limk2 (limk2,LOC107743341,LOC107654635,LOC107696070,LOC107741211)


Basic Information

Item Value
gene id limk2
gene name limk2,LOC107743341,LOC107654635,LOC107696070,LOC107741211
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12540284 ~ 12560679 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238504.1
GTCGGACTGGAGACAGAGAAACTTTGAACTTGCTAAGAAACTGGATGAAACGCTGTCCCCCCCTCAATTTTAAGCTGGATTTACTCCGTGGGTCTTACACATGGATCAGAAAAGGAGCATCGTTGATGTGCCCTGCGTGAACTTCAGACTTCTCTGGACCAGCATGTGAGCTTGGAACAAATATAATTCAATCAGATCGGGGAGGACATGGACGAACGAGAAGATGTGACGGAGCGCGCGTGCACGGGCTGTGGCGGGAGGATTCAGGACGCCTTTCACGTGAAGGTTCTTCAAGACGCCTGGCACAACTCATGCTTTCAGTGTTCTGTGTGCTTTGATCTCCTGACAAACTGGTACTTTGAGAAAGAGGGGAAGTTGTACTGTCACAAACACTACTGCGAGAAGTTTGGGGAGCTGTGCCATGGCTGTTCGCTGCTTATGACTGGACCTGCTATGGTGGCAGGAGACTATAAATACCACCCCGAATGCTTCGTGTGTTTAAGCTGCAGGGTGGTGATTGAGGATCGGGATACCTATGCCTTAGTGGAACGAACTAAACTCTACTGTGGTAAATGCTACAAGCAGGTGGTCCTGACGCCAATGTTGGAGAAGCGTTGTTTAGTCGACTCTCCATCGGACCTGCTCCCTCACACAGTGACTCTTGTGTCCATGCCCGCTGCCACCAATGGTAAACGAGGTTTCTCTGTCACCGTGATTAGAGACTGCACAAGTGCCACTGCCAGCGTCCAGGTCAAAGAGGTCAGAGGGATGCATATTAGTCCAGAGGTTCGGAACGCCATCCATGTTGGGGACCGAATCCTAGAGATCAATGGACTCCCGGTGTCAACTCTGATGGAAGAGGAGGTGGAGGACCTGATCCATCGGACCAGTCAGACTCTGCAGCTGTTGATGGAATATGATCCAGTCAGACAGCGTCTTGACCGACTCCGTTTGGGTTCTTCTCGCAATCAACTGGGTGTCCCTGCGGCCTCCCGCATGCGTATGTCCTCCACAGCGGATGCTGAGATCGAACGAAGTGACTCCGTAGACAATGGGACATTGAAAAGGAGGTCTCTCAGACGTAGCAACAGCATCTGCAAGTCTCCAGTCTCTTCATCTCCTAAGGACCCTCCGATTCTAACTCGAGATATTGGGCGCTCTGAATCTCTTCGTTCTCCTTCAAGCTGCTCCCACCGTATTTTCCGTCCCTGTGACCTCATTCATGGAGAAATCCTCGGAAAAGGCTTCTTTGGACAGGCCATCAAGgtGACTCATAAAGCCACAGGTGAGGTGATGGTTATGAAGGAGCTGATCCGCTGTGATGAAGAGACGCAGAAAACATTCCTACAGGAGgtaaAAGTGATGAGAAGTCTTGATCACACACACGTTTTGAAGTTCATTGGGGTTTTGTACAAGGACAAGCGGCTTAATCTGATAACAGAGTTCATTGAGGGAGGCACTCTAAAGGATTTTATCAGAGACACGGACTCATTCCCATGGGAACAGAGAGTTAGCTTCGCAAAAAGCATCGCATCTGGAATGGCATATCTGCATTCAATGAGCATCATACATCGAGATCTCAACTCTCACAACTGCCTGGTCAAACTGGACAACACTGTTGTGGTGGCAGATTTCGGTCTATCTCGTCTAATCATGGAGGATAAGGTCAAGCAGCCACCCCCCGACAAACCAACCAATAAGAAAAGACTGTTTCGACGGATTGACCGCAAGAAACGCTACACGGTGGTGGGGAACCCATACTGGATGGCCCCAGAAATGCTTAATGGTAAACGCTACGATGAGAAGGTGGATATTTTCTCCTTTGGCATTGTGCTTTGTGAGATTATCGGTCAGGTTTATGCAGATCCCGAGTGTCTCCCGAGAACGCTGGATTTTGGGCTCAATGTGAGAAAGTTCATTGAGAAGTTTCTTCCTGAGCACTGTCCTCCGGCTTTCTTCGCGTTGGCTGTGGCTTGCTGTGATCTCACCCCGGACAACCGGCCTGCTTTTCAGAAGTTGGAGGACTGTTTTGAGGCGCTAGCTCTGAATCAGGAGTTGAATATTCCTCTGCCTGCTGAACTGGACGATCTTCAGCAGAGGTTTTTAAGGACTTATGGACCCAGTGAAATTGCCTCTGAAAACCAGGAAAACAACATAGAGTAATCCAGCAGCAGCGAAGGCTGAGATGCAGgctggattttcttttttttctttttttttttaagagtttacAGAACTGAATCAGATCATTTACCTTGGGTTTGCATACTGGGAACATGCTGATGCTGGTGTTCTTTGGAGAGGTCTGTCATGACGCTCTCAGAACTTTGAGGGCATTCTAGTACTGAAGAGGGTTCTTGGCAGAGTTCTGTTAAAGGAACAGGTACATTTCAGTGACCAAGAGCTTCCTTCTGGCATTTTCTCATTCTGTCTAATTTGGATGGTTTAGTTACGATTTAACCGTGTAGCGCAAACCTTTTAAGAGTGCTTACCACTAGCTGAGTTATAGAGCTCTCTAATGAAGTTTCAGATTTCAGTTTTCGTAGTGTAGCATCCATTAAAATTgataaatcaaaacaattataaaagtGTTCGTCATTAAACCTTTCAAGAACAtgtctgggtcatatttcaaCATTTGAGGCCATTAGGATTGCTTTTAAAGTTTTCGGGCGATTAACCGCTTTATTTCAAACTGTACAAATACACAAAGGTTCTGTTAATTCACTAAATTGAAACTACCTGATCAACTCTAGAAATGgaagttttttttcaaacattgtTGAACCACGCTGCCCCCTGCAGGCCGTTGTGTTTAAGTGCACTCAATCCCTGGGCTGTTTTTGTGGCACTAGCGCTTGAGTCCTGATCCCTGTAACTCTACAATCTAaagacaagagagagaaaacatttgcaaaagcTAAATAAGTTTCTGAGTTCAGATTTGATCTCCTACGTGTGGTTTCTTGCAAATGGCGTCTTACATTGTAGTCCATTCCTGGTACATCAGCTCTTTTGAAAACTGGAGTAGTTTATTCCACCGTCGTGGGCTTACCTTGTACATATACCATGACAGGAAAAGAATAATTGTTCTCTGTATCTAAACAGCTCTGGAGTTGTATTCTCCAAGTGAAATGATAAGTGAGATCATAATGCTGGATCTTGACCGGCCGTTTCCAGGAGTTTTTTTTAGCTCCTGCCGAAACGGGCTGTGATCAAAAATGTCTGCAACGCAGAATTTAACGAgtgatttgaaaatgaatgtcatCCTTACTTTGATCACTAATGTTTAAATTAACTGGATATATTGTTAATGTTTGTATAGATTTGATGTCGTATGTTGGGATTATGTGGATTTGTAGTCTTCGTGTGTTTGTAGAATGtgaaaagctgtaaaaaaaaaaaaaaaaaaaagcattttgtttctAGTCTTATCTGTCCAAGGTACTGACATGTACAAAAATTATAACCACTACTTGTACGCCACAGGATTTCTTACGCTAATGTTTCATGAATAAAGATGAGTACGTATTGGCTCCTA

Function

symbol description
limk2 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in actin cytoskeleton organization. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including axial vasculature; cephalic musculature; digestive system; mid cerebral vein; and nervous system. Orthologous to human LIMK2 (LIM domain kinase 2).

NR:

description
PREDICTED: LIM domain kinase 2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K05744 LIMK2; LIM domain kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238504.1 True 3541 mRNA 0.45 16 12540284 12560679

Neighbor

gene id symbol gene type direction distance location
si:dkey-174n20.1 si:dkey-174n20.1,LOC107696056,LOC107741298,LOC108255501,LOC108444311,LOC105893868 coding downstream 26319 12510566 ~ 12513965 (-)
hs3st1l2 hs3st1l2,LOC107557106,LOC107741295,LOC107743333,LOC107654638,LOC107663220,LOC107578102 coding downstream 111902 12412341 ~ 12428382 (-)
cds2 cds2,LOC107597267,LOC107654641,LOC107741205,LOC107663217 coding downstream 130616 12396282 ~ 12409668 (-)
arhgap25 LOC107741203,LOC107557123,LOC107663229,LOC107654642,LOC107743332,LOC107597266 coding downstream 146242 12381364 ~ 12394042 (-)
LOC122345273 NA coding downstream 176569 12356836 ~ 12363715 (-)
LOC122345379 NA coding upstream 79698 12640377 ~ 12642522 (-)
cmklr1 LOC107743349,LOC107597353,LOC107654611,LOC107741300,LOC107696054,LOC107595970 coding upstream 81977 12642656 ~ 12644497 (-)
LOC122345863 NA coding upstream 108271 12668950 ~ 12673658 (-)
sart3 sart3,LOC107654630,LOC107597276,LOC107741219,LOC107595944 coding upstream 124379 12685058 ~ 12701945 (-)
tmem119a tmem119,tmem119a,LOC107597281,LOC107727157,LOC107741302,LOC107696065 coding upstream 147709 12708388 ~ 12712054 (-)
G35949 NA non-coding downstream 2482 12532390 ~ 12537802 (-)
G35928 NA non-coding downstream 24734 12463906 ~ 12515550 (-)
G35923 NA non-coding downstream 89519 12448214 ~ 12450765 (-)
G35922 LOC107696053,LOC107654639,LOC107743336,LOC107595973 non-coding downstream 95064 12443787 ~ 12445220 (-)
G35812 arhgap25,LOC107597266,LOC107743332,LOC107654642 non-coding downstream 283472 12255480 ~ 12256812 (-)
LOC122345380 NA non-coding upstream 41537 12602216 ~ 12606938 (-)
G35966 wscd2,LOC107597274,LOC107743343,LOC107696066,LOC107595945 non-coding upstream 76511 12637190 ~ 12639377 (-)
LOC122345905 NA non-coding upstream 319382 12880061 ~ 12884157 (-)
G36004 fbp1b,LOC107718665,LOC107655925,LOC107596168,LOC107757529,LOC107596723 non-coding upstream 352947 12913626 ~ 12916814 (-)
G36009 NA non-coding upstream 364064 12924743 ~ 12926462 (-)
G35936 NA other downstream 34326 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 220599 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 370874 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 724340 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 887657 11583780 ~ 11652627 (-)
G36047 NA other upstream 493165 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 1018382 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 1093615 13654294 ~ 13699226 (-)
G36298 NA other upstream 1156445 13717124 ~ 13718543 (-)
G36336 NA other upstream 1257063 13817742 ~ 13818942 (-)

Expression


Co-expression Network