pebp1 (pebp1)


Basic Information

Item Value
gene id pebp1
gene name pebp1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3417904 ~ 3422144 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238407.1
AATAAAACAACTGTAGGGGGAGACAGAAGCTCCACTTTTCAGCCGCGTTGACATCTCGCAAGAGCATTGAGTCATCATGCCTGTAGATATTAATGAATGGACGGGTTCTCTTGCGCTTACAGAGGTGGAGGAACAGCCGGCCAAGCCTCTAACTGTCAGATATGGCTCTTTGGAAATCGACGCTCTGGGGAAAGTGTTCACTCCCACTCAGGTTCAGGGTCGGCCCGCGTCCATCGACTGGGACGGATGTGACCCCGGGAAGCTGTACACGCTGGCCATGACCGATCCAGATGCACCCAGCCGAAAAGAGCCCAAGTTTCGGGAATGGCATCACTTCCTCGTCGTCAACATGAAAGGAAATGACATCACCAGTGGATGTGTCATGTCTGACTATGTCGGTGCGGGACCTCCGAAGGGAACAGGCCTCCATCGTTACGTGTGGCTGGTCTATGAACAGTCAGAGAGCATCAGCTGCAGCGAAGCGGTCCTCACCAACCGCTCCGGAGACAGCCGCGGGAAGTTCAAGATCCAGAGCTTCCGCAAGAAGTACGGCCTCGGGGCTCCGGTCGCAGGCTCTTGCTTCCAGGCCGAGTGGGACGACTACGTGCCCAAACTTTACCAACAGCTTGCCGGCAAATAGTGGACTTCTCACTGATTAACTAAACCATTCTTTGCTTTGTAGAAAAACCTTTGCCTTCATTTATTGTCACTTCATCAGGAGACTGccttcagtttaaaaaaaaaaaaaaaaaaaaaaaaaaaagacgaattTGTGTTGCGTTTGTGGATGCACCTTTAATTTCACGAATAAAAACCAGACGCCTCTTG

Function

symbol description
pebp1 Predicted to be involved in negative regulation of MAPK cascade. Is expressed in retina. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human PEBP1 (phosphatidylethanolamine binding protein 1).

NR:

description
phosphatidylethanolamine-binding protein 1

GO: NA

KEGG:

id description
K06910 PEBP, TFS1; phosphatidylethanolamine-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238407.1 True 828 mRNA 0.50 4 3417904 3422144

Neighbor

gene id symbol gene type direction distance location
hk2 hk2,LOC107668748,LOC107755855,LOC106585103,LOC108255852,LOC108411364,LOC107708252,LOC107599625 coding upstream 605484 2759355 ~ 2812420 (+)
LOC122345789 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 coding upstream 692480 2717013 ~ 2725424 (+)
LOC122345384 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 coding upstream 886311 2528502 ~ 2531593 (+)
LOC122345419 man1b1b,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 coding upstream 1140870 2270213 ~ 2277034 (+)
LOC122346086 LOC107587426,LOC107757959,LOC107709681,LOC107560220,LOC107681216,LOC107560224,LOC107709689 coding upstream 1153319 2249658 ~ 2264585 (+)
suds3 suds3,LOC107569732,LOC107708245 coding downstream 75105 3497249 ~ 3505203 (+)
hspb8 hspb8,LOC107720866 coding downstream 188328 3610472 ~ 3619055 (+)
LOC122345442 NA coding downstream 200998 3623142 ~ 3650703 (+)
znrf3 znrf3,LOC107707852,LOC107656810,LOC107560969,LOC107755873,LOC107702225 coding downstream 255444 3677588 ~ 3747908 (+)
LOC122345408 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding downstream 481834 3903978 ~ 3940975 (+)
G32956 NA non-coding upstream 28417 3388301 ~ 3389487 (+)
G32955 NA non-coding upstream 30176 3387494 ~ 3387728 (+)
G32934 NA non-coding upstream 124346 3293274 ~ 3293558 (+)
LOC122345883 NA non-coding upstream 231382 3180809 ~ 3186522 (+)
G32819 sema4c,LOC107557380,LOC107708238,LOC107699920,LOC107697240 non-coding upstream 393416 2948093 ~ 3024488 (+)
G32992 NA non-coding downstream 83504 3505648 ~ 3506710 (+)
LOC122346010 NA non-coding downstream 229265 3651409 ~ 3652844 (+)
G33018 xbp1 non-coding downstream 237723 3659867 ~ 3662929 (+)
LOC122345412 NA non-coding downstream 834034 4256178 ~ 4282937 (+)
G33077 NA non-coding downstream 906054 4328198 ~ 4329596 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other upstream 74834 3328800 ~ 3343070 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other upstream 768543 2627084 ~ 2649361 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other upstream 1149710 2265145 ~ 2268194 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other upstream 1398754 2010217 ~ 2019150 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other upstream 1512405 1900627 ~ 1905499 (+)
G33015 NA other downstream 183042 3605186 ~ 4144396 (+)
G33174 NA other downstream 1200363 4622507 ~ 4623060 (+)
fbrsl1 LOC107656817,LOC107600129 other downstream 1221957 4644101 ~ 4902403 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other downstream 2182189 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other downstream 2203123 5625267 ~ 5648047 (+)

Expression


Co-expression Network