pxmp2 (pxmp2,LOC107597355,LOC107595932,LOC107727154)


Basic Information

Item Value
gene id pxmp2
gene name pxmp2,LOC107597355,LOC107595932,LOC107727154
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12826590 ~ 12829604 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238450.1
ACCACGCACGCGACGTTCGACTCTCCACATTATAGATCTGCAGTAAAAACACCGAGCTCTCATGACCAGAGTGTACAGACTTCACTAGTTAACCAAACTGAAGATGCCAACGCAAAGTGTACTTATCCGTGACTCCTCTTTTGTGGCGAGGGTGCTGCAGCAGTACTTGAGTTTGTTAAAGAAATATCCTATCATCACCAAATCGGTTACGAGTGGTGTTCTCTCTGCTTTGGGAAATCTACTGTCCCAGGCGTTGGAGTACAGGAAGAGCAACAAAGAAAATagcccaaaaaagaaaatcaatgttCTGGGACCTgtacattttgcaatatttggACTTTTTATCACAGGTCCAGTCAGTCATTACTTCTACCATCTCCTGGAGGTGCTGTTGCCAAACACTATTCCGTACTGCCTGATCAAGCGCCTGCTGCTGGAACGTCTAATATTCGCTCCTGCTTTCCTCTTGCTCTTTTATGTGGTTATGAACGCTTTGGAGGGCAAGACTCTCTCAGATGttcaaaacaaacttaaaacaaGTTACTGGCCTGCAATGAAGATGAACTGGAAGGTTTGGACCCCGATTCAGTTTATCAATATCAACTATGTACCTGTACAGTTCCGAGTTCTGTTTGCAAACCTGGTTGCTTTATTCTGGTATGCCTATCTCGCCTCGGTCCGGAAATGAAAGCACAAAACCAGCTACAGTAGGCCTTGGTTGGTTAAAATCCAGTTTGTGCCTTTAATGGACTGCTGCACATCAGATACGTTTTAAAAGTCTTCCAGAAAAACAGATTGGAAATACTGGCCAGTTTCTGTAAAATAACCGTGATGTCTTTCTACCAATTGTGAAAGCACTGACAATGATGATTGATTGTTGTATTtgactaattaaaatatattgataacaaaaata

Function

symbol description
pxmp2 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human PXMP2 (peroxisomal membrane protein 2).

NR:

description
PREDICTED: peroxisomal membrane protein 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13347 PXMP2, PMP22; peroxisomal membrane protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238450.1 True 916 mRNA 0.42 5 12826590 12829604

Neighbor

gene id symbol gene type direction distance location
usp30 usp30,LOC107727160,LOC107741225,LOC107597278,LOC107696057,LOC100537262 coding upstream 412 12820605 ~ 12826178 (+)
LOC122346075 LOC107654625,LOC107597279,LOC107741224,LOC107727161,LOC107696048 coding upstream 23720 12798124 ~ 12802870 (+)
dao.3 LOC107727161,LOC107654625,LOC107597279,LOC107741224 coding upstream 29152 12794219 ~ 12797438 (+)
ficd ficd,LOC107741218,LOC107711781,LOC107597275 coding upstream 142863 12680681 ~ 12683727 (+)
wscd2 wscd2,LOC107597274,LOC107743343,LOC107741214,LOC107696066 coding upstream 187316 12595277 ~ 12639274 (+)
ptger4b ptger4b,LOC107700922,LOC107757528,LOC107596171,LOC107596756,LOC107655926 coding downstream 56625 12886229 ~ 12892279 (+)
fbp1b fbp1b,LOC107700920,LOC107718665,LOC107596168,LOC107655925,LOC107757529 coding downstream 83051 12912655 ~ 12916020 (+)
erlin2 erlin2,LOC107655923,LOC108443303,LOC107718651,LOC107596165,LOC107700919,LOC107757530 coding downstream 86566 12916170 ~ 12926498 (+)
ch25hl3 LOC107700893,LOC107718661,LOC107597898,LOC107596167,LOC107655924,LOC107757531,LOC100005337 coding downstream 100619 12930223 ~ 12935152 (+)
ar ar,LOC107757532,LOC107596701 coding downstream 136332 12965936 ~ 13022773 (+)
G35847 NA non-coding upstream 58040 12767948 ~ 12768550 (+)
G35843 NA non-coding upstream 154384 12567184 ~ 12672206 (+)
LOC122345920 NA non-coding upstream 179502 12645284 ~ 12647088 (+)
G35864 NA non-coding upstream 184945 12640267 ~ 12641645 (+)
G35855 NA non-coding upstream 275410 12548666 ~ 12551180 (+)
G35903 NA non-coding downstream 52656 12882260 ~ 12882512 (+)
G35904 NA non-coding downstream 55401 12885005 ~ 12885284 (+)
G35905 NA non-coding downstream 55727 12885331 ~ 12885934 (+)
G36062 NA non-coding downstream 279028 13108632 ~ 13108853 (+)
LOC122345423 NA non-coding downstream 470151 13299755 ~ 13312652 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 19239 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 121345 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 297800 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 570918 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 883480 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 1154493 13984097 ~ 13985706 (+)
G36495 NA other downstream 1460816 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 1470439 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 1503419 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 1517958 14347562 ~ 14349991 (+)

Expression


Co-expression Network