGAACGGTTGATTGCTGCTCATTATTTGCGCAGTCAACTAGCTAGTTTCATTTCTCACAGACTACTGACTTTAAAGACATGGCTGTAAAcgctaaatagaaaaaaagggAACGGAGCACACATTCCCTCAGTCGCTGCTTGTCCTGATGTTCGAAACACCTCAGAATGAATCTCCCAAGTTTTACTTTTAAGCTTTCATACCATAAGACTTTGTAACATTGTGCTGCTCTTCACTGTTTTAggtaatgcaaaaatatgaaatgcacaACGGTTTAGACATTTTTGTTAGTGTAGATATACGCCCTGAGCttcaacagatttttttgtcgcattaaaaagtgaaaatgaaatagAGATCCCGCTTAGAGGGATTTGactgtattttctattaaaaaaagaacaattaattCTCAACTCCTTTGAGAAATAGAACTTTGTTAATAGaagtgttttttgtaaaaaaaaaaagggagagtCAAAACGTTTTGaataatgttcattaaaaaCGAAAACTTTATGAGCTTGTTAAAAGACTGTTTGACTGAGAATgtattgtgaaatgtttcttttttacttttaagccCTTATAGTAAGGGTTAATAATCTTGTATGTGACTTGACAACCTTgatagaaaaacaacaaaaaaaatgtaataaagtattttattatttttgta

Function

symbol description
sox19a Contributes to DNA-binding transcription factor activity. Acts upstream of or within positive regulation of DNA-binding transcription factor activity. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Is expressed in several structures, including blastomere; central nervous system; neural rod; presumptive diencephalon; and presumptive structure. Orthologous to human SOX15 (SRY-box transcription factor 15).

NR:

description
PREDICTED: transcription factor Sox-19a-like

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238332.1 True 2198 mRNA 0.46 2 10946115 10948415

Neighbor

gene id symbol gene type direction distance location
eif4a1b eif4a1b,if4a1,LOC107599941,LOC107592294,LOC107726387,LOC107687701,LOC108443969,LOC106560692 coding upstream 4472 10934545 ~ 10941643 (+)
plscr3a plscr3a,LOC107744496,LOC107599978,LOC107687706,LOC107592298,LOC107726366 coding upstream 20085 10922870 ~ 10926030 (+)
phf23a phf23a,LOC107599938,LOC107744450,LOC107687682,LOC107726379,LOC107592297,LOC107672758 coding upstream 23333 10918773 ~ 10922782 (+)
si:ch211-137i24.12 LOC107744495,LOC107687707,LOC107599977 coding upstream 37758 10904934 ~ 10908357 (+)
znf703 znf703,LOC107599934,LOC107687685,LOC107744445,LOC107726392,LOC107672788,LOC107592299 coding upstream 72023 10870338 ~ 10874092 (+)
tm4sf21a si:ch211-137i24.10,LOC107687679,LOC107744498,LOC107672738,LOC107726377,LOC107599980 coding downstream 11925 10960340 ~ 10963604 (+)
mrps31 NA coding downstream 21087 10969502 ~ 10972314 (+)
capga capga,LOC107599981,LOC107687675,LOC107744500,LOC107726365,LOC107592395,LOC107672725 coding downstream 33172 10981587 ~ 10986048 (+)
si:ch211-114c12.5 LOC107592362,LOC107726358,LOC107744476,LOC107599968,LOC107672711 coding downstream 38490 10986905 ~ 10992885 (+)
pdha1a pdha1a,LOC107599948,LOC107672749,LOC107592287,LOC107726384 coding downstream 71906 11020321 ~ 11028005 (+)
G35202 NA non-coding upstream 107748 10838012 ~ 10838367 (+)
G35197 NA non-coding upstream 129814 10813457 ~ 10816301 (+)
G35081 NA non-coding upstream 398490 10547221 ~ 10547625 (+)
G35043 NA non-coding upstream 612307 10333219 ~ 10333808 (+)
G35042 NA non-coding upstream 615793 10329889 ~ 10330322 (+)
G35267 NA non-coding downstream 238839 11187254 ~ 11187694 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding downstream 256085 11204500 ~ 11209405 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding downstream 434255 11382670 ~ 11387170 (+)
G35309 NA non-coding downstream 457113 11405528 ~ 11405761 (+)
G35311 NA non-coding downstream 465626 11414041 ~ 11414688 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 12362 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 210056 10717531 ~ 10736059 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 806382 10064217 ~ 10139733 (+)
si:ch211-102c2.4 NA other upstream 1146757 9796381 ~ 9799358 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 2074597 8864202 ~ 8871518 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 98064 11046479 ~ 11064446 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other downstream 187808 11136223 ~ 11150225 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 318227 11266642 ~ 11303431 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 690101 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 975813 11924228 ~ 11943110 (+)

Expression


Co-expression Network