LOC122344788 (LOC107548517,LOC107662059)


Basic Information

Item Value
gene id LOC122344788
gene name LOC107548517,LOC107662059
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27168265 ~ 27172894 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238359.1
TCGAAAGGACTTTGGAAGCAAACTCTGCCCGGAGCAGCACCATGCTTTCGATGTCATTACTGAATGCCTTGGACGTCGAGAGCTGTTTAGGACTTCTTCTCGTATCCTTACTAATTTTCGATTTTTGGAAAAGTAAGAATGCGCCGAACTTTCCGCCAGGACCGTGGAGTTTTCCGTTTCTTGGCAACGTTTTCGCCGGTTTCGACTGTCGCGCGATGGACGAGGTGGCTGCAAAGTTTGGCAACATTTGCAGCCTAAGAGTGGGTTATGACAAGATAGTGCTGGTGTCTGGATACGAGAGGGTGAAGGAGGTTTTGGAGACACAAGGGGACTACTTTCTGGACCGGGTCAGATCTCTTCCTTTTAAACAAGTAGTTCAAGGAAATGGCATTTCCCTGAGCAGTGGATACAAGTGGAGGAAGCAGCGCCATTTTACTTCCTTTCACCTGAAGGCCTTTGCAGAGGGCAAAAATGCTTTGGAGCGTCACGTTCAACAAGAATGCATCTATCTGTGTCAGAGCATTGAAGAAGAGCAAGGAAGCCCCTTCAACCCTCATGACATCCTAAACAATGCCACTGTTAATGTAATTGGATGCTTTGCGTTTGGGAAACTTTCTGATGACGGCTTCGTTGACTTCAGGAACCTGCTTGTCAATTCAGACTCCATGTTCATAGAAAATATTCCACAAATTCAGttttacaatGCATTTCCTGGGATTGTCAAACGTTTCTATGGACCACATAAGACGGCTTTATTAAACTATGCAAAGCTATCAGCCTTCATTAAGAAACAAATTGAGAAACATAAGAAGGACTGGGACCCTTTCGATCATCGTGATTTCATAGATGCCTACATTGGAGAGATAGATaagAGACGGAAGGATACAGAGGCTGCTTTCACTGGGGAGAACCTTGCCTGTATCACTGTGGACCTTCTCAAGACTGGGACACAAACCATGACTGATACCTTACGATGGGCTTTACTTCTAATGACCAAGTACCCTGATGTCCAAAAGAAAGTTCAAGATGAAATCGACTGTGTAATCGGCAAGTGGCGGCAGCCATGTTTGGTAGACAGAGTCAAAATGCCTTACACAGATGCAGTTCTTCATGAAACTCAGAGAGTGAGCAACATCTTCCCTCTGACTGCACCGCGTCTGACGAGTCGAGACTCAGTACTGGCTGGATACTTCATTCCTCAAGGCACACTGGTCATCTGTCATCTGTCCTCTGTGCTGAAGGATCCATCACAATGGGAAAAACCAGATCAGTTTTATCCCGAACACTTTCTAGATGACCGAAGGAATTTTAGGAAACGggatgcattttatgcattttctgCAGGGAAAAGGTCATGTTTGGGTGAGCAGCTCGCACGAAATACACTCTTCCTGTTCTTCACTTCCCTCCTCCAGAGGTTCTCGTTCTCAGCTCCTGAAGGATTAGGACCTCACTGTAAGGACCAGGAACAGATCAAGATGTCTCAAGAATCCTCCCAGATCTTTGTGTCATTACGTCAAGAGAAACGGGAATCAGATCTGAACTGATACTGAGTTCTATTAATAGATAGATGTTATGTTAATACATGAAGTAAAATGCAGTCTTTTTGATTCTGTTCAATAAGAAAAGATTTATTCCACAGCGATAAAGCATATGCAAGGACATGTgcattatgaatgtaatttttgtaaaaatgtttagattgtaaaatgttaatacaattcaaatgtgaaaattatgctGTATATTGTAGCATGTAATTGATATAAAATCTACTTATTCCCATAAATcattcaa

Function

NR:

description
PREDICTED: cytochrome P450 2J2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238359.1 True 1797 mRNA 0.43 9 27168265 27172894

Neighbor

gene id symbol gene type direction distance location
LOC122345424 klhl34,LOC107586735,LOC107671349,LOC107705277,LOC107721877,LOC107663667,LOC107590345 coding downstream 68546 27095380 ~ 27099719 (-)
LOC122345427 LOC107721568,LOC107697698,LOC107711701,LOC107654838,LOC108438743 coding downstream 153767 27001647 ~ 27014498 (-)
LOC122345425 rps6ka4,LOC107758164,LOC107698546,LOC107567284,LOC107702937,LOC108427766 coding downstream 167005 26997549 ~ 27001260 (-)
unga ung,unga,LOC107712535,LOC107687060,LOC107560323,LOC107752258,LOC107702903 coding downstream 266591 26897463 ~ 26901674 (-)
LOC122345160 mlxip,LOC107687059,LOC107712534,LOC107560310,LOC107702943 coding downstream 271043 26884570 ~ 26897222 (-)
spaw LOC107548501,LOC107662086,LOC107740019 coding upstream 104153 27277047 ~ 27280391 (-)
usp39 usp39,LOC107662055,LOC107739996,LOC107702962,LOC107722749 coding upstream 115278 27288172 ~ 27293486 (-)
mat2ab mat2ab,LOC107548521,LOC107662054,LOC107739995,LOC107556049,LOC107722750,LOC107702964,LOC106580346 coding upstream 129365 27302259 ~ 27308208 (-)
inpp5jb LOC107739994,LOC107548522,LOC107702965,LOC107662051,LOC107556011,LOC106585266 coding upstream 139995 27312889 ~ 27334798 (-)
smtnb smtn,LOC107739992,LOC107662053,LOC107702966 coding upstream 170596 27343490 ~ 27389998 (-)
LOC122344810 LOC107662059,LOC107548517 non-coding downstream 21303 27115967 ~ 27146962 (-)
LOC122344808 LOC107671984 non-coding downstream 25607 27140415 ~ 27142658 (-)
LOC122344809 LOC107671984 non-coding downstream 39809 27127129 ~ 27128456 (-)
G39738 LOC107705276,LOC107586737,LOC107671348,LOC107663665,LOC107721875 non-coding downstream 83479 27082001 ~ 27084786 (-)
G39712 NA non-coding downstream 285090 26876590 ~ 26883175 (-)
G39857 NA non-coding upstream 15956 27188850 ~ 27189222 (-)
G39870 NA non-coding upstream 51993 27224887 ~ 27225562 (-)
G39872 NA non-coding upstream 59764 27232658 ~ 27234162 (-)
G39888 NA non-coding upstream 92395 27265289 ~ 27267229 (-)
G39893 NA non-coding upstream 112288 27285182 ~ 27286194 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 60880 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 1599579 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 1885979 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2409597 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 2419655 24746672 ~ 24748610 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 210027 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 713147 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 1082934 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 2151088 29323982 ~ 29326115 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 2287691 29460585 ~ 29490204 (-)

Expression


Co-expression Network