prdm8b (prdm8,prdm8b,LOC107744860,LOC107746783,LOC107661225,LOC107663390)


Basic Information

Item Value
gene id prdm8b
gene name prdm8,prdm8b,LOC107744860,LOC107746783,LOC107661225,LOC107663390
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14630922 ~ 14635776 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238345.1
TCATTGGGCAGATTATGTGCAGCAAACAAAAAGTGTGTATGTGGGTGCCACTCAGTCAGTGTATCGGCCCCATCTGCACGCCTCTCTGCGCTCGCGAATCATAAGACGGTCGGCAACACTGTCACTTTCAACAGACGGGGAAATGTACTGACTGCACGGACTTCGTCGGAGACGCCGAACACATACTTGAAGATATATTGACGGCAATCGTGAAGCCTTGTGGATTATTTTATCCTAGCACCATGCAAATGATGGAGGAATCCAGTTCGCAGAGACTGGGCTGGGACGGCGACGCGAAAGCGATGCAGCAGTGTTTAACGGATATATTCACCAGCGTGTACACCACCTGTGACATCCCGGAAAATGCCATTTTCGGCCCATGTGTTCTGAGTCACACTTCACTGTATGACAGCATCGCCTTCATCGCTCTCAAGTCCACAGACAAACGAACGGCGCCTTACATATTCAGGGTGGACACCTCAGCTGCCAACAGTTCCTCGGAAGGCCTGATGTGGCTGAGGCTGGTTCAGTCGGCGCGAGACAGAGATGAACAGAACCTAGAGGCCTATGTGAAGAACGGCCAGCTTTTCTACAGGTCGCTGAGGAGAATAGAGAAAGATGAAGAGCTGTTGGTGTGGTATGGCAAGGATCTCATTGAACTGCTGCTGCTCAGCCCTGGCAGAAATCAAACCAAAAGTAAAGGTACGTCGCCCTTTTTGTGCCCAGACTGTAGCCAGCGTTTCCAGTTCGAATTTCCCTTTTTGGCTCATTTAAGATTCCGCTGCACTAAGAGACTACAAAGCATGGCCAGCCCAGAGGAGGAGGCCACGGATGCCAGTGACCAGGCTAGTCTACCTCCTGCCAGGTCCAGTCCCAAACTGGGCCGATCTGACGGCTTCTCCAATCCACAGGAAGGAAAGCCGTCCACAGACTTCCACAATCTAGCCAGGGATTTGGAGAATAACAGAACCAGTCCGCCGAGCGACAAAGAGGCCGAGATACTAAGCGAGAACTCTGGAAAGCGCAAGTTCTCTGACATGGAGGACAGCAGGAACAGTGGATTATCTCAGCCTCCCAAGTCCAAAGAGGAGTTGGCCAACTCGGCGCAGCAGTACCGTGGAGCGTACGGTCTGGACGAGAGCAGGCGGGCTTTCTCGCCTTCTGTTTCGGAGTCGACGGAAACCAAGAGGAGCGCCTTCACCGAGGTCAAGAAGTCACCCCAGAGCTTGAAGCACAGCGGTAAAAACTCCAGCTCCAACTCGGAGAACAAGGAGGCTGGCCGGCCCAGCAACACGGCTGAAAAGCACCTCAACATCAGACAGGTTCTGAGCGAGACGCAGCCCCCGCAATCCCGAATGGAGACCTCATCAATTGGCAGCGCTTTCACTTCGGTGCCCCAGCAGGGAGGTGGAGGCTCGGAGAGAAAGAGTGCCTTTAGCCAGCCGTCTCGCACCTTCTCGCAGCTATCACCTCTTGTCATGGCACCCAAGCTTCTGCCGGCAGTTGACTGCCATCCTGCGGTGGGCGACACCGTCTCTTCCAATAGACTCTACCAAGCGGACCACCTCGCCGCGAAGCTCCAAGGCTCTGAACTAGGCAGCAACTGCCCCGTGCCGGGTGGCATTGCGAAACAGAACCCTTTCCTATACGCCACAGCCTTCTGGCCCAAGACCTCAGGCCCCATCCAGCTGCAAATGCCCTCTGCTCTCACGCTCCTGCCACCTTCGTTTACCTCCCTTTGTCTGCCTGCCCAGAACTGGTGTGCCAAATGCAATGCCTCCTTCcgcatgacctctgacctggtCTACCACATGCGCTCGCATCACAAAAAGGAGTATGCCATGGAACCTCTTgttaaaagaagaagagaagaaaagttAAAGTGTCCAATCTGTAACGAGTCTTTCAGGGAGCGGCACCACCTTTCCCGGCACATGACTTCTCACAACTGAATTTTTGgggatttatttgtttttcattctttccttcctcctttcttttttcttgcattttttttttaaatcaaaagggAATAAGGTTAATCTGGAGGAGTAATGCCAACACGTTTGCTCTCATTTTCAAAAGACATTACTGTTTAAATGGTTTGATTTCTTCAAATGTCACGTTTTGTGTATGAAGATGCATTTTGACTTAAAAAcctaaaatctatttattatatgaagcacttattatttgaaaaaaagggGACAATGATAATGTAAGTGTACCTtgaattttgtatatattaatgtataatgtatagaAATCAATTCAGATGCAGATCATTTCATTGAACGTTATTCAATGACATGTTATGTCTATATGCATAAGGATATCGAACATTGGGAACATGATGTTGAAGTGTATTTAAGAGTGCATGTAAATTATAGCTATTGGTATAAGATGCAGTTTATTCGAAATAATGTAAAtacttgttttgtttgaatACAAAGTGTAATATTTTGTGTCTGTGAGAAATAGATTCAGTGTTTCTTCCTTTTACTGAAATTTACTATTTGATAGTTTATCTAATCATGTTGAATGCTTTGACaataaaatagctttattttCAA
>XM_043238346.1
ACTAGCTAACTGTCGGCGACCGAAGAGTTAAAGGGAGGAGACGAAGCGTGTCACGCCTCATTGGGCAGATTATGTGCAGCAAACAAAAAGTGTGTATGTGGGTGCCACTCAGTCAGTGTATCGGCCCCATCTGCACGCCTCTCTGCGCTCGCGAATCATAAGACGGTCGGCAACACTGTCACTTTCAACAGACGGGGAAATGTACTGACTGCACGGACTTCGTCGGAGACGCCGAACACATACTTGAAGATATATTGACGGCAATCGTGAAGCCTTGTGGATTATTTTATCCTAGCACCATGCAAATGATGGAGGAATCCAGTTCGCAGAGACTGGGCTGGGACGGCGACGCGAAAGCGATGCAGCAGTGTTTAACGGATATATTCACCAGCGTGTACACCACCTGTGACATCCCGGAAAATGCCATTTTCGGCCCATGTGTTCTGAGTCACACTTCACTGTATGACAGCATCGCCTTCATCGCTCTCAAGTCCACAGACAAACGAACGGCGCCTTACATATTCAGGGTGGACACCTCAGCTGCCAACAGTTCCTCGGAAGGCCTGATGTGGCTGAGGCTGGTTCAGTCGGCGCGAGACAGAGATGAACAGAACCTAGAGGCCTATGTGAAGAACGGCCAGCTTTTCTACAGGTCGCTGAGGAGAATAGAGAAAGATGAAGAGCTGTTGGTGTGGTATGGCAAGGATCTCATTGAACTGCTGCTGCTCAGCCCTGGCAGAAATCAAACCAAAAGTACGTCGCCCTTTTTGTGCCCAGACTGTAGCCAGCGTTTCCAGTTCGAATTTCCCTTTTTGGCTCATTTAAGATTCCGCTGCACTAAGAGACTACAAAGCATGGCCAGCCCAGAGGAGGAGGCCACGGATGCCAGTGACCAGGCTAGTCTACCTCCTGCCAGGTCCAGTCCCAAACTGGGCCGATCTGACGGCTTCTCCAATCCACAGGAAGGAAAGCCGTCCACAGACTTCCACAATCTAGCCAGGGATTTGGAGAATAACAGAACCAGTCCGCCGAGCGACAAAGAGGCCGAGATACTAAGCGAGAACTCTGGAAAGCGCAAGTTCTCTGACATGGAGGACAGCAGGAACAGTGGATTATCTCAGCCTCCCAAGTCCAAAGAGGAGTTGGCCAACTCGGCGCAGCAGTACCGTGGAGCGTACGGTCTGGACGAGAGCAGGCGGGCTTTCTCGCCTTCTGTTTCGGAGTCGACGGAAACCAAGAGGAGCGCCTTCACCGAGGTCAAGAAGTCACCCCAGAGCTTGAAGCACAGCGGTAAAAACTCCAGCTCCAACTCGGAGAACAAGGAGGCTGGCCGGCCCAGCAACACGGCTGAAAAGCACCTCAACATCAGACAGGTTCTGAGCGAGACGCAGCCCCCGCAATCCCGAATGGAGACCTCATCAATTGGCAGCGCTTTCACTTCGGTGCCCCAGCAGGGAGGTGGAGGCTCGGAGAGAAAGAGTGCCTTTAGCCAGCCGTCTCGCACCTTCTCGCAGCTATCACCTCTTGTCATGGCACCCAAGCTTCTGCCGGCAGTTGACTGCCATCCTGCGGTGGGCGACACCGTCTCTTCCAATAGACTCTACCAAGCGGACCACCTCGCCGCGAAGCTCCAAGGCTCTGAACTAGGCAGCAACTGCCCCGTGCCGGGTGGCATTGCGAAACAGAACCCTTTCCTATACGCCACAGCCTTCTGGCCCAAGACCTCAGGCCCCATCCAGCTGCAAATGCCCTCTGCTCTCACGCTCCTGCCACCTTCGTTTACCTCCCTTTGTCTGCCTGCCCAGAACTGGTGTGCCAAATGCAATGCCTCCTTCcgcatgacctctgacctggtCTACCACATGCGCTCGCATCACAAAAAGGAGTATGCCATGGAACCTCTTgttaaaagaagaagagaagaaaagttAAAGTGTCCAATCTGTAACGAGTCTTTCAGGGAGCGGCACCACCTTTCCCGGCACATGACTTCTCACAACTGAATTTTTGgggatttatttgtttttcattctttccttcctcctttcttttttcttgcattttttttttaaatcaaaagggAATAAGGTTAATCTGGAGGAGTAATGCCAACACGTTTGCTCTCATTTTCAAAAGACATTACTGTTTAAATGGTTTGATTTCTTCAAATGTCACGTTTTGTGTATGAAGATGCATTTTGACTTAAAAAcctaaaatctatttattatatgaagcacttattatttgaaaaaaagggGACAATGATAATGTAAGTGTACCTtgaattttgtatatattaatgtataatgtatagaAATCAATTCAGATGCAGATCATTTCATTGAACGTTATTCAATGACATGTTATGTCTATATGCATAAGGATATCGAACATTGGGAACATGATGTTGAAGTGTATTTAAGAGTGCATGTAAATTATAGCTATTGGTATAAGATGCAGTTTATTCGAAATAATGTAAAtacttgttttgtttgaatACAAAGTGTAATATTTTGTGTCTGTGAGAAATAGATTCAGTGTTTCTTCCTTTTACTGAAATTTACTATTTGATAGTTTATCTAATCATGTTGAATGCTTTGACaataaaatagctttattttCAA

Function

symbol description
prdm8 Predicted to enable metal ion binding activity. Predicted to be involved in oligodendrocyte development and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in nervous system; neural plate; and neural tube. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 10. Orthologous to several human genes including ZNF488 (zinc finger protein 488).
prdm8b Predicted to enable metal ion binding activity. Predicted to be involved in oligodendrocyte development and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in adaxial cell and nervous system. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 10. Orthologous to human PRDM8 (PR/SET domain 8).

NR:

description
PR domain zinc finger protein 8

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K20797 PRDM8; PR domain zinc finger protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238345.1 False 2573 mRNA 0.48 4 14630979 14635776
XM_043238346.1 True 2624 mRNA 0.48 4 14630922 14635776

Neighbor

gene id symbol gene type direction distance location
bmp2k bmp2k,LOC107752364,LOC107746780,LOC107599185,LOC107661221 coding upstream 137451 14466508 ~ 14493471 (+)
LOC122345511 LOC107663395,LOC107599216,LOC107567471,LOC107752366,LOC107752365,LOC107661220 coding upstream 167201 14459454 ~ 14463721 (+)
LOC122345512 LOC107752366,LOC107661220,LOC107663395,LOC107599216,LOC107663363,LOC107746851 coding upstream 172008 14455417 ~ 14458914 (+)
fras1 fras1,LOC107663364,LOC107661219,LOC107752371,LOC107746850 coding upstream 175638 14385667 ~ 14455284 (+)
LOC122344908 LOC107599196,LOC107663386 coding upstream 304155 14324343 ~ 14326767 (+)
cfap299 si:ch211-57h10.1,LOC107602013,LOC107599193,LOC107746788,LOC107663380,LOC107661266 coding downstream 18825 14654601 ~ 14699071 (+)
bmp3 LOC107663379,LOC107599191,LOC107746787,LOC107744876 coding downstream 65128 14700904 ~ 14706295 (+)
tmem175 LOC107746789,LOC107663387,LOC107599180,LOC107661229,LOC107744865,LOC107602030 coding downstream 155090 14790866 ~ 14794659 (+)
cspg4ba si:dkey-193c22.2,LOC107746793,LOC107681276,LOC107744873,LOC107599179,LOC107602029 coding downstream 245099 14880875 ~ 14898825 (+)
arl15a arl15a,LOC107599176,LOC107681238,LOC107746795,LOC107661232,LOC107602028,LOC107708616 coding downstream 285796 14921572 ~ 14999417 (+)
G36570 NA non-coding upstream 101989 14493548 ~ 14528933 (+)
G36573 NA non-coding upstream 164681 14465899 ~ 14466241 (+)
G36510 NA non-coding upstream 284087 14345884 ~ 14346835 (+)
G36509 LOC107567468,LOC107752360,LOC107661217 non-coding upstream 287153 14343164 ~ 14343769 (+)
G36507 LOC107663397,LOC107567468,LOC107599188,LOC107746779 non-coding upstream 288415 14341923 ~ 14342507 (+)
G36644 NA non-coding downstream 91453 14727229 ~ 14727743 (+)
G36653 NA non-coding downstream 142185 14777961 ~ 14778375 (+)
G36651 wdfy3,LOC107681281,LOC107661255,LOC107744871,LOC107599213 non-coding downstream 176697 14812473 ~ 14815463 (+)
G36657 NA non-coding downstream 181963 14817739 ~ 14818269 (+)
G36692 hspb3,LOC107746796,LOC107599178,LOC107744878,LOC107602000 non-coding downstream 283179 14918955 ~ 14919941 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 280931 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 293157 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 325618 14300043 ~ 14305304 (+)
G36495 NA other upstream 338422 14290420 ~ 14292500 (+)
ins ins,LOC107596207 other upstream 645216 13984097 ~ 13985706 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other downstream 10169 14645945 ~ 14652911 (+)
G36640 NA other downstream 82756 14718532 ~ 14720487 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 1756021 16391797 ~ 16395562 (+)
G37227 NA other downstream 1838932 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 1850844 16486620 ~ 16561741 (+)

Expression


Co-expression Network