CI01000004_15400244_15414139


Basic Information

Item Value
gene id CI01000004_15400244_15414139
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15400244 ~ 15414376 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15400244_15414139.mRNA
ATGATTCCCGTCAAAACGTTTGTTAAAACAAATCTCAGTGTCCCACAAGAAGAATGTCATGGTGGGCTCGACTGGAAAGATAAACAGAGTCAGGAAGAGATGGAGGGGGACAGCTGTGTGTCAGCAGCCTCCAGTAGTGCCGCTCCAGTGAGCTCTACACCCCGATCCAACACTCCCACGGGCTCCCAGCCCAACTCCATTCCCCTGGGAAACGTCTCTTCAGACAGGCAGGCGGTCCAGGTAATCCAGCAGACGTTACACAGACCACAGAGCATGACAGCTCAGTACCTGCAACAGATGTATGCTGCCCAACAACAACACATCCTGCTGCAGACGGCTGCACTACAACAGCAGCATCAACAAAACCTCACCGCTGCACAAATCCTGACCACTACAGAGCAGATCACCATGCCAACCTCTCCTGTAACGCAGCCAATAGGTCGCCTCCAGGTCACTAGCTCCAATAGCACAGGGGGGGCCATATCCCAGCAGGCCATGCTTCTAGGAAACAGCTCTCCCACAGGTAGCCAGGCCCAAATGTATCTGCGCACTCAGATGTTGATTCTTGCTCCTGCTGCCACTGTAGCTGCCGTTCAACCTGATCTGACTGTTGTGAGTTCAATGTCCTCTCATTCAGCATCATCACAGGTTCAAAGCTTGGCTCTCCGCACGCATCTCCCTGGAGCTCTTGCTACTGCCCAGAACATCCAGATCAAGCCTCCTCTTCAAGGCCAGACGCTGGTGTCCCCCCTTCCCAAGATGTCCATTTGCCCACTGAAGTCCACACAGCTGTCCCAGAACCTGGTAGAAACTTCTAGAAGTGAGTCCCTGTTGACCGATGTCACTCAGCCACCATCAGCTCAACCACACATTCCTCCTTCAACGTTCACACCAGTCCAGTCTCATACGCTGGTCAGACACCAGTTGCATTGCCCTTCCAGCCAGAGGATGACGCCCCACCAGCTCATCATCCAGCAGAGTGCCGCCGCTCACAGACAAGTCCAGCCCATCGCTCTGCGTGTCACACCGCAGGACAGCTGTCCTCCGCCCCTTGCCCTGCAGACCCGCACCACTCCCACTACAGCCACCGTCCAATCACAGCACACAGAGTTCCTCTCAGTGCCCTCCTCTGCAAATCAAGCAGTCAGTCAGTCGGCAGTTGTGTCTATGTCCACAGTTCCTCCTGCAGCGCTCCCTGACCCTCCACCCCTTCATCTGGGCCCAGTTCTAGAGCCGGTCTCCCAGTATTCACACCTGGCCTGCCCTCCTCCTCTCACCATGGGTCTGCCCAGGCTGGTCCAGCCACAGAGACTCTCTCTGCGCTCAGTTCAGACTGTAGCTGTGCAGTCTGACCACATGCTGGTGTCTGAAGAGGAGCACCCAGTCGATGAAGCAGTAGTTCAGTTGCCTTTTCAGAATCTACCGCCACCACAGACAGTGGCAGTGGACTTAAAGATGCAACCTGCTACACAAACAGAAGCTCCCTCGGCGACGCCGTTGTTGAAGGAGAGTGGAAGCATGAATTTGTTGAAGGATGTAGAACACGTGTGTCCTCAGTACATCAGTGCGCCCACCCCGCCACCACGGTCCCCACCAGACGAGTCACAGAGAAGCTCTGATGATGTAACAGCTCAACCAGAAAACCATACAGCTGATCCGGACCAACCATGCATTTCATCGAACAGATCTGTGATCCGGTCACCGGAGGACCCTACACATGCCAACAGTTCCCCCCCTCCCCTCCTCTCCTCTGCGGTAAGAAGCACCAGCAGGCTTCCCCCAGCCAGCCTCCCAGGGAACCCTGAGGGTCGGCCCTCACAGGCCATCGTTAGACCTCACATCCTCACACACCTCATTGAGGGCTTCGTCATCCGAGAGGGCCTGGAGCCGTTCCCGGTGAGACGTGCTTCCCTAGAGATGAACTTACAGGCCACACTGCCAGAAGATAGAGAGGATGGAGAATCAGCCCGGGATGACTGCCTTATGGATGCGGAGCATCCGGAAAACTCCACTGATTCCGACATTGACAACCCTCCCGCTGAGGATGAACAGACAGATGAAAACCTGCCTGACGTACTGGAATGCGAGTTTTGTGGGAAGAGAGGCTTCGCTCGTACCTTCCTCAGATCCAAACGCTTCTGCTCCATGACATGTGTCAGAAGATTCAACGTAAGCTGTAAAAAACGCCTAAACCTGTTCAGGCCAGAAAAAGTTGGCCGGTGGCCCCACAGACCCATGGGCAGGCGGGGGAGACCACCTAGTCGTGTAAACGGTGGGTCTAGGGAACACTACCTCAGGCAGCATCTGCAAGATTCCCATCGTTCCAACGACAACCAGAGGGTTTCCGATTCAGTGTGGATCGAGAGAGAGGAGGAGGAGGATCCACCAGGCCCGATGACGACAAGGCTGCGTTTGCAGGCCGAAAGAGAGAAGGAGCAAGACAGAGAAAGAGAACAGAGCCGACTGGAGAGCTGCAGCAGCTCTGACTGTGTTCTTGACTCGAGTCCCTCACAGTGGAGTGTAGAGCAAGTGTGCTCCTTCATCAGCTCTTTACCAGGGTGCCATGATATCGCTGCAGAGTTCCAGTCACAGGAGATCGACGGACAGGCCCTGTTGTTGCTCACAGAGGACCACCTCATGAACGCTATGAACATGAAACTGGGCCCTGCGCTCAAAATCTGTGCACAGATCAACGCTCTCAAAGAACCTTAGGCTCATCTTTCCACAGCTGTCACACAATATCTGAGAGTCCGCTTCCTCCAAAGTGCCATGATTTCAGTGTGTGGCCATTCTACAGATACTGTAGACACTCATGGGGACCTTCTTCTTATACCTCAAAGTTTCATGGTGGACTTGTTATCTTGGATTTCATTCCATTCAATCTGATTGTAAGGTAAAGTTTTGTATAATATCTAGTACTAAATTCAGATCTTGTATATTGGATTTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15400244_15414139.mRNA True 2949 mRNA 0.54 14 15400244 15414376

Neighbor

gene id symbol gene type direction distance location
CI01000004_15325044_15326740 NA coding upstream 73457 15325044 ~ 15326787 (+)
CI01000004_15316323_15317231 NA coding upstream 82902 15315947 ~ 15317342 (+)
CI01000004_15291659_15296777 NA coding upstream 102397 15291659 ~ 15297847 (+)
CI01000004_15277204_15286845 SAMD7 coding upstream 113257 15277204 ~ 15286987 (+)
CI01000004_15260416_15262090 APODA.2 coding upstream 138004 15260239 ~ 15262240 (+)
CI01000004_15444403_15453408 SPPL2, SPPL2B coding downstream 30027 15444403 ~ 15454177 (+)
CI01000004_15631508_15632389 NA coding downstream 217054 15631430 ~ 15632403 (+)
CI01000004_15645965_15650241 NA coding downstream 231589 15645965 ~ 15650274 (+)
CI01000004_15687242_15691238 NA coding downstream 270886 15685262 ~ 15691277 (+)
CI01000004_15694735_15698103 SDR39U1 coding downstream 280359 15694735 ~ 15698421 (+)
G34061 NA non-coding upstream 128339 15271644 ~ 15271905 (+)
G34055 NA non-coding upstream 163861 15236130 ~ 15236383 (+)
G33896 NA non-coding upstream 176330 15223661 ~ 15223914 (+)
G34032 NA non-coding upstream 240184 15106736 ~ 15160060 (+)
G34031 NA non-coding upstream 293545 15106422 ~ 15106699 (+)
G33857 NA non-coding downstream 4885 15419261 ~ 15425806 (+)
G34090 NA non-coding downstream 18792 15433168 ~ 15433373 (+)
G34100 NA non-coding downstream 66887 15481263 ~ 15481530 (+)
G34101 NA non-coding downstream 67544 15481920 ~ 15482315 (+)
G34141 NA non-coding downstream 141479 15555855 ~ 15556213 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 308275 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1363344 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2744533 12646838 ~ 12652570 (+)
G31865 NA other upstream 3205097 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3732585 11666900 ~ 11667659 (+)
G34220 NA other downstream 524981 15939357 ~ 15939950 (+)
G33815 NA other downstream 649039 16063415 ~ 16066464 (+)
G34400 NA other downstream 1562952 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015727 phc3 coding NC_007113.7 CM002886.2 37430917 ~ 37436938 (+)
bowfin (Amia calva) AMCG00009086 NA coding CM030126.1 CM030126.1 24792402 ~ 24805280 (-)