ncaph (ncaph,LOC107709847,LOC107673441,LOC107594987)



Basic Information


Item Value
gene id ncaph
gene name ncaph,LOC107709847,LOC107673441,LOC107594987
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9227044 ~ 9232829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043238353.1
GTCGGTACGTGTGACATCATTGATGACGCGTGTAACCGTTCGGCGCTAATTTTCAAATGGTTGCCTGAACAGACGGCAAGAGAAAGTTTGGATcggttttattgtttaaaatcgTCCGATAATTACAGTTTCGTTATGAGCGCATTCAGTACCCCGACATCCCGGCCACGACAGTGGTCCTCGCCGGCAATAGGACACAAAGCCGCGCTGTCGGCCACTAGCACACCTCTGCTGGACAACATCAAGGGAAACGATGATGAACAGGAGAGACGTCAAAGACGCAGATCCAGGGTCATCGACCTTCACGGAGTGACTGACTCCTCCATCAACGAGGCCGGTAGCCACAGTACCGCAGGCACACCAGCTGCTGTCCCTAAGCTGTCATCCGCACAGATATCGGAGCATTACTCTACCTGTATCAAGCTTTCCACCGAAAATaaaATTACCACAAAGAATGCATTTGGCCTGCACCTCATTGATTACATGGCAGACATTCTCAAGCAGAAAGACTCCGAGCTCAACTTCAAGGTGGCAGCGGGGACCCTGGATGCCAGCACAAAAATATATGCGGTGAGGGTGGATGCGGTTCACGCTGATGCTTACAGAGTCTTGGGAGGCTTGGGATCTGAGACAAAACCAAAAGAGAGTCAGGATGGTGAGGAGGTGGATGAGGTAGCCGAGGGCGGTAAGGGGGAGCAGGTGGCTGCTAAACAGACTAAGAAAAGACCTCAGAAGAAGACAGTGGAGCAGAACCTCAGTAACATCAATCTCTCTGAATCCGAGATGAAGTGTGAGGTTGACCCCATGTTCCAGCGTATGGCCGCTTCCTTTGACGAGAACAGTACAGCGGGAGTGTTCCTCTCTGTGCTGTTCAGTGAAGACAGTCTCTGTGAGCTGCGTTTCCCTTCCCATATGACCTTGCTGAAGTCACAGTCATCTCCTGTGCAGGTGCCCCATCAGCATGTCCCGGTCTCGCCGTTTATAGgtCATTTAAAGACAGTAGAAGACAGACCAATTTGTCCATCTTTGGAAGATTTCTCCTTTACTAGATGGACTCCTGAACAAACCACAAACCTCAACCAGCTTCTTGAAAGGATGAAGCAGGGAGAGCACGCTTTTGATGTCAATGCGGACATTGAACCAGATGAGGATGTGGGTCAAGATTTTGGGGATAATTTTGATGCAGATGTAGATGTGGACGAGGGCGGACATGGAGACTGTGAGGAGTTTAAGGAACACCAAGAAGCTTGTTCAAAGAGCCCTCAGAAAGGACGAGGTGTTATTCCTATCGGTGACGTGGATATTGCCACCATGTGTCTGCAGTTGTCTGATCAGCCCAGAGAGTACTCGTACTTCAGTCCCAGGACCATGGCCACCTGGGTCGGACCTGGCTACTGGCTCTTCAAACCTGGACATAAACAGGATCACAAACCAGACAAAGAACCTCGGAAACGAGCACCAAAGAATCCTCTCGTAATTGACTTTAAGGGAGATATCAactttcataattattttcGGACAACTAAAGCAGCAACCACTATTAGCAAATCTGCTTTGAACACCAGCAACAAGAAAACCACACTTCCAGCAGATTTCCAGTATCCACCCAGTAACCTGTCACAGCTTAGTCTCAAGCCTTCCAACACACTCATTGCCGAAGGAAAGAAGAGATTATCGGGTGAGCTGGGTGAGGAAATAGGAGAGTATGACTACAACAACGCTAATGACACAGCCAACTTCTGTCCTGGTCTTCAGGAAGGGGACAGTGAGGATGCTGAAGGCTTTGGAGGATCTGATGACTCCCAAACAGACCGACCAACCCCTTTCTCTCTGGACACAGATGACATTTCTACATACGGAGAGGACTGTCTCGTCCCTGAGCCTCACAAAGTCAACATTATTGAGATAAACTATGCCAAGACAGCCAAAAAGATGGACATGAAGAAGCTAAAGACCACTATGTGGGGTCTTCTAACAGAGAGTCCTGAAAAACAAGCAAAGCAGGTGAACAGTGAGGAAACAGAAGTACCTGGAGAAAAATCATTCAGCCAGTCTGTCAGGAATCTTGTACAAAGGCTTCCCTCAGCCATGGCTACCAATCTCTCAGTACCATTGGCTTTTGTGGCCCTTCTGCACTTGGCTAATGAGAAAAACCTGGAGCTGCACAAGATTGACGGCATGACCGATATCATCATTAAACAAGGCCACTGAAAACCAAAACAGATCTTTATATAAGTCTTTAGTTGTagcaaaatgtaaatgcagcTTCTTATGTACTTTCTCATGTAAAATACCTATGTGCAGCTAAAACAGTATAGTCAAACGGAGGAACGTCAGgatcatgttaaaaatgttgtaCAGGAAACTACCACAGAAAAGTGAAACggctcaaaataaaaaaaaaaaaaacatgggttGCGGtccatgaataaaataattgctttttaagATTGAACTGttttgataactttttttttttcttcacagtaATAGCAAATGTGAAGTTACTGTTGTCAgtgtctgttttttaaaaaatgtttatttaaattgtaaaacttcattttatggcttggtttcttttctgtgtatgttttacatctacttttgaaaaataaa
>XM_043238354.1
GTCGGTACGTGTGACATCATTGATGACGCGTGTAACCGTTCGGCGCTAATTTTCAAATGGTTGCCTGAACAGACGGCAAGAGAAAGTTTGGATcggttttattgtttaaaatcgTCCGATAATTACAGTTTCGTTATGAGCGCATTCAGTACCCCGACATCCCGGCCACGACAGTGGTCCTCGCCGGCAATAGGACACAAAGCCGCGCTGTCGGCCACTAGCACACCTCTGCTGGACAACATCAAGGGAAACGATGATGAACAGGAGAGACGTCAAAGACGCAGATCCAGGGTCATCGACCTTCACGGAGTGACTGACTCCTCCATCAACGAGGCCGGTAGCCACAGTACCGCAGGCACACCAGCTGCTGTCCCTAAGCTGTCATCCGCACAGATATCGGAGCATTACTCTACCTGTATCAAGCTTTCCACCGAAAATaaaATTACCACAAAGAATGCATTTGGCCTGCACCTCATTGATTACATGGCAGACATTCTCAAGCAGAAAGACTCCGAGCTCAACTTCAAGGTGGCAGCGGGGACCCTGGATGCCAGCACAAAAATATATGCGGTGAGGGTGGATGCGGTTCACGCTGATGCTTACAGAGTCTTGGGAGGCTTGGGATCTGAGACAAAACCAAAAGAGAGTCAGGATGGTGAGGAGGTGGATGAGGTAGCCGAGGGCGGTAAGGGGGAGCAGGTGGCTGCTAAACAGACTAAGAAAAGACCTCAGAAGAAGACAGTGGAGCAGAACCTCAGTAACATCAATCTCTCTGAATCCGAGATGAAGTGTGAGGTTGACCCCATGTTCCAGCGTATGGCCGCTTCCTTTGACGAGAACAGTACAGCGGGAGTGTTCCTCTCTGTGCTGTTCAGTGAAGACAGTCTCTGTGAGCTGCGTTTCCCTTCCCATATGACCTTGCTGAAGTCACAGTCATCTCCTGTGCAGGTGCCCCATCAGCATGTCCCGGTCTCGCCGTTTATAGgtCATTTAAAGACAGTAGAAGACAGACCAATTTGTCCATCTTTGGAAGATTTCTCCTTTACTAGATGGACTCCTGAACAAACCACAAACCTCAACCAGCTTCTTGAAAGGATGAAGCAGGGAGAGCACGCTTTTGATGTCAATGCGGACATTGAACCAGATGAGGATGTGGGTCAAGATTTTGGGGATAATTTTGATGCAGATGTAGATGTGGACGAGGGCGGACATGGAGACTGTGAGGAGTTTAAGGAACACCAAGAAGCTTGTTCAAAGAGCCCTCAGAAAGGACGAGGTGTTATTCCTATCGGTGACGTGGATATTGCCACCATGTGTCTGCAGTTGTCTGATCAGCCCAGAGAGTACTCGTACTTCAGTCCCAGGACCATGGCCACCTGGGTCGGACCTGGCTACTGGCTCTTCAAACCTGGACATAAACAGGATCACAAACCAGACAAAGAACCTCGGAAACGAGCACCAAAGAATCCTCTCGTAATTGACTTTAAGGGAGATATCAactttcataattattttcGGACAACTAAAGCAGCAACCACTATTAGCAAATCTGCTTTGAACACCAGCAACAAGAAAACCACACTTCCAGCAGATTTCCAGTATCCACCCAGTAACCTGTCACAGCTTAGTCTCAAGCCTTCCAACACACTCATTGCCGAAGGAAAGAAGAGATTATCGGGTGAGCTGGGTGAGGAAATAGGAGAGTATGACTACAACAACGCTAATGACACAGCCAACTTCTGTCCTGGTCTTCAGGAAGGGGACAGTGAGGATGCTGAAGGCTTTGGAGGATCTGATGACTCCCAAACAGACCGACCAACCCCTTTCTCTCTGGACACAGATGACATTTCTACATACGGAGAGGACTGTCTCGTCCCTGAGCCTCACAAAGTCAACATTATTGAGATAAACTATGCCAAGACAGCCAAAAAGATGGACATGAAGAAGCTAAAGACCACTATGTGGGGTCTTCTAACAGAGAGTCCTGAAAAACAAGCAAAGGTGAACAGTGAGGAAACAGAAGTACCTGGAGAAAAATCATTCAGCCAGTCTGTCAGGAATCTTGTACAAAGGCTTCCCTCAGCCATGGCTACCAATCTCTCAGTACCATTGGCTTTTGTGGCCCTTCTGCACTTGGCTAATGAGAAAAACCTGGAGCTGCACAAGATTGACGGCATGACCGATATCATCATTAAACAAGGCCACTGAAAACCAAAACAGATCTTTATATAAGTCTTTAGTTGTagcaaaatgtaaatgcagcTTCTTATGTACTTTCTCATGTAAAATACCTATGTGCAGCTAAAACAGTATAGTCAAACGGAGGAACGTCAGgatcatgttaaaaatgttgtaCAGGAAACTACCACAGAAAAGTGAAACggctcaaaataaaaaaaaaaaaaacatgggttGCGGtccatgaataaaataattgctttttaagATTGAACTGttttgataactttttttttttcttcacagtaATAGCAAATGTGAAGTTACTGTTGTCAgtgtctgttttttaaaaaatgtttatttaaattgtaaaacttcattttatggcttggtttcttttctgtgtatgttttacatctacttttgaaaaataaa

Function


symbol description
ncaph Predicted to enable chromatin binding activity. Acts upstream of or within mitotic sister chromatid segregation. Predicted to be located in chromosome and cytoplasm. Predicted to be part of condensin complex. Is expressed in brain; ciliary marginal zone; optic cup; and spinal cord. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NCAPH (non-SMC condensin I complex subunit H).

NR:

description
condensin complex subunit 2-like isoform X2

GO:

id name namespace
GO:0007076 mitotic chromosome condensation biological_process
GO:0000796 condensin complex cellular_component

KEGG:

id description
K06676 BRRN1, BRN1, CAPH; condensin complex subunit 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043238353.1 True 2616 mRNA 0.45 18 9227044 9232829
XM_043238354.1 False 2613 mRNA 0.45 18 9227044 9232829

Neighbor


gene id symbol gene type direction distance location
vamp8 vamp8,LOC107594988,LOC107656490,LOC107587315,LOC107728749,LOC107709825 coding downstream 446 9222554 ~ 9226598 (-)
dnah10 dnah10,si:dkeyp-86b9.1 coding downstream 12038 9185548 ~ 9215006 (-)
LOC122345763 LOC107560213,LOC107560217,LOC107709824,LOC107709823,LOC107560218,LOC107681212,LOC107715747,LOC107715746 coding downstream 58985 9165895 ~ 9168059 (-)
nsmfb LOC107709845,LOC107560226,LOC107587468,LOC107715753,LOC107681255 coding downstream 61326 9137421 ~ 9165718 (-)
LOC122345922 LOC107560213,LOC107709824,LOC107560217,LOC107709823,LOC107560218,LOC107681212,LOC107715747,LOC107715746 coding downstream 203358 9022552 ~ 9023686 (-)
tacr1a tacr1a,tacr1,LOC107673353,LOC107594990,LOC107709848,LOC107656492,LOC107721554,LOC107587419 coding upstream 15492 9248321 ~ 9275552 (-)
ogfod2 ogfod2,LOC107673403 coding upstream 83825 9316654 ~ 9319605 (-)
adam28 LOC107673423,LOC107709852,LOC107594994,LOC107656497,LOC107721555 coding upstream 139185 9372014 ~ 9381877 (-)
zmat4a zmat4a,zmat4,LOC107594996,LOC107587306 coding upstream 198096 9430925 ~ 9494650 (-)
sfrp1a LOC107587465,LOC107721541,LOC107659285,LOC107709857,LOC107673425,LOC107594997 coding upstream 275808 9508637 ~ 9518513 (-)
G34594 NA non-coding downstream 166230 9013306 ~ 9060814 (-)
G34607 NA non-coding downstream 235731 8991101 ~ 8991313 (-)
G34606 NA non-coding downstream 236021 8988611 ~ 8991023 (-)
G34583 NA non-coding downstream 292905 8933911 ~ 8934139 (-)
G34582 NA non-coding downstream 293964 8932860 ~ 8933080 (-)
G34704 NA non-coding upstream 14091 9246920 ~ 9248041 (-)
G34869 NA non-coding upstream 531244 9764073 ~ 9764532 (-)
G34871 NA non-coding upstream 533439 9766268 ~ 9766607 (-)
G34877 NA non-coding upstream 544804 9777633 ~ 9778238 (-)
G35035 NA non-coding upstream 1048580 10281409 ~ 10296141 (-)
vamp5 LOC107594989,LOC107681225 other downstream 6516 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 296991 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 549326 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 795458 8429700 ~ 8431586 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other downstream 812238 8411882 ~ 8414806 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other upstream 104999 9337828 ~ 9402623 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 1092130 10324959 ~ 10335343 (-)
G35122 NA other upstream 1228379 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 1635535 10868364 ~ 10874064 (-)
G35384 NA other upstream 1691098 10923927 ~ 10926163 (-)

Expression



Co-expression Network