LOC122344882 (gnrhr4,LOC107715601,LOC107575089,LOC107690392,LOC107715190,LOC107691141)


Basic Information

Item Value
gene id LOC122344882
gene name gnrhr4,LOC107715601,LOC107575089,LOC107690392,LOC107715190,LOC107691141
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2052705 ~ 2058733 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238500.1
CATGATGAATTGTCTGTGAGCCTCACTGTGCAGCAGGTAGCTGAGCGAATGCAGCAAAAACACACGCTTTCACTCTTCAGTGATGAATGACAGCTCTCCAACATCTGAGAACATCATGTTTCACCAGCTGACTGCAGATGCTCTGAACGGTAGCTGTGACTACACCTTGCCCACGTGTAACAATAGCGCAGGTGAAGCGGCGTTGCAGCTGCCCACTTTTTCCATGGCGGCAAAAGTGAGGGTGATAATTACCTTCACTCTTTGTGCAGTGTCAGCTGTGTGCAACCTCTCCGTGCTGTGGGCTGCCAGCACCAACAACAAGCGCAAGTCTCACGTAAGAATTTTAATCATGAACCTCACCGTCGCCGACCTGCTGGTGACTTTCATCGTGATGCCAGTGGATGCGGCTTGGAACATCACGGTTCAGTGGTTGGCGGGGGATCTGGCTTGCAGATTGCTAATGTTTCTGAAGCTTGTGGCGATGTACTCCTGCGCGTTCGTGACTGTGGTCATAAGCCTGGACAGGCAGTCGGCCATTCTCAACCCTCTGGCCATCAATAAGGCtaagaagaagaacaaaataATGCTGAGCGTGGCCTGGGTGATGAGTGTTGTTCTCTCTGTCCCTCAGATGTTCCTGTTTCACAATGTGACCATCACGGTACCAGCCAATTTCACTCAGTGCACCACACGAGGGAGCTTTGTCAAACACTGGCAGGAGACCATCTACAATATGTTTACTTTCATTTGCCTCTTCCTGATACCTCTGGCCATCATGATCTGCTGTTACACAAGGATCTTGGTGGAGATCTCTCGAAGGATGACCAAAGGAAACATATCGTCAAAGGAAGTCCACTTACGGCGTTCAAACAGCAACATCCCAAAGGCCCGTATGAGGACTTTGAAAATGAGCATAGTCATAGTGACCTCTTTCATAGTTTGCTGGACTCCATACTATTTGCTGGGTCTTTGGTACTGGTTCCTGCCTGAGGATTTAGAAGAGACAGTTTCTCACTCACTTACTCacatactgtttatttttggacTCTTTAATGCGATTCTGGATCCCATCACTTATGGCCTCTTCACTATCCATTTTCGCAAAGGACTGAAGCGCTACTGTCGCAGCGCGGTTGTACTCACAGAGTCAGAGAATAATTCCATCATGACGGGCTCATTGAAATGCTCACCATCCCCATTTCGCATGAAAAGAGTGACCCAGACCGGTCCAGGAGCTGACCCGGAGCAGAATGCGGTGAGTGGGGAAGATAAGAAGCCGGCTGACAGCGAAAGCAAGGAATAGTGGCAACCCTACCAATCCAGCCTTGAAAGTGTCATTTGATTAAAGATACGCATGTGACAAGGCAGGCCTTGTACTGGCTGTCTAGCTGCTCGCAAGAACAATGAGACAACAACACACTCCAGTCTGTTCTCCTCAACAGCGCTAGACGGATTCCAGTTGAGCCCAAGCGTGTCACATCTTTTGATTCGTTCGCTGATGAGCTGCCTcaattacttatatttaatacCCATCCATTTCCCTGACACAGGTAATTAAGCTTTGTAATCATTTGCTCTTTACTAACTACGCCAATCACACTGTAGATTAATTAGACTGTTTATAATTGTGGCTTTtgttgaaaatgtcatttacatcAAGGGCTTTTTACATCTCATCTGCAGCATCTCCACCTGCTATCACAAAGGGCATCGCTCTTGAATAGCTGAAGAAATTAGATTCATCTACAAACAGATAAGATGTGTGGATTTACCGTTTTGAGATATTACAAATGCAAATTCGTGTACACTGGTTCTTGAATAATTGTCTTGTGTTAATTGGAAGCGTTCAGTCACACCTTTTGAGGAACCCTTGAGATGCTATcgtttattgactttttttctggGATGGATTTAGACAAAAATTAACTATCCCCAGTAGATATCGCATTGCGCTAGTATTACTGGGCAGCCTGAACCCATTAGAATATGCGTTTATGGTGTATTCACGTACATTGTTTTGTATGTTTGGATGTAGGCTGAAATGTACAATATGAATGTATCAGCaacatctaaaatataaacgtTTTAACACTATATACAAAGGATtcataatgtatattttgtaactATACATATTTTTGAAGCCCACTCCTACCCTAATGCTAACCAACAATTTACAGAACAAAAGTACAGAACAGCACCAGAAATATCTAAAAAGGATTTTAgggtctttttttaatatgatatttttgcAGTACTTTGATAATGTACGTTTGAGTGTCTATTCAAACAtacttaaatatgcatgtgcGCTAGAACCATGCTTTACATTACGAATACCAACAAACTTATGAAGTGACACTGCACTGAGGCCAACACCATACCGTACGACAAActatttagctttaaaatgatatttgatTGCTCATGAATGTGTTTACATCATACTTCTCAGGGAAGGTGCTTCTTTTGTCACAGGGTACTGAAGTCCAACTGGAGACTGACAAACTGTAAAGCTTTCCTCATTTTAGTGTCAGGTGAATACTATCATTTCTGTTGACGTGACGTTACGTGTTCTGACAGTGCTCTATAATCAGCAGAACCATGATCAATGCCGTGTGCTCGAATGTTTCTGAAAGAGTCACGTGACATCCAACAGTTGTGCTTCTTGTGTTTGCCATGTCACTACAGGATGTACTTAGGCCTTAATGACCTAGATTTTCAACTTCAGTAAATGGAATAGCCCTGCGAGAAAGTGTACCGAGGAGGAAAATGAAAGGGGGGTCCTATCAGTCAATCTTTCATGGGTGAagggaaaatatatttatgcatacacAGTATCCGGTCATTACTGTAAGTGAACTGCGGCTGCACTTTAATGTTCTCAGACGGAAACATTAGTACACATTGTTGCTACAACTGTGCCTGGTGCAATAgggcttaaaatgtatttacgtATTTTCTCATTCTatccatatatatgtatttgctgAAGAGAAGGATTAAGAGATTACATGGAGCAAAAACATTGCTGCATCATGGTGTGAATATGATATGGTATTTATATGAACTGTTGACATTAATCTAAAGAGGTGACAGTGTTAAAAaccttatttaaatgcatgatgccaatgtgtttatgaaaagaagaaaggtaaagcttttcttttctcttgttGTGCATGGCGATGATATTGTATTGCGTGTCCTTACATTGTTTGTTCTGGGTTACGTGGAGCAGTAATAAACGTATGTTAATTTAGaaa

Function

symbol description
gnrhr4 Enables gonadotropin-releasing hormone receptor activity. Acts upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gonad; heart; intestine; male organism; and nervous system. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 7 with or without anosmia. Orthologous to several human genes including GNRHR2 (gonadotropin releasing hormone receptor 2 (pseudogene)).

NR:

description
PREDICTED: putative gonadotropin-releasing hormone II receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0097211 cellular response to gonadotropin-releasing hormone biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004968 gonadotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04280 GNRHR; gonadotropin-releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238500.1 True 3266 mRNA 0.42 3 2052705 2058733

Neighbor

gene id symbol gene type direction distance location
LOC122344761 ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448 coding downstream 154115 1893780 ~ 1898590 (-)
ube2l3b ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding downstream 267316 1780165 ~ 1785389 (-)
sdf2l1 sdf2l1,LOC107704634,LOC107755844,LOC107668746 coding downstream 280913 1769436 ~ 1771792 (-)
top3b top3b,LOC107705001 coding downstream 307009 1733099 ~ 1745696 (-)
ppm1f ppm1f,LOC107599133,LOC107741489,LOC107755823,LOC107668739,LOC107704983 coding downstream 320568 1721233 ~ 1732137 (-)
LOC122346063 LOC107747844,LOC107554104,LOC107556635,LOC107667225 coding upstream 29052 2087785 ~ 2090156 (-)
LOC122345768 LOC107562125,LOC107690349,LOC107554462,LOC107715242 coding upstream 31419 2090152 ~ 2099181 (-)
LOC122346100 LOC107757959,LOC107587426,LOC107709681,LOC107681216,LOC107560221,LOC107560220 coding upstream 326418 2385151 ~ 2418053 (-)
purba LOC107737074,LOC107755849,LOC107668742,LOC107670383,LOC107599601,LOC108431741,LOC107580671 coding upstream 465826 2524559 ~ 2527337 (-)
zgc:65851 zgc:65851,LOC107670379,LOC107708255,LOC107668750,LOC107599600,LOC107755851,LOC107573085 coding upstream 477292 2536025 ~ 2543574 (-)
G32688 NA non-coding downstream 22212 2017378 ~ 2030493 (-)
G32682 LOC107551460,LOC107556260,LOC107715220,LOC107691117,LOC107714787,LOC107690391 non-coding downstream 52248 1999885 ~ 2000457 (-)
G32681 NA non-coding downstream 55862 1996276 ~ 1996843 (-)
G32675 NA non-coding downstream 86173 1966329 ~ 1966532 (-)
G32656 NA non-coding downstream 159630 1851228 ~ 1893075 (-)
G32701 NA non-coding upstream 164612 2223345 ~ 2224056 (-)
G32703 NA non-coding upstream 184934 2243667 ~ 2243883 (-)
G32707 NA non-coding upstream 210087 2268820 ~ 2269330 (-)
LOC122346102 NA non-coding upstream 297233 2355966 ~ 2356780 (-)
G32727 LOC107681241 non-coding upstream 315269 2374002 ~ 2375663 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other downstream 29783 2020096 ~ 2022922 (-)
G32676 NA other downstream 84957 1966637 ~ 1967748 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other downstream 358419 1673024 ~ 1694286 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other downstream 698291 1342606 ~ 1354414 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other downstream 716518 1312604 ~ 1336187 (-)
G32857 NA other upstream 437771 2496504 ~ 2554146 (-)
snrnp27 snrnp27 other upstream 521815 2580548 ~ 2585452 (-)
add2 add2,LOC107668755 other upstream 527854 2586587 ~ 2605917 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other upstream 877010 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other upstream 892729 2951462 ~ 2960177 (-)

Expression


Co-expression Network