castor2 (gatsl2,LOC107685562,LOC107587690,LOC107595468,LOC107681899)


Basic Information

Item Value
gene id castor2
gene name gatsl2,LOC107685562,LOC107587690,LOC107595468,LOC107681899
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22020667 ~ 22036314 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238390.1
CCATTCCAATCCTTGTCGGAGTGGAAACACGGGGGCCGACAGTCCTCTTTTTTCTCCCTTCCCGTTTACCTCGttgtgctttcttttatttcaccCCGCtttactctctttctctcttttcctcggCAGACaacttttccttttctctcccCTCCTTTCCGCTCCGTTTGAAGGTTTTAAAGCCCTGTCCATAAGctctagttatttatttatttattctttcttgTTTTATCAAAACAGAATAGgcagttatatatacatatatatatattttagatgtacCACAAATGAGAAGACGCAAAAGATGGAGCTGCACATTTTAGAGCACAGTTTAAAAGTAGCAAGTATAGCGAAAGAGGGCATCCAGATTTGCACTCACGGATTAATCAAACTAGCTTTTCTGCCCTCCAAAACAAGATGTAAGTTCTTTAGTTTAACCGAAACTCCGGAGGATTACACCATTATCGTGGATGAAGATGGCTTTAAAGAGCTGCCGGAGTCTGAGTATCTCAGTGTGGCCGATGCAACGTGGTTGGCTCTTAATGTGGTGTCCGGGGGCGGGAGCGCTACCAGCTCTCAACCAATCGGAGTAACAAAAATCGCTAAATCAGTCATCGCCCCATTGGCAGACCATAATATCTCCGTGTTCATGCTGTCAACATACCAGACTGATTTTATATTGGTTCGAGAGCGGGATCTACCCATGGTCATGCACACACTGTCTTCAGAGTTCACTCTCCTGAGGGTTGTCAATGGAGAAACAGTTGCTGCCAACAGTACCGGGGTCACCAATGGTTTCGTCAAGCCTAAACTGGTCCCCCGGCCGATCATTCACCCTCTCTCCAGCCCCAGTAATATGTTCTGCGTTACCAGCCTGGACCCCGACACGCTGCCCTCGGTGGCCACGCTGCTCATGGACGTCATGTTCTACTCTGGCGGAACGAAAGAGACCGGGGGGCAGAGCGAGGATTCTGGACACATCCGCTTTTTCTCCTTCTCGCTGATCGAGGGCTACATCTCTCTAGTTATGGATGAGCAAACCACCCGGAGGTTTCCAAACAACGTCCTCTTCACCAGCGCTTCAGGAGAGCTTTGGAAAATGGTCCGCATCGGAGGACAACCCTTAGGGTTCGATGAATGTGGCATTGTGGCTCAGATATCTGAACCGCTGGCGACCGCCGACATTCCAGCCTACTATATCAGTACCTTCAAGTTTGATCACGCTCTGGTGCCTGAAGAGAACATCCAGAGTGTGATCGGAGCCTTGAGGACCAATGAGAGCACAGGACAGTGAGACTCTGCGATTGGCTAGTCGTCCCACGTCCctgaaaacatttagattttcttaTGTCAAACTCTTAAAAGTGCCAAGAGCTTACCTGAGGACTGCTTCTGGGAGGAGGATCGGACGGAAGGGGGCTGGATAATTGAGGGGGGGGGGGGCTCTAATCTTGCAGTCAGTATTAAGCAACAGCATCACTTCTTGTCCATTTGTGCGAAAAAGAAAACCCTAATCCCAGCCCGACTCTACAGGGACCCTGCAATGGTGTGAATCCAGTGTTTTTCTTGTCTTCTTTCTCCCCCACCCCTCTTCCTCTTATCCACTCCTCCTCCGCACATCATTTTACCATGGCAACAGGGCCTGGACTTTAGCTACCGATTCTTAAGACGTTGCAAATAACCATTATGTATTAGTGGCAGGTCCTCCTCCTTGAGGACACAGAATGTACTCCAATGTTTCTCGagatttatttcctttttcctGCCCCCCTTCTTGTTTTCCCTTGCAGTGCCAAGACGTGGGGCATAAACAAACTCCTTGTCTAAAAACGTGATGTTTTTGGGATGCAATTTGATGGTTCAgggttgttgttgctgttgttgttgtttttttggttttttttcagcaaaatggTCCAGTCACAAGTTCAGTCTGTGAAAGAAGCTTTTCACGCTTGTTCGGAaagtttcttgtttttgtttagagGTTTTGTTTCTTTCCCCTCACCTCAATCCTATATCCACATTTCAATGCCAAGTAGCTGGGTAATgaattagttgttgttgttgttgttgttgttgttttttgccttCAGAGTACAATCAATGGTTTTTCTGTCCGCTCGGCCGAGTTGGCAGCGAACGTGCACAGAGATTGGAGTCAAGGATTCAGGTGAGGTGAaagcgtttttgtttttttttttgttcacacgCACTTGTTTAGgtttataaacaaacaagtaCACGAATCGTGCAGTTTACTGTATTCTGATTTTAAATTCGTTCCAATGAGGACGTGGCTTTTTATTACCGCCCTAGAGTCATCGCATGCTTGCGATCGGATGAAATGTCTCTTTAGTCTTCACCACTACTCGCTCTTTCGAATTTTTCGCAAAGCTGTCTCTTCATTCACAGAGGAACTGTTAGGGGAAACCTGTCGTTTGTTGAATGTTAGTTTAAGGTCAGCTGTCGCAGACACTGGCGTTAGTTTAGGCCTTCAAGCTCCCCTCGTCTGCACTTTATTTAAGGTCTATCTCACAGATCTTACTCTTCTGATGTGAAATACTGGGGATGAGTATCTTCCCCTTTGAAGGAGTCTCTCTTTGAAGGGGTCACTTGTTGCTCTTTACACGAGTATGGGTGTCTTTTTTCCACAAGCTTTTCTTCTATCAGCTCATAAGCAAAAATTTGCAGAAACCATCTATTTATCAGTGTTACGAAGGGGTGACCTGTTTGTTCTGACAATTAAagacatatattttttcagcttAGATTTGATTTtcaattgttactttttttttcttccactgtTTGAACCATGTTTTCTTAAGCGTACAGTGGGGGTTTACACCATGCGACTGCTAGACCATGTGCCAATTGAGGATTTgttatgaagatatttagtcatATCTGTGATTTACATGATTTCTGTGGGATGAGATTTGCTGAAGCTACTACTTCTAACTACCCATACAAATGGTTGATTTGGAGAAATTGTTGATTAAACCAGCTTAGACACCAGAAAA

Function

NR:

description
PREDICTED: GATS-like protein 2

GO: NA

KEGG:

id description
K23081 CASTOR2; cytosolic arginine sensor for mTORC1 subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238390.1 True 3026 mRNA 0.45 9 22020667 22036314

Neighbor

gene id symbol gene type direction distance location
polr2j polr2j,LOC107587688,LOC107595521,LOC107681903 coding downstream 19052 21999494 ~ 22001615 (-)
alkbh4 alkbh4,LOC107712145,LOC107710716,LOC107681883 coding downstream 21255 21997636 ~ 21999412 (-)
lrwd1 LOC107712122,LOC107587741,LOC107681902,LOC107710709 coding downstream 23250 21989945 ~ 21997417 (-)
bckdk bckdk,LOC107685622,LOC107681895,LOC106603456 coding downstream 36448 21967987 ~ 21984219 (-)
orai2 orai2,LOC107685638,LOC107595471,LOC107710735,LOC107681896 coding downstream 53531 21961430 ~ 21967136 (-)
doc2b doc2b,LOC107681901,LOC107685552,LOC106603746,LOC107587692 coding upstream 8985 22045299 ~ 22116025 (-)
LOC122345718 doc2b,LOC107587692,LOC107710708,LOC107689386,LOC107714896 coding upstream 101525 22137839 ~ 22211535 (-)
tmem248 tmem248,LOC107714897,LOC107572429,LOC107691774,LOC107689376,LOC107587695,LOC107710724 coding upstream 179025 22215339 ~ 22227188 (-)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 194566 22230880 ~ 22240821 (-)
tmem132e tmem132e,LOC107691770,LOC107689377,LOC107567383 coding upstream 270874 22307188 ~ 22555178 (-)
G38543 NA non-coding downstream 10560 22008886 ~ 22010107 (-)
G38523 NA non-coding downstream 144082 21867615 ~ 21876585 (-)
G38521 NA non-coding downstream 153206 21867128 ~ 21867461 (-)
LOC122345027 NA non-coding downstream 180567 21836313 ~ 21840100 (-)
G38515 LOC107712155,LOC107595525,LOC107685724 non-coding downstream 180994 21839359 ~ 21839673 (-)
LOC122344815 NA non-coding upstream 2046 22038360 ~ 22041267 (-)
LOC122346224 NA non-coding upstream 3587 22039901 ~ 22040034 (-)
G38634 NA non-coding upstream 755376 22791690 ~ 22793053 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding upstream 837657 22873971 ~ 22876437 (-)
G38747 NA non-coding upstream 1000143 23036457 ~ 23037470 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 136645 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 194562 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 401084 21612688 ~ 21619583 (-)
G38359 NA other downstream 651619 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 1084570 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 1090898 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 1565922 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 1715566 23751880 ~ 23756588 (-)
G38973 NA other upstream 1850989 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 1943350 23979664 ~ 23997739 (-)

Expression


Co-expression Network