LOC122344783 (LOC107740822,LOC107665020)


Basic Information

Item Value
gene id LOC122344783
gene name LOC107740822,LOC107665020
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20348875 ~ 20364126 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238352.1
TCCAGCAGAAACCGAGGAGAGAAAGTCGAACTCCAGAACCTAAAGAGAAAGATCGACAGCACCTTAGCAGAAAAGTTTGCAGGGTGGCAAACAAAGAAGGTGCAGTTAAGTTGGCTGTAAGAAAAAACACTGTAAGCTGTTTTTCACCCATCGCCGGCTACCAAAGATCTGATCTCCGAGCAGAGCATTCTACGTACATATCCGCCTGGAGGAAAGCCCAAGGGCTTGTGAAACTAATTTTGAACTCACCTTGCAGTGCTGTTTCAGAGGCTGAAAGAGTCAGCATTAAGGATCAGAAAGACCGGTCAAACACGAAGGCTTCTGAACAATTGGCTGTTTTGAACGCTCAGACAATCGGAAACCTTAGTTCAAACCAAATGAAAAAGCACGAGAATTCATTTAAGAAGCATCCCAGCCCCTTGAGATGTCAGGCTCGAGTGTTGTATTCTCCAGCATCTGGAAAGGCATTCAAAAGCCGTGCAGGTTCTTCATGCCCCGTCAGAGCAGTTCCAATGGCACACAGAAATCATTACTCGCACAATTCCACCTCAGAAGTATTTGCTAAAAACGACAACTTTACAAAAACGACAAAACCACTAGTTGCAGGTAAAGAAAACGAAGGCCAAATGAAATCAAACAGGCAACCTAGACATAATATCCAAGGGCTGCAGGAATATATGCATCACCAGGCCGCTGAGAGAAGGAGAAAGGTGCTGCAAATGAGGGAAGAAGCACAGCGAGAGGAcgagaggaagcaaaggaataTGCATGAAGTAATTAAGAAACAAAGGCAAGTGCTCCACAGGGCCAAGAGAGAACAGCAACAGGAGTACAAGAACAGAGGCAGTCCCGAGGAGAAGGAGAGATGTGCTCATGTAGCTGACACAACTGAAGAACAATTGTCTGTCTTTCCTAGACAGAACCAAAGTGTGACAGTAGCCGAGCGGGTGGATCTGGGTGAAGCTGGCAGTCCTGTGAGTGCAGCTGAGGAAGAGTGGGCTCAACACGCTCTGGCaactcacagacacagagaggaGGCTCTCAGGAAGACCATCAGTGCTCTAGATACAAACATGGACGATGAAGAAGCCTGGCTGCGAATCACAGACCACAAAGGGTCTCTGAGACAGTCACAACCTGCTGGACAGGGCATCTGTGGAGCCAAAAGGGAAACTTTGTCTGAACGTGCGGCTCCGAATACAGACATAGAGACAAACCACAGACATGAAAGAGTgtcgattaaaaaaaagattaaagatgaaaaagatgGAGTGGATTGCAGAGCACAGATTGACCAGACAGAAAAAGGACAGGAAGAGCAAAGTGAGAGCAGTGACTCCACAAGCAAGCGGAGTGAGCTGAGCGAGTTGTACAGCCACCTCTCCCTGGCCCAGAGCCGGCGGGTCCTGAGGGAAGACGAGCTGAGGGCACGGCAGTACAGCGCACTCTTCAGGCTCAGGGAGAAAGCGCTCCGGGAGAAGACCCAAGCTGAGCTCGACTGGTTGGAGCACTGCAGAAATCGCGGAACTGCACAAGATGATATGCTTGCTTTCACGGAGCTCAAGCAGAAGCAGGAGGAAGTAATTCACAGATTCCAACGAGAGCAGgCAGAGATCCATTCCTGGCGAAACACGTACAGATCAGGCCAGCAGCAGAGACGGTTGCTTCTCCATCATCAGAGAGACATTCTTCATATCAAACAGTCAGCTGTTGGCTTAAGACAAGCTCTGCTAATACAGACTCTGCCAAAGAAAAATGGAATCACCAAGAAGGACAACACTTCCAGTTATTTGGAAGAAGAGGGTGTTATGCAGCCTGGGATTAAGCCAGATGCTAGGAGCACAGATAAAGCACCAAGAGAAGAAGGGAGCTTGTTGGGCAAGGTAGGTTTGAGGAGGCTGTTGTCATCAGATGAAGTGTGGACTTTGGGAAGGAAGAGGAACCAAGTGGAATTTGTCCCAGCAGAGCAGGATATTCTGCAAGTCGCAGAATCAAATAATCCTCCAGCCAGTCCTCTCACAGATACAGCCGACAGAACCAGGCTTCTCTTCACCTTATCAGTCCAGAAGGAATCAGCAAAACAAGATCCTCAGAAGAAGGCACAACCGCTTTATGAGGACACCAGCAAACTCCAGAGAGAAAGACCACAACATCCAGTTGAAGTGCCAATGAAGCCGGTGTTAAATATCCAGCATTTCACACTCAAATGTGAACCTCATTCAGATTCACTCAGAGCCCCAATAGTGTCCAGTTTGTCATCTGAAAAAAAGGATGATCTCGGACTGGACTCTAAGAAGAGCCATCTTAAACCCAAGGAGCAAGAagacataaagacaaaaaacgTGGTCCATGGCAGCACAACACCAGATACCACAGCTCTAAATGTACAGAACAATCAGAGACTGACGCTGAACAACAACCACAATATCTGTGACCAATATGCCGGGGTGCAATGGAAGTCATCTCTTTCATACCCCAAAACTGATAAAACCAATGAGTTTCCTGAACAAAAATCTCAGGCGTGTACAAATGAGACCATCACAGACAATCCACTTATTGAAAACTTAATTCTGGAAGCAGTAAGTGTGGAAATCAGAAAGGCTGAGGATAGTGCATCTTGTGATGTCAAAAAGTACACCGTGGTACCAGATGATTTGGACAATAAACAGGAAGGACACTGTATACCGCCGTGTTACGAAAGACAAGCGACCGTAGAGTCTACCCTGTCAGAAATTCTCTCTCCTGTAGATGAGGTTTTATCTTACGGAAGTGCAGAACTCCCTCCATCTGTTAAAGGTGGAGTGGCATCAGGTCTTGACAGCTATGGTTGTCCTACTCCTCCTCCTGCCTTTGAGATTATTACATGGACCAGTGAGGAGGAACTTCCAGCTCCACCTGATTCTGTAGAAGATTTCTCAATTAACAGCGAGAACTTCCCTCCTCTCCCTGTGGACTTCTCTCTGAAAAGAACAGAGTCTCAGAGTCTAGACTCTAACAGTCTGAGGGAAAAAGATGTAAACGATGATACTAATGGAGCTCTGTGTGAGGATGCAGAGGAAAACGACTGTTCGGAGTACACTAGCTCACTTCCTGAAGATGCAAGAAATGAAATCTCGGATCCATTGTCCTCCTTTCAAATTGGAGACAGAGTTCTTGTGTGTAACTCCAGACCGGGTGTGCTGAAATATAAAGGGCTCACAGCGTTTGCGAATGGGTTTTGGGCTGGTGTTGCTTTAGACGCCCCTAATGGAAACCACAATGGAACTTTTAGAGGTGTGAAGTATTTCAGCTGTGACAAAAGCCACTGTGTCCTGGTGAGAGCCGAGGACATTGCTCCCATACACAGAGAACATAGTAGTGATGTAGAGACTGGAGTGGATGAAGATCCTTTTTCAGATGAGGAGCAGCCTAGGGCAAAGAGAGATAAACAACAGAAGGATGGATTGTCGACAGATGGACAAAGACATAAACTTAGTCATTGTCCTCCAAGAGATTTGACCATAACTACAATCACCACATGCACACGGCAAAAGGAACCTCAGGAAGACATGTCAGATGGAGCAAGAAAACTTtcacatgcttttaaaatgcctttaccAAGAACAGACTTTGAGCTCCATCATAATGAGCTCCTTCAAAACAGACATCATGAGGATGCTAAGCTGACAGAAGAGCTGGATAAAGATGGAGTTCACTGTGCTCAGGATAATAGAAAGAGACAAAGGATTAAAGCATTGCATGACAATCACTCTACGGATACTGAGGTCAGAAAGGGTGAGGATGGCCATTTTATGCCATGTGTCTTGGATCAGTGGCATCAGGCCCAACCCGACACGCCACCAAAGATAAAAGTGCCGCCCCATGAAGACGGCATTGTGTACAGATTAGTGGACACAGCGGTGGAGATTCTGTGTGGTCAAGCAAATGAAGACACTCTCGACCTTTATGAAACACCAAGCTATTTATTTGACGATGATAGTCGCAAGCGTTATCGGCAGGTGATCTTTCAGTTAACATCCGATGTACTTCATGAGATCTTGGGCGATCTGCTAAGGACAAAACAGTCCGCCCAGAAGACAGATGATCGATCTGTGATCTCAGCTCTGCAATGCAGTCAAATTTCcatcacatttttaaagGCTGCCGTGAGAAAAGAGATACAGAAAATTCTGAATTTAGAGCGAGGCGAGCAACGGATGACAGAGATGCTCCAAAAACTGTGCAAATACTGGTACGCCAAGAGAGACAGAGTGGACTTTATACTGATTCAGGAACTTCATAACGAGGAGAGAAGTTGGCTAGACTACAGTGCTGACCAGTACACTGTGAAAATGCATCTGACTGAGgagattttcagttttcttttggATGACACAATATTAGCCCTAAATCATATGCACATTTCAACCTAAAAGTCAagtttcctttttgggtgaatctTGGGACAGATCCTGTCATGAGTATGTCAGAGTCACATTTCACTAATTATATTTTGCTTGAAGAACATAAACCCATAAAACCCATTTTTGGACCATTTAGTGCAGTTTTCTTGCATTATGAAATGTTCATAGCAACTAAACACATTTCCAATCTTTACCACTTTTGCaattacagtaatgaaaaaaaaattcattatggAAATTCTCAACATTTTagatattgtttacatttttgagtaTTTATATGTCataatattgtttgtattttaatatctgcTCACTTTAAATAGTGCATCACACTCATTTGTTTACTGTAATGGATttaaagtaacactttattaaagtaataagaATATGATGGAGAACAATgggaactgcaaaaaaaattatggatatattacataaatgagAATTTCAGGGCAAAATGTGCTTAATGGTTGTtaacaaacatc

Function

NR:

description
PREDICTED: centrosome-associated protein 350-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238352.1 True 4891 mRNA 0.44 19 20348875 20364126

Neighbor

gene id symbol gene type direction distance location
LOC122344781 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664,LOC107740821 coding downstream 297 20326570 ~ 20348578 (-)
LOC122345827 LOC107552640,LOC107665013,LOC107587663,LOC107731062,LOC107740808,LOC559520,LOC107672520 coding downstream 24310 20320918 ~ 20324565 (-)
LOC122344776 LOC107731020,LOC107672533,LOC107552623,LOC107665026,LOC107587726,LOC107740807 coding downstream 41043 20304882 ~ 20307832 (-)
LOC122345852 edf1,LOC107587662,LOC107740806,LOC107665036,LOC107552639,LOC107731034,LOC108423590 coding downstream 46259 20300494 ~ 20302616 (-)
LOC122345847 NA coding downstream 48527 20299146 ~ 20300348 (-)
LOC122345837 zgc:101858,LOC107740831,LOC107699707,LOC107552635,LOC103359842 coding upstream 27560 20391686 ~ 20394553 (-)
LOC122345828 olfm1a,LOC107699781,LOC107552636,LOC107587661,LOC107672574,LOC108423683 coding upstream 186844 20550970 ~ 20564321 (-)
LOC122345848 NA coding upstream 313867 20677993 ~ 20679085 (-)
edf1 edf1,LOC107587662,LOC107740806,LOC107665036,LOC107552639,LOC107731034,LOC108423590 coding upstream 315414 20679540 ~ 20681669 (-)
LOC122345836 LOC107731020,LOC107672533,LOC107552623,LOC107665026,LOC107587726,LOC107740807 coding upstream 319677 20683803 ~ 20686924 (-)
G38158 NA non-coding downstream 62646 20284623 ~ 20286229 (-)
G38156 NA non-coding downstream 69774 20276668 ~ 20279101 (-)
G38147 NA non-coding downstream 188081 20155781 ~ 20160794 (-)
G38019 NA non-coding downstream 392213 19956428 ~ 19956662 (-)
G37928 NA non-coding downstream 645190 19703420 ~ 19703685 (-)
LOC122345854 NA non-coding upstream 294968 20659094 ~ 20659471 (-)
G38171 wdr5,LOC107741954 non-coding upstream 295781 20659907 ~ 20660855 (-)
G38172 NA non-coding upstream 298023 20662149 ~ 20662872 (-)
G38173 brd3b,LOC107740804,LOC107665032,LOC107731037 non-coding upstream 303398 20667524 ~ 20668474 (-)
LOC122345856 NA non-coding upstream 363268 20727394 ~ 20728862 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other downstream 221485 20125589 ~ 20127390 (-)
G38058 NA other downstream 293077 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 413299 19865019 ~ 19935576 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 1164897 19175463 ~ 19183978 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 2998495 17346469 ~ 17350380 (-)
LOC122345844 ppil3 other upstream 30605 20394731 ~ 20396734 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 541917 20906043 ~ 20936097 (-)
G38359 NA other upstream 1000112 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 1248562 21612688 ~ 21619583 (-)
akap10 akap10,LOC107595480,LOC107587677 other upstream 1444887 21809013 ~ 21826105 (-)

Expression


Co-expression Network