imp4 (imp4,LOC107595005,LOC107709870,LOC107750176,LOC107592341,LOC107672800)


Basic Information

Item Value
gene id imp4
gene name imp4,LOC107595005,LOC107709870,LOC107750176,LOC107592341,LOC107672800
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9792187 ~ 9796033 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238424.1
tttgaaatgccgTAACACATTTGTTCGTTGTCGGTGATTGGAACAGAGGATTGACCAACAGGAAGTCGTTATAGTATCGGCAAGGCTGAATTATCACGTGTAGTTGAGCAAAATGTTGCGGCGAGAGGTAAGACTGAGAAAAGAGTACCTGTACAGAAAAGCACAGGAGGACAGACTGTACACCAttgaagagaaaaaacaaaaggtcAAAGCTGCTTTAGATGAAAATCGTCTTTTACCCACTGAAGTTCGGAAGGAGGCTTTAAACTTACAGAAACTGTTGGAGTTTGACGATGAGGGTGGAGAAGGTGTTAGTTCTCATATGGACGATGAGTACAAATGGGCAGGAGTGGAAGACCCCAAAATAATGgtcacaacatccagagaccccAGCTCTAGACTCAAGATGTTTGCCAAAgaaatgAAGCTTATGTTTCCAGGGGCCCAGCGTATGAACAGAGGAAACCATGAAGTTAAAACATTAGTACATGCTTGCAAGGCTAATAATGTCAGTGATCTTGTCATAGTTCATGAGACCAGAGGCCAACCAGATGGTTTGGTGGTGTGTCACCTTCCTTTTGGCCCGACGGCCTACTTCACATTGTATAATGTGGTAATGAGACATGACGTCCCAGACATTGGCACCATGTCCGAGGCCTTCCCTCACCTCATCTTCCACAACTTCACGTCACGTCTTGGCCGAAGGGTCTCTAACATCCTAAAGTATCTGTTTCCTGTGCCCAAAGAGGACAGCAGACGTGTTATAACATTTGCAAATACAGACGATTTCATCTCTTTCAGACACCATACCTACAAGAAAACCGATCATAAAAACGTTGAGTTGACAGAGGTCGGACCCAGATTTGAGATGAAATTGTACATGATCAAGCTTGGCACATTGGAGAATGAGAATACTGCAGATGTTGAGTGGCGACTCCATTCTTACACACGCACTGCCAAAAAGAGGACATTTTTAAGTGTGGAATAGCCCTATGTACTTGTGAGAAACCTGCAATGTTCAAAGTGGACATTTTCAATGTAATAGtggtctttttttcatttaattgtgacattttaaatatggatgaatttctttcattattataatgttgACACTTCcgcaattaaatgttttgtacagAGTTACCtggacaattaaaaaaaaaaa

Function

symbol description
imp4 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human IMP4 (IMP U3 small nucleolar ribonucleoprotein 4).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238424.1 True 1168 mRNA 0.42 9 9792187 9796033

Neighbor

gene id symbol gene type direction distance location
araf araf,LOC107709867,LOC107595004,LOC107673380,LOC107750175,LOC107672764 coding downstream 453 9780838 ~ 9791734 (-)
tbx3b LOC107709835,LOC107592413,LOC107673376 coding downstream 34354 9754034 ~ 9757833 (-)
tm2d2 tm2d2,LOC107709865,LOC107673424,LOC107750179,LOC107672780 coding downstream 39230 9750652 ~ 9752957 (-)
unc5db unc5db,unc5d,LOC107673416,LOC107709861,LOC107659286 coding downstream 110386 9579488 ~ 9681801 (-)
hdr LOC107659287,LOC107721544,LOC107673363,LOC107709863,LOC107594999 coding downstream 216380 9571202 ~ 9575807 (-)
rabl6b rabl6b,rabl6,LOC107750171,LOC107672784,LOC107673384,LOC107709868 coding upstream 2261 9798294 ~ 9808373 (-)
tcn2 tcn2,LOC107595007,LOC107709872,LOC107673413,LOC107672782,LOC107750173,LOC107592334 coding upstream 12836 9808869 ~ 9813130 (-)
si:ch211-102c2.8 LOC107595037,LOC107709829 coding upstream 20835 9816868 ~ 9829040 (-)
tmem150aa tmem150aa,LOC107750168,LOC107672765,LOC107673390,LOC107709874 coding upstream 35966 9831999 ~ 9841079 (-)
tango2 tango2,LOC107673391,LOC107595038 coding upstream 47281 9843314 ~ 9861374 (-)
G34877 NA non-coding downstream 13949 9777633 ~ 9778238 (-)
G34871 NA non-coding downstream 25580 9766268 ~ 9766607 (-)
G34869 NA non-coding downstream 27655 9764073 ~ 9764532 (-)
G34704 NA non-coding downstream 544146 9246920 ~ 9248041 (-)
G34594 NA non-coding downstream 731373 9013306 ~ 9060814 (-)
G35035 NA non-coding upstream 485376 10281409 ~ 10296141 (-)
G35047 NA non-coding upstream 541714 10337747 ~ 10341167 (-)
G35107 NA non-coding upstream 582733 10378766 ~ 10378998 (-)
G35139 abca2,LOC107672707,LOC107730718 non-coding upstream 716897 10512930 ~ 10513285 (-)
G35142 NA non-coding upstream 720638 10516671 ~ 10517342 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 389564 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 571659 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 862134 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 1114469 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 1360601 8429700 ~ 8431586 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 528926 10324959 ~ 10335343 (-)
G35122 NA other upstream 665175 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 1072331 10868364 ~ 10874064 (-)
G35384 NA other upstream 1127894 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 1164278 10960311 ~ 10969118 (-)

Expression


Co-expression Network