ptcd2 (ptcd2,LOC107718650,LOC107700924,LOC107655927,LOC107757526)


Basic Information

Item Value
gene id ptcd2
gene name ptcd2,LOC107718650,LOC107700924,LOC107655927,LOC107757526
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12835956 ~ 12840936 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238396.1
agTTCTACCTGCTGAAGGATTAAATCTTATATTTAAGACTGACAGAAGACAGCTACTGCGCGAGTTCAGACGGACATGGCGCTGCAAAGACTGAATGCCTGCTCTCGTGCTTTGCTGACTGATTTGTCCAGAGTTGCAGTGCTTCGAGGAGCCATTAAATCAGACTGTTTAAAATGTCGAGATGGAGcTAAACGTTATCTCTTGTCTGAAGAAGTGGTGAAGCTGCAGGATTTTCAGCAGAGGAAACTTACTGTTGCCTTCCAGTTGTCAGAATCAAAAGgttaTTACTTTGATGAAGTGAATCggaaaatggagaaaaaacagcTTATTTCAAAGGATGAATTGAAAATACTTCTGTATTTGTGCCATTCTGTTGAAGATGTTTTTATGGCGAGAAATGCTATGTACAGATACCATGAAGAGAATCGTAACATGAAACAATTTGTGGAATTCAAGTTCGGCCCTCTTTTCATGAGGTTATGCTATGAGCTGGGTTTAGAGGAGCTGGGAGCCAGAACTCTGACAGATCCAgCTCTCAAAGGATTCTTTTTAGACTCTACATCCTTTAATCTTGCTATCGACATGCTTTTTACTAAACAGCATTACGAAAGTTGCCTGGAGGTGGTGggagaaattaaaaaacaagGAGTGCCATTCAACAAAGACACCTTCATGCTAGCCTTTGCAGCTTGTTATAAACTGAATACCTCAAAGTCATATCATATCTGTTTGACCCTGCTGGAAGAAGGTCAGGCAAAAGGCAGCTTCATCCCTCGACATGCCTACTGCTTTGCAGCTGCTCTTGCTCTCAAACAGAATGATATAGAGAGAGCCCAGGCATTCTACTCTCAAATAATGTGCACGAACAGTCGGCTATGTCAGAACCTAcggGTTCTCATATTGGCTATGAAAGGGTCTATGAAAGAAGCCGTTTCTGTCCTCACAGCAGCCCTAGTTTTAGAGTCGCCAGTGTTTGTGAAGAAACCAGAGTTCTCTCAGGAAGTGGTTAATGTATTGAAGAACAAGAGTGTCGGTGGGCTGTGGGAAAGGGAGGTAGAGCTGGTGGTGAAACAGTTAGTGGAGGCTGGCCAGATCACCAAGCAGAGCATCGACGATTTCTTGTGTCACACTGCCTCTAGAAGGAGAATGCCTCAGGGAATACTGGAGCGGGAAAGAAAGACTACCCGGAGAAATCAAAGAACTCTGCAGTCCATACTACTGATGGAGTGAACCCAGACTTTCAGATTTTGTGTATTATCACAGAAGCAAAGATGTTTTCTTGACCTGCACAGTCCGAAGAAGCAGCCAATTCAAGATCAGGCTTTGGCATCATCTACCTTCTTCTGTTTCATGCCAGCTACTCTACAGTAATCTTCGGTTATTGAAATCAAGTTAGGAATCAAATCACTTTAACaaagtgatgtttttataatttgagATCTTGTGCAGTTTTGTATTCCGATTTgagaaaatgtaagaaatgtgAATAGAGCAGCGGTCAGGTGATGACTTTGAACCGTCTTTACTCATCAACCCTGTTCATCTAGGTACAATACTTAAAAggttaataaacacaaaaacattttgttttgta

Function

symbol description
ptcd2 Predicted to be involved in mitochondrion organization and regulation of mRNA processing. Predicted to act upstream of or within mRNA processing. Predicted to be active in mitochondrion. Orthologous to human PTCD2 (pentatricopeptide repeat domain 2).

NR:

description
pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1

GO:

id name namespace
GO:0050684 regulation of mRNA processing biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K17711 PTCD2; pentatricopeptide repeat domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238396.1 True 1594 mRNA 0.42 10 12835956 12840936

Neighbor

gene id symbol gene type direction distance location
isg15 LOC107654605,LOC107597356,LOC107741227,LOC107595933 coding downstream 3218 12831666 ~ 12832738 (-)
svopa svop,svopa,LOC107696058 coding downstream 16278 12808510 ~ 12819678 (-)
ssh1a ssh1,LOC107727158,LOC107597277 coding downstream 41853 12762580 ~ 12794103 (-)
coro1ca coro1c,coro1ca,LOC107741221,LOC107696062,LOC107595940,LOC106584990 coding downstream 79806 12716051 ~ 12756150 (-)
selplg NA coding downstream 121425 12712197 ~ 12714531 (-)
map1b map1b,LOC107596172,LOC107655889,LOC107757527,LOC107597920 coding upstream 3315 12844251 ~ 12863698 (-)
ttc33 ttc33,LOC107596169,LOC107757511,LOC107655901 coding upstream 53648 12894584 ~ 12911763 (-)
eda2r LOC107598184 coding upstream 102389 12943325 ~ 12954845 (-)
ophn1 ophn1,LOC107700916,LOC107596712,LOC107596162,LOC107655920,LOC107757505 coding upstream 179410 13020346 ~ 13050778 (-)
rxfp2l rxfp2l,LOC107655900,LOC107700901,LOC107596199,LOC107757506 coding upstream 277431 13118367 ~ 13150538 (-)
G35966 wscd2,LOC107597274,LOC107743343,LOC107696066,LOC107595945 non-coding downstream 196579 12637190 ~ 12639377 (-)
LOC122345380 NA non-coding downstream 229018 12602216 ~ 12606938 (-)
G35949 NA non-coding downstream 298154 12532390 ~ 12537802 (-)
G35928 NA non-coding downstream 320406 12463906 ~ 12515550 (-)
G35923 NA non-coding downstream 385191 12448214 ~ 12450765 (-)
LOC122345905 NA non-coding upstream 39125 12880061 ~ 12884157 (-)
G36004 fbp1b,LOC107718665,LOC107655925,LOC107596168,LOC107757529,LOC107596723 non-coding upstream 72690 12913626 ~ 12916814 (-)
G36009 NA non-coding upstream 83807 12924743 ~ 12926462 (-)
G36012 NA non-coding upstream 92535 12933471 ~ 12933779 (-)
G36048 NA non-coding upstream 214633 13055569 ~ 13056705 (-)
G35936 NA other downstream 329998 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 516271 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 666546 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 1020012 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 1183329 11583780 ~ 11652627 (-)
G36047 NA other upstream 212908 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 738125 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 813358 13654294 ~ 13699226 (-)
G36298 NA other upstream 876188 13717124 ~ 13718543 (-)
G36336 NA other upstream 976806 13817742 ~ 13818942 (-)

Expression


Co-expression Network