cdca5 (cdca5,LOC107567277,LOC107698540)


Basic Information

Item Value
gene id cdca5
gene name cdca5,LOC107567277,LOC107698540
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26816920 ~ 26820637 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238366.1
GTCGGTTTAGCTCCACCCCTGCATCCGCCATTTCCTGCTACTGCATGGGAAGGCGGGCGAATTTGAAAGAAGAGCGTATACGTTTCCGTCTGAATgacataattatttgtattacttGGTTTATACAAATCAACACAAGCGAATATATAACGGATTGGACAGTGTAAGTAAAACGAAGACCCAGCTCTTTTAGCATACATGCTCCGTTAGTTTGTCGTGTGTTCGTCGTGTTAGCTTCATCTCCCGTCCAGCGGCTGTTCACAGATTCTGGATCTATTCCCTTCAAGATGAGCAACAAAAGCACACGGTCACTGTCGAGGAGAAGCAGCGATGAAGTCAGAAAGTCAAGTGGAAAGAGTCCACCGCGAAGGAGGTCCTGCAGGCTGTCTGCAAATGACCAAAGCCTGGCCTCGAGAGTTCTGGCTCCACCTGTGGTTGTGAAGCGGTCAATCACTGTTAGGAAAATTGCACCCAGGAAAACTCAGGCCCTGTCTGACAGTAACAAGGAGAATGTAGAAAGATTATCTGAAGTGCCGAAAAAGCTGTCTCGAGTCTTGACATCGTCTCCAGCTGTAGTGACAATACCCAAGACGTCTGTGCTCTCGCCCATCCTGCCTCCTTCATCTCCATCCGCTGAGCCCAAAGAATCGGAGCAGGACCCCGTTTGGTCCCAAAAAGTACGACGCTCTTACAGTCGCTTGAGTATAGGGGACAAGTCCTTTGAAAGCCCCAAATCCCATCCTGCGCCTTCCACTTCTCCCAACAACCGAGAGACCCTGTTTGGTTTTGAGAGGCTTCAGACTCCAGAGGTGATGCGTAAAGCTGAGGGATCTAGAGCAGCTCCTCTGGGCTCTATGTCCGTCTCGCTGGGTTCTTTCAACGTTTCCGCTGCTGATGAAAGCGCGTCAAACCCCCTGGAAATTGATCTAAACATCCCAGGTGTGTGTCTGGGGAAGAAGACGAGCAGGCGGAAGCGCGTGCAACAGATAAAGATGTCAGAGTTGGACGTTCTTGCTGCAAAGATGAATGCTGAGTTTGAGGAAGCTGAAAGTTTTGACCTGGTTGTTGAATgatccccacacacacacacacacacacacacacacacacacacacgcaggacACTTTCAGGACGTGGGATACTTTCCAACTCATCACTTTTGtaattgttcatttcttttctctgtttcctCCTGCAAAATCTTAACTAAAAGCATGCTTTAAGAGATCAGTTTTGTTGTTCTGATCATTTTTCACAGTGCCACAATCATCAGTAAATCCCTGAATGACAAGGTTTTTATTCCTTGTTTATATTTTCGTATTTGTTGAATGGGTTTTGTTAActcttgttattttaataaatagcatTTGCGGTAGTGGCCTGTCAGAGTTGAAAGTGAATCCTGttgttaaaagtatttttttctaggATTAAATGGCGGCAGACAGGAAGATCACTGTTACAATATGTAATTCTCCacctttttatattcataaattcTGTCTGCCTAGGTCTTTTTAGCTTAGTTGAGCTTTAGTTCTTTTAAGTGGGAAGTGAGCTCAGTATGTAGAGCAAGCGTCGCTGCATGACGTGATTATACTGTGCTTCACCACTAGAGTGAGCACTTGATTATCACAGTACTCCTAAGTGCATCTATTGTTTACTCTGTTCCAACATGGTTCCTGAACGTTTTTTGTGGTATGCGGTGTGTTCAGCATGTCAATgtcaatccatccatcaataATCTAACAGAACCTGAGTGCAGTGCATGCCGAGGCGTCTGAGAggcctgctgcagctgatctgAGCTTTGCTGCTCTccatatttctaaaataaataaatgcattttgcctTATTTAA

Function

symbol description
cdca5 Predicted to be involved in double-strand break repair; mitotic sister chromatid segregation; and regulation of cell cycle process. Predicted to act upstream of or within cell division. Predicted to be located in chromosome. Predicted to be active in nucleus. Orthologous to human CDCA5 (cell division cycle associated 5).

NR:

description
PREDICTED: sororin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238366.1 True 1862 mRNA 0.45 5 26816920 26820637

Neighbor

gene id symbol gene type direction distance location
si:dkey-273o13.3 LOC107758159,LOC107567285,LOC107698543,LOC107755655 coding downstream 6983 26802384 ~ 26809937 (-)
rom1a LOC107758165,LOC107567283,LOC107698544,LOC107755654 coding downstream 16874 26796255 ~ 26800046 (-)
rps6ka4 rps6ka4,LOC107758164,LOC107698546,LOC107567284,LOC107702937,LOC108427766,LOC103040978 coding downstream 27902 26769931 ~ 26789018 (-)
flrt1a LOC107695997,LOC107741023,LOC107702935,LOC107564076,LOC107755656,LOC107571526 coding downstream 97174 26673097 ~ 26719746 (-)
stip1 stip1,LOC107564074,LOC107674894,LOC107571522,LOC107755657,LOC107702934 coding downstream 169385 26639154 ~ 26647535 (-)
clip1a clip1,clip1a,LOC107567280 coding upstream 661 26821298 ~ 26851848 (-)
zcchc8 zcchc8,LOC107674788,LOC107740086,LOC107752243,LOC107560308 coding upstream 33399 26854036 ~ 26859879 (-)
rsrc2 LOC107740083,LOC107674791,LOC107752237,LOC107702941,LOC107571524 coding upstream 42768 26863405 ~ 26869594 (-)
LOC122345160 mlxip,LOC107687059,LOC107712534,LOC107560310,LOC107702943 coding upstream 63933 26884570 ~ 26897222 (-)
unga ung,unga,LOC107712535,LOC107687060,LOC107560323,LOC107752258,LOC107702903 coding upstream 76826 26897463 ~ 26901674 (-)
LOC122344941 NA non-coding downstream 443098 26372619 ~ 26373822 (-)
G39585 NA non-coding downstream 663217 26153465 ~ 26153703 (-)
G39579 NA non-coding downstream 697837 26118474 ~ 26119083 (-)
G39574 NA non-coding downstream 1033329 25782979 ~ 25783591 (-)
G39572 NA non-coding downstream 1088450 25728237 ~ 25728470 (-)
G39712 NA non-coding upstream 55953 26876590 ~ 26883175 (-)
G39738 LOC107705276,LOC107586737,LOC107671348,LOC107663665,LOC107721875 non-coding upstream 261364 27082001 ~ 27084786 (-)
LOC122344810 LOC107662059,LOC107548517 non-coding upstream 295330 27115967 ~ 27146962 (-)
LOC122344809 LOC107671984 non-coding upstream 306492 27127129 ~ 27128456 (-)
LOC122344808 LOC107671984 non-coding upstream 319778 27140415 ~ 27142658 (-)
LOC122344921 NA other downstream 1248234 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 1534634 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2058252 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 2068310 24746672 ~ 24748610 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other downstream 2222804 24587724 ~ 24594116 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other upstream 279178 27099815 ~ 27107385 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 562284 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 1065404 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 1435191 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 2503345 29323982 ~ 29326115 (-)

Expression


Co-expression Network