stxbp1b (stxbp1b,LOC107560235,LOC107587321,LOC107690675,LOC107715760,LOC108423604,LOC108255382,LOC107681214)


Basic Information

Item Value
gene id stxbp1b
gene name stxbp1b,LOC107560235,LOC107587321,LOC107690675,LOC107715760,LOC108423604,LOC108255382,LOC107681214
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8938254 ~ 8949378 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238499.1
GTTTAAAAGACATGCATCGTATGTGAACGGCGGAGCTGCGGAGGCGTGCGCCGGGATTAGGCGTCGACGCGAGCTCTGAGCGCGCGCGCGCCCCGCGAGTCCGACACACCGGCAGAGAACAGGACACGACATGGCATCTCTGGGGCTGAAGGCGATTGTCGGAGAAAAGATTATGAACGATGTCATTAAGAAGGTGAAGAAGAAGGGAGAATGGAAGGTTTTGGTGGTGGACAAGCTCAGCATGAGAATGGTCTCATCATGCTGTAAAATGACAGATATTATGTCTGAGGGAATAACAATTGTCGAGGACATAACCAAGCGACGCGAGCCTCTTCCTACCATGGAAGCCATATATCTCATTACTCCATCGGATGAGTCAGTTGAGGGACTCATCAATGACTTCAGAGATCCCCGAAATCCCATATACAGAGGGGCACACGTGTTCTTCACAGACACAATTCCAGACTCTATGTTCAACTTGATAAGTAAATCCCGTGCCTCTAAATCCGTAAAGACACTGACTGAGATTAACATCGCCTTCCTGCCCTATGAATCACAGGTGTTCTCAGTGGACAAACAAGATGCCTTCCAGGATTTCTACAGCCCGTTTAAAGCTGATGTAAAGAATCAGGTGTTGGAGCGTTTAGCAGAGCAAATAGCCACCTTGTGCTCCACACTGAAAGAGTACCCAGCTGTTAGATACagaggAGAGTATAAAGACAATGCAGTCCTGGCCCAGATGCTTCAGGACAAACTGGACGGTTACAAAGCAGATGACCCCACTCTGGGAGAGGGACCTGATAAATCACGTTCCCAGCTATTGATTCTGGATCGGGGTTTTGACCCTGTCACGCCACTTCTGCACGAGCTCACATTTCAGGCCATGGCCTATGACCTGCTGCCCATTGAGAATGATGTCTACATGTATGAGACCAGTGGAATGGGTGACACTCGTATGAAGGAGGTGCTGTTGGATGAAGACGACGACCTGTGGATGACTCTGAGACATAAACATATAGCAGAGGTGTCCACgGCTGTGACTAAATCACTTAAGGACTTTTCTGCGAGCAAAAAGATGAACACAGGAGAGAAGACCACCATGAAAGAGCTCTCCCAAATGCTTAAAAAGATGCCACAGTACCAGAAAGAGTTAAGCAAGTATTCAACTCACCTGCACTTAGCAGAAGACTGTATGAAGCATTACCAGGGTACAGTGGACAAACTGTGCCGTGTCGAGCAGGATCTCGCAATGGGCACAGATGCAGAGGGTGAGAAGATCAAAGATCCCATGAGAGCCATCGTACCCATCCTACTGGACGCCAACGTTACCATCATGGACAAAATCCGAATCATCCTGCTCTACATCTTCCTCAAGAATGGTGTGTCGGAGGAGAATCTCTGTAAGCTCCTCCAGCATGCTCAGATCCCTCCAGAGGACAGCGACATCATCTCTAATATGGCCCATATGGGGGTTCCCATCATTTCAGAGCAAGCAACCACGCGTAAAGGGAAGAAATCTGACCGCAAGGAAAGAATCAGCGAGCAAACATACCAGCTCTCCCGATGGACTCCTTTGGTCAAAGACATCATGGAGGATGCCATTGAAGACAAGCTCGACCCAAAACAGTACCCTTACATCTCCACGCGCACAGCATCCTCAAAGACGACCACAGCTACCAGCGCACGCTATGGAAACTGGCATAAAAACAAGAGCCCAGGAGAGATACGCAACGGCCCACGCATCATGGTCTTCATCATTGGGGGGGTGACCTACAGCGAGATGCGCTGCGTCTATGAGGTCACACAGGCCAACGGCAAATGGGAAGCTCTCATCGGCTCCACCCACACCATCACTCCCGTTAAGTACCTCAAGCATCTGCAGCACCAAGACTTCCTGGACCCTAACGCAGCCCCCGAGGACCAGCTTCCCGAAGAAGACAAGTGATGAAGGCAAGAAAAAAGAATGTAGTGCCGTCATGGGCCTGACTCGCTGTTCTGATGCCATCAGTGCTCCTACTAGATGAGCGTTAAGACACCCATACAACATCAGTACAATATCAATATATCAGGCAGCCTGCCATCCTTCAGCACTTCCCTCGGCGATAGGCTATAGTAAAGTATATTACATTAATAGCctctgttatatttattaatcaccTTAATGTAAACCTCAGATTGTATCAAATGTCATTATCAAAAATAAGGAATTATTTAGGTGTCGTTCTCCATTTTTGGTAATATGGGACCAGTTGACCATTAGGTAGATGAAATAATAAGAGAAGATTATTTGAACACAGCATAGCAAATTGAGTTTGAGTTTCCTTTTCTGTAAAACTATTTTGAATTGAATCAGTAGTTTGACCTGCTATGCAGCGTCTGCCAAGCATGATTGTGTCTGTTTGATACCGGATGTCCCATTGTGAATATCAACtgctttgtgttattttaatatcgTGGCTTGGAAACAATAGTTACAGTACTTGTCGTGTATATAGACTTTGTTAATATAGTAAAACCTCCCTTGctgatattatatttttcttttgcatatcGACCGTTTCTTGCGTAGCAATGTAGTATGAatgctttttatgtaataatcTGTTATTTACGCTAAGAATACACATTCCtgctgtgtaaatatatatgccatattcaaatatatttaacatgtttaacaCATTAGAGGTGCAAACGATTGTCTTGTGCATATAGTACAATAAACTGGCTTCTGTTAAACATC

Function

symbol description
stxbp1b Predicted to enable syntaxin-1 binding activity. Predicted to be involved in intracellular protein transport; neurotransmitter secretion; and vesicle docking involved in exocytosis. Predicted to act upstream of or within protein transport. Predicted to be active in plasma membrane and secretory granule. Is expressed in brain and retina. Used to study early infantile epileptic encephalopathy. Human ortholog(s) of this gene implicated in West syndrome and developmental and epileptic encephalopathy 4. Orthologous to human STXBP1 (syntaxin binding protein 1).

NR:

description
syntaxin-binding protein 1-like isoform X2

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K15292 STXBP1, MUNC18-1; syntaxin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238499.1 True 2743 mRNA 0.46 20 8938254 8949378

Neighbor

gene id symbol gene type direction distance location
dpp7 dpp7,LOC107709692,LOC107560239 coding downstream 61756 8871280 ~ 8876498 (-)
tsc1a LOC107709700,LOC107597815,LOC107681228,LOC107690665 coding downstream 294464 8632895 ~ 8643790 (-)
ak8 ak8,LOC107681224 coding downstream 306928 8611512 ~ 8631326 (-)
ddx31 ddx31,LOC107597806,LOC107741444,LOC107587329,LOC107690663 coding downstream 328978 8594064 ~ 8609276 (-)
si:ch211-215c18.3 si:ch211-215c18.3 coding downstream 363671 8569849 ~ 8574583 (-)
LOC122344627 LOC107560223,LOC107711009,LOC107681213 coding upstream 42805 8992183 ~ 8997534 (-)
LOC122345801 NA coding upstream 50113 8999491 ~ 9001555 (-)
trafd1 trafd1,LOC107709840,LOC107681252,LOC107560230,LOC107587319,LOC107715758 coding upstream 52529 9001907 ~ 9008032 (-)
LOC122345922 LOC107560213,LOC107709824,LOC107560217,LOC107709823,LOC107560218,LOC107681212,LOC107715747,LOC107715746 coding upstream 73174 9022552 ~ 9023686 (-)
nsmfb LOC107709845,LOC107560226,LOC107587468,LOC107715753,LOC107681255 coding upstream 188043 9137421 ~ 9165718 (-)
G34583 NA non-coding downstream 4115 8933911 ~ 8934139 (-)
G34582 NA non-coding downstream 5174 8932860 ~ 8933080 (-)
G34579 NA non-coding downstream 10838 8927213 ~ 8927416 (-)
G34578 LOC107715750,LOC107587423,LOC107709820 non-coding downstream 11223 8925670 ~ 8927031 (-)
G34577 NA non-coding downstream 12937 8925052 ~ 8925317 (-)
G34606 NA non-coding upstream 39233 8988611 ~ 8991023 (-)
G34607 NA non-coding upstream 41723 8991101 ~ 8991313 (-)
G34594 NA non-coding upstream 63928 9013306 ~ 9060814 (-)
G34704 NA non-coding upstream 297542 9246920 ~ 9248041 (-)
G34869 NA non-coding upstream 814695 9764073 ~ 9764532 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 8201 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 260536 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 506668 8429700 ~ 8431586 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other downstream 523448 8411882 ~ 8414806 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other downstream 774228 8160877 ~ 8164026 (-)
vamp5 LOC107594989,LOC107681225 other upstream 266120 9215498 ~ 9220528 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other upstream 388450 9337828 ~ 9402623 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 1375581 10324959 ~ 10335343 (-)
G35122 NA other upstream 1511830 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 1918986 10868364 ~ 10874064 (-)

Expression


Co-expression Network